# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	8.29e-13		
2yzsA	315	7.456		
1vetB	125	8.982	d.110.7.1	108554
1i60A	278	12.35	c.1.15.4	71118
1tedA	393	13.59	c.95.1.2	106807
2ja9A	175	15.87		
1cbfA	285	16.23	c.90.1.1	35587
1yx1A	264	18.42	c.1.15.7	124169
2vh1A	220	20.72		
2nutC	196	21.73		
2rgqA	144	26.65		
1xrsB	262	30.05	c.23.6.1,d.230.4.1	115884,115885
1vkpA	383	32.20	d.126.1.6	108686
1xp3A	307	33.39	c.1.15.1	122210
1tfjA	219	34.74		
1oqkA	97	36.41	b.137.1.1	93419
1g6eA	87	42.28	b.11.1.6	60317
1wu7A	434	42.57	c.51.1.1,d.104.1.1	121275,121276
1nf2A	268	43.11	c.108.1.10	91849
2j01Z	206	47.51		
1ht6A	405	52.90	b.71.1.1,c.1.8.1	83629,83630
1dfuP	94	53.27	b.53.1.1	26936
1knqA	175	54.37	c.37.1.17	72786
1h4vB	421	57.64	c.51.1.1,d.104.1.1	60624,60625
1skoB	130	59.06	d.110.7.1	105677
2j3mA	572	59.12		
2a1hA	365	63.58	e.17.1.1	125997
1ytqA	204	68.31	b.11.1.1,b.11.1.1	124012,124013
1tig	94	69.39		
2gasA	307	70.10		
1k82A	268	72.69	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1udmA	149	74.00	d.109.1.2	107780
1ri5A	298	74.63	c.66.1.34	97502
1feuA	206	74.80	b.53.1.1	59801
2auwA	170	81.78	a.35.1.10,d.331.1.1	127339,127340
2dyoA	297	82.61		
1ls1A	295	88.92	a.24.13.1,c.37.1.10	78170,78171