# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	5.86e-14		
1yx1A	264	15.69	c.1.15.7	124169
1vetB	125	17.71	d.110.7.1	108554
1t0aA	159	18.90	d.79.5.1	112192
1knqA	175	25.79	c.37.1.17	72786
1dzfA	215	25.94	c.52.3.1,d.78.1.1	33344,39753
1g6eA	87	27.03	b.11.1.6	60317
2yzsA	315	27.24		
2nutC	196	29.86		
3b5vA	248	32.71		
1i60A	278	35.29	c.1.15.4	71118
2ipxA	233	42.72		
1fdr	248	44.53		
1i4nA	251	45.01	c.1.2.4	71114
2z2iA	191	48.66		
1pcxA	810	49.64	a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1	94497,94498,94499,94500,94501
2anuA	255	49.66	c.6.3.1	127058
2q9kA	151	51.25		
2px7A	236	51.70		
1tedA	393	53.13	c.95.1.2	106807
1sf9A	128	54.69	b.34.15.1	98831
1auaA	296	57.50	a.5.3.1,c.13.1.1	16290,30882
1gx1A	160	65.48	d.79.5.1	70675
2auwA	170	65.79	a.35.1.10,d.331.1.1	127339,127340
2uzhA	165	69.87		
3b7nA	320	70.25		
2he7A	283	70.78		
2qe7H	135	71.91		
1jysA	242	74.30	c.56.2.1	77216
2pjdA	343	74.46		
1wu7A	434	78.37	c.51.1.1,d.104.1.1	121275,121276
1umkA	275	81.34	b.43.4.2,c.25.1.1	113312,113313
1hyvA	166	81.79	c.55.3.2	61424
1qfjA	232	82.35	b.43.4.2,c.25.1.1	25655,31545
2e5yA	133	83.14		
2rgqA	144	83.87		
1y4wA	518	84.06	b.29.1.19,b.67.2.3	116470,116471
2vh1A	220	85.10		
1wz8A	264	86.24	c.14.1.3	121483
2hk0A	309	89.06