# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 2.46e-10 1c8cA 64 2.695 b.34.13.1 59084 1azpA 66 3.427 b.34.13.1 37467 1h9mA 145 5.762 b.40.6.2,b.40.6.2 60833,60834 1faoA 126 6.609 b.55.1.1 26974 1r9fA 136 6.961 d.255.1.1 97257 1ywuA 149 7.356 b.45.2.1 124164 1xyiA 66 7.495 1s21A 206 7.893 d.166.1.4 105222 1zbpA 273 9.461 e.61.1.1 124861 2f1lA 187 10.45 b.41.1.4,b.43.3.4 132780,132781 2hc8A 113 11.07 2d4qA 257 11.38 2nptA 106 13.13 d.15.2.2 138448 1upqA 123 14.48 b.55.1.1 113392 2gclA 261 15.97 b.55.1.10 134991 2yweA 600 16.36 2fibA 269 16.59 d.171.1.1 42457 1f9rA 70 16.96 d.9.1.1 90484 2qggA 182 17.13 1eazA 125 19.74 b.55.1.1 70113 1omwA 689 24.55 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1g6eA 87 24.62 b.11.1.6 60317 1cm9A 74 26.41 d.9.1.1 37405 1tw0A 157 26.72 d.129.3.1 119364 1aqcA 172 27.26 b.55.1.2 26983 1lci 550 28.31 2fhdA 153 28.54 2e29A 92 28.88 1prtA 234 29.18 d.166.1.1 42253 3fib 249 29.74 2j5zA 221 30.45 3b77A 193 30.51 1f2lA 76 31.01 d.9.1.1 37436 2q8rE 66 34.11 1wj6A 101 34.32 d.15.2.2 114693 1nr4A 71 34.38 d.9.1.1 92077 3il8A 72 34.46 d.9.1.1 37356 1mi1A 414 35.99 a.169.1.1,b.55.1.6 79137,79138 3fibA 249 41.02 d.171.1.1 42455 1q8iA 783 41.13 c.55.3.5,e.8.1.1 96208,96209 2aehA 369 41.30 a.11.2.1,b.55.1.5,d.15.1.4 126625,126626,126627 1u94A 356 41.57 c.37.1.11,d.48.1.1 107743,107744 1b3aA 67 41.74 d.9.1.1 37410 2al6A 375 42.50 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 2pw9A 268 42.78 2ja9A 175 43.05 1fl2A 310 44.49 c.3.1.5,c.3.1.5 59869,59870 1xppA 115 45.96 d.74.3.2 115768 1w1hA 151 46.88 b.55.1.1 114076 1lw3A 657 48.15 b.55.1.8,c.45.1.3 91152,91153 2asuB 234 48.36 1v5pA 126 48.37 b.55.1.1 108382 2h7dA 101 50.21 2ra4A 76 50.61 1esrA 76 50.77 d.9.1.1 37427 2gj2A 85 51.96 2p0dA 129 52.33 1ylnA 252 52.40 b.45.2.1,b.45.2.2 123657,123658 2q79A 93 52.86 1yvvA 336 53.07 2aefA 234 53.08 1g99A 408 53.70 c.55.1.2,c.55.1.2 33457,33458 1xxaA 78 53.84 d.74.2.1 39700 2v14A 134 53.97 2he7A 283 54.06 1oo0A 147 54.71 d.232.1.1 87182 2uwqA 86 55.50 1wmhA 89 56.14 d.15.2.2 114744 2b5tI 432 57.08 e.1.1.1 127905 1vajA 214 57.13 d.309.1.1 119907 2jhmF 218 57.62 1wpgA 994 57.83 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 2heqA 84 58.72 2qqrA 118 60.89 1xo0A 324 61.61 a.60.9.1,d.163.1.1 115674,115675 1u5fA 148 62.98 b.55.1.1 119542 2gruA 368 63.05 2fk9A 157 63.14 2joqA 91 64.41 2auwA 170 66.66 a.35.1.10,d.331.1.1 127339,127340 1owxA 121 67.21 d.58.7.1 87494 1dokA 77 67.24 d.9.1.1 37420 2g35A 100 68.16 b.55.1.5 134548 1vqoB 338 68.89 b.43.3.2 120363 1u5dA 108 69.89 b.55.1.1 119536 3psgA 370 70.28 b.50.1.2 26841 2e0qA 104 70.97 2j0aA 280 71.33 3cm1A 139 72.12 2d39A 237 73.48 1a0p 290 73.65 1zceA 155 74.02 b.122.1.8 124907 2d1xA 66 74.41 1zxtA 76 77.04 2c5qA 240 77.07 2zbcA 83 77.38 2astA 159 77.41 1q1gA 276 78.72 c.56.2.1 95574 1btn 106 79.38 1bcpA 235 80.14 d.166.1.1 42255 1oc0A 379 81.30 e.1.1.1 86790 1ywyA 74 82.56 b.55.2.1 124166 2if5A 120 82.80 2fjuB 799 83.35 2jexA 209 83.39 1zsqA 528 84.77 b.55.1.8,c.45.1.3 125616,125617 4crxA 322 86.45 a.60.9.1,d.163.1.1 18095,42155 1xx0A 127 86.98 b.55.1.1 122412 1rsgA 516 87.58 1unqA 125 87.95 b.55.1.1 107968 1a0pA 290 88.33 a.60.9.1,d.163.1.1 18105,42165 1t77A 414 88.62 a.169.1.1,b.55.1.6 112290,112291 1n62A 166 89.39 a.56.1.1,d.15.4.2 80090,80091