# List of top-scoring protein chains for T0413.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k4yA 534 7.18e-14 c.69.1.1 72069 1w6rA 543 4.99e-13 c.69.1.1 114283 2bceA 579 5.03e-13 c.69.1.1 34625 1ut6A 537 5.06e-13 c.69.1.1 119698 1ea5A 537 5.07e-13 c.69.1.1 34592 2cekA 535 5.10e-13 c.69.1.1 130347 2dfpA 534 5.10e-13 c.69.1.1 34597 1gqrA 532 5.10e-13 c.69.1.1 70374 1eeaA 534 5.12e-13 c.69.1.1 34609 1aqlA 532 6.46e-13 c.69.1.1 34627 1aknA 579 6.61e-13 c.69.1.1 34626 2ogtA 498 1.37e-12 2ogsA 498 1.38e-12 2c58A 537 1.80e-12 c.69.1.1 129891 2hrrA 532 2.06e-12 c.69.1.1 136696 2h7cA 542 2.06e-12 c.69.1.1 136207 1mx1A 548 2.06e-12 c.69.1.1 85165 1f8uA 583 5.69e-12 c.69.1.1 34620 1b41A 539 5.94e-12 c.69.1.1 34621 1c7jA 489 7.04e-12 c.69.1.1 34631 3be8A 588 7.25e-12 2vh8A 562 7.27e-12 1qe3A 489 7.39e-12 c.69.1.1 34630 1jmyA 522 1.64e-11 c.69.1.1 63182 1c7iA 489 1.85e-11 c.69.1.1 34632 1f6wA 533 2.03e-11 c.69.1.1 34629 2pm8A 574 2.14e-11 1c2oA 539 2.89e-11 c.69.1.1 34610 1c2bA 540 2.89e-11 c.69.1.1 34614 1n5mA 541 2.90e-11 c.69.1.1 80031 2ha2A 543 2.90e-11 c.69.1.1 136274 1ku6A 549 2.90e-11 c.69.1.1 91037 2c0pA 548 2.90e-11 c.69.1.1 129600 1p0iA 529 2.90e-11 c.69.1.1 93867 2j4cA 529 2.91e-11 1maaA 547 2.91e-11 c.69.1.1 34615 1q84A 580 2.94e-11 c.69.1.1 96156 2fj0A 551 6.97e-11 1pv1A 299 1.00e-10 c.69.1.34 111639 3bixA 574 1.03e-10 2jf0A 548 1.07e-10 3b3qA 577 1.09e-10 2qzpA 562 2.05e-10 2hu5A 582 2.25e-10 b.69.7.2,c.69.1.33 136763,136764 1z68A 719 2.54e-10 2uz0A 263 3.87e-10 2ha5A 543 4.32e-10 1orvA 728 4.78e-10 b.70.3.1,c.69.1.24 87354,87355 1u8eA 728 6.37e-10 b.70.3.1,c.69.1.24 107733,107734 2gbcA 730 7.12e-10 2g63A 726 7.29e-10 b.70.3.1,c.69.1.24 134686,134687 1tk3A 728 7.29e-10 b.70.3.1,c.69.1.24 107069,107070 3c45A 728 7.29e-10 2ripA 729 7.29e-10 2rguA 734 7.30e-10 2oncA 731 7.30e-10 1pfqA 731 7.30e-10 b.70.3.1,c.69.1.24 88061,88062 1wcyA 740 7.32e-10 b.70.3.1,c.69.1.24 120903,120904 2bgrA 738 7.33e-10 b.70.3.1,c.69.1.24 128496,128497 1r9mA 733 7.33e-10 b.70.3.1,c.69.1.24 104870,104871 1r9nA 739 7.46e-10 b.70.3.1,c.69.1.24 118745,118746 2qt9A 766 7.62e-10 1jjfA 268 9.09e-10 c.69.1.2 66765 3bl8A 580 1.02e-09 2ecfA 741 1.02e-09 1cleA 534 2.06e-09 c.69.1.17 34771 1lppA 549 2.16e-09 c.69.1.17 34764 1crlA 534 2.16e-09 c.69.1.17 34765 1llfA 534 2.16e-09 c.69.1.17 78094 1gz7A 534 2.29e-09 c.69.1.17 83401 2hu8A 582 3.58e-09 b.69.7.2,c.69.1.33 136772,136773 2d5lA 706 3.95e-09 1dx4A 585 4.29e-09 c.69.1.1 34622 3bwxA 285 5.77e-09 2z3zA 706 6.41e-09 1evqA 310 1.16e-08 c.69.1.2 34635 1u4nA 310 1.24e-08 c.69.1.2 113021 1thgA 544 1.39e-08 c.69.1.17 34763 2qm0A 275 1.53e-08 1jt2A 268 1.69e-08 c.69.1.2 71858 2og1A 286 2.32e-08 2hm7A 310 2.37e-08 2dcmA 706 6.98e-08 1c4xA 285 7.41e-08 c.69.1.10 34684 1lzlA 323 9.18e-08 c.69.1.2 78306 1ukcA 522 1.06e-07 c.69.1.17 107911 3bdiA 207 1.76e-07 2r11A 306 1.76e-07 1xrlA 293 2.11e-07 1xrrA 293 2.14e-07 1mtzA 293 2.47e-07 c.69.1.7 79467 1xroA 293 2.60e-07 1ehyA 294 2.98e-07 c.69.1.11 34693 2cjpA 328 3.60e-07 1xqvA 293 3.83e-07 2c7bA 311 3.97e-07 2puhA 286 4.31e-07 2rhwA 283 4.46e-07 2pujA 286 6.90e-07 1va4A 279 7.13e-07 c.69.1.12 108458 1auoA 218 9.52e-07 c.69.1.14 34716 3c5vA 316 1.00e-06 1jjiA 311 1.37e-06 c.69.1.2 66766 1a8sA 273 1.38e-06 c.69.1.12 34710 2h1iA 226 1.64e-06 1a8qA 274 1.70e-06 c.69.1.12 34702 1m33A 258 2.19e-06 c.69.1.26 78514 1fj2A 232 2.56e-06 c.69.1.14 34720 2zjfA 362 3.63e-06 2e3jA 356 4.00e-06 1u2eA 289 4.58e-06 1a88A 275 4.67e-06 c.69.1.12 34707 1womA 271 4.80e-06 1xqwA 293 4.98e-06 1r3dA 264 7.37e-06 c.69.1.35 111680 2o7rA 338 7.60e-06 2ockA 254 8.23e-06 1ufoA 238 9.02e-06 c.69.1.27 99344 1jfrA 262 1.23e-05 c.69.1.16 34724 1zoiA 276 1.44e-05 2ocgA 254 1.70e-05 2r8bA 251 1.77e-05 1r1dA 247 2.18e-05 c.69.1.29 96813 1tqhA 247 2.20e-05 c.69.1.29 107225 3c5wP 310 2.55e-05 1j1iA 296 2.58e-05 c.69.1.10 83977 2d0dA 282 2.74e-05 1hkhA 279 3.10e-05 c.69.1.12 90628 1y37A 304 3.57e-05 3bdvA 191 3.76e-05 1jkmA 361 4.49e-05 c.69.1.2 34633 2vf2A 311 5.58e-05 1gkkA 297 0.000105 c.69.1.2 65248 1zd3A 555 0.000107 c.108.1.2,c.69.1.11 124930,124931 2bklA 695 0.000126 2d80A 318 0.000130 2i3dA 249 0.000138 1xfdA 723 0.000142 b.70.3.1,c.69.1.24 115251,115252 1l7aA 318 0.000225 c.69.1.25 77772 1hdeA 310 0.000255 c.69.1.8 34675 1bezA 310 0.000278 c.69.1.8 34666 2yxpX 310 0.000281 1b6gA 310 0.000282 c.69.1.8 34661 1uk8A 282 0.000351 c.69.1.10 107907 1cr6A 554 0.000351 c.69.1.11,c.108.1.2 34687,43337 2pblA 262 0.000366 2oclA 254 0.000386 1wb4A 297 0.000433 c.69.1.2 120827 3bf7A 255 0.000611 3bf8A 255 0.000688 3bxpA 277 0.000836 1wm1A 317 0.000845 c.69.1.7 109405 1odsA 318 0.001424 c.69.1.25 86877 3bjrA 283 0.001638 1q0rA 298 0.001755 c.69.1.28 95508 1ivyA 452 0.002727 c.69.1.5 34654 2fukA 220 0.002864 2gzsA 278 0.002871 1ycdA 243 0.002975 2qubA 615 0.003165 2pshA 319 0.003718 2psdA 318 0.003727 2psjA 319 0.003758 2d81A 318 0.003832 2psfA 310 0.003930 1hlgA 371 0.004093 c.69.1.6 34656 3b5eA 223 0.004179 1qgeD 222 0.006312 c.69.1.18 34773 1odtC 318 0.007279 c.69.1.25 86885 1azwA 313 0.007754 c.69.1.7 34658 1ys1X 320 0.008299 1cvlA 319 0.009017 c.69.1.18 34786 1tahA 318 0.009055 c.69.1.18 34775 2rauA 354 0.01063 2o2gA 223 0.01190 1zi9A 236 0.01209 1y7iA 268 0.01375 c.69.1.20 116546 1xklA 273 0.01414 c.69.1.20 115410 1zi6A 236 0.01574 1zicA 236 0.01648 1zixA 236 0.01655 1bn7A 294 0.01670 c.69.1.8 34677 1cqwA 295 0.01710 c.69.1.8 34679 1zi8A 236 0.01758 1sfrA 304 0.01974 c.69.1.3 105500 3c8dA 403 0.02153 2yysA 286 0.02791 1dqyA 283 0.02831 c.69.1.3 34640 1dqzA 280 0.02844 c.69.1.3 34638 1yr2A 741 0.03672 1va5A 303 0.03727 c.69.1.3 108464 1a8uA 277 0.04482 c.69.1.12 34703 4lipD 320 0.04622 c.69.1.18 34783 1broA 277 0.04778 c.69.1.12 34700 1mnaA 298 0.05059 c.69.1.22 79322 2h7xA 319 0.05095 c.69.1.22 136227 1vlqA 337 0.05208 c.69.1.25 108848 1vz3A 710 0.05341 b.69.7.1,c.69.1.4 108947,108948 1vkhA 273 0.05470 c.69.1.32 108662 1h2wA 710 0.06534 b.69.7.1,c.69.1.4 76596,76597 1h2xA 710 0.06548 b.69.7.1,c.69.1.4 76598,76599 2z8zA 617 0.06711 2z8xA 617 0.06813 2fx5A 258 0.06845 1e5tA 710 0.06910 b.69.7.1,c.69.1.4 27676,34644 1vz2A 710 0.07006 b.69.7.1,c.69.1.4 108945,108946 1imjA 210 0.07196 c.69.1.23 71246 1zj4A 236 0.07248 2qruA 274 0.07381 1o6fA 710 0.08726 b.69.7.1,c.69.1.4 81085,81086 2jbwA 386 0.09148 1ziyA 236 0.09556 1zj5A 236 0.1074 1whsA 255 0.1130 c.69.1.5 34649 1whtA 256 0.1158 c.69.1.5 34646 1t2nA 181 0.1163 c.69.1.18 112226 1ggvA 232 0.1208 c.69.1.9 34683 1o6gA 710 0.1248 b.69.7.1,c.69.1.4 81087,81088 1bcsA 263 0.1263 c.69.1.5 34647 1t4mA 181 0.1512 c.69.1.18 112243 1ispA 181 0.1569 c.69.1.18 76778 2qxuA 179 0.1698 1bu8A 452 0.1710 b.12.1.2,c.69.1.19 23647,34795 3sc2A 259 0.1752 c.69.1.5 34648 1f0nA 285 0.1796 c.69.1.3 34636 2oxeA 466 0.1912 2pvsA 452 0.2056 1ex9A 285 0.2292 c.69.1.18 34785 1r88A 280 0.2314 c.69.1.3 97219 1w52X 452 0.2592 1rp1A 450 0.2720 b.12.1.2,c.69.1.19 23646,34794 3tglA 269 0.3526 c.69.1.17 34733 1brtA 277 0.3577 c.69.1.12 34699 2pplA 485 0.4205 1ryyA 652 0.4414 b.18.1.13,c.69.1.21 118821,118822 1dinA 236 0.4458 c.69.1.9 34682 2qmqA 286 0.4813 2pl5A 366 0.4833 1lpbB 449 0.4913 b.12.1.2,c.69.1.19 23643,34791 2qs9A 194 0.5437 1tibA 269 0.5592 c.69.1.17 34738 1gplA 432 0.6269 b.12.1.2,c.69.1.19 23645,34793 1tglA 269 0.6353 c.69.1.17 34734 4tglA 269 0.6353 c.69.1.17 34735 1k8qA 377 0.6504 c.69.1.6 72177 5tglA 269 0.8962 c.69.1.17 34736 2b9vA 652 1.162 b.18.1.13,c.69.1.21 128199,128200 1wpxA 421 1.239 c.69.1.5 121156 2b61A 377 1.417 1sckA 257 1.574 c.69.1.20 105421 1yb6A 256 1.599 c.69.1.20 122870 1qj4A 257 1.602 c.69.1.20 34796 1pjaA 302 1.984 c.69.1.13 94758 2pbqA 178 2.148 2hfkA 319 2.363 1z7aA 308 2.425 c.6.2.6 124591 2iqcA 210 2.612 2o8nA 265 2.672 1kezA 300 2.873 c.69.1.22 68546 1mo2A 294 2.875 c.69.1.22 79331 1cpyA 421 3.155 c.69.1.5 34651 1mpxA 615 3.232 b.18.1.13,c.69.1.21 85041,85042 2oryA 346 3.745 1afrA 345 4.240 a.25.1.2 16805 1oq9A 363 4.696 a.25.1.2 87257 2j2fA 363 4.760 2fg5A 192 5.096 c.37.1.8 133401 1h4fA 406 5.811 c.95.1.1,c.95.1.1 90609,90610 1e8nA 710 6.403 b.69.7.1,c.69.1.4 27675,34643 1qz8A 113 6.431 b.140.1.1 96619 1ethA 448 6.559 b.12.1.2,c.69.1.19 23641,34789 1uw7A 143 6.834 b.140.1.1 100099 1tiaA 279 7.603 c.69.1.17 34737 1lgyA 269 7.866 c.69.1.17 34758 1iayA 428 8.969 c.67.1.4 62130 1eysL 280 9.591 f.26.1.1 43515 1ob8A 135 10.29 c.52.1.18 111627 2bywA 418 10.40 c.95.1.1,c.95.1.1 129498,129499 1f91A 406 10.91 c.95.1.1,c.95.1.1 59713,59714 1ek4A 418 11.00 c.95.1.1,c.95.1.1 59436,59437 1dd8A 406 11.01 c.95.1.1,c.95.1.1 35932,35933 2vbaA 406 11.02 2qjwA 176 11.47 2hdwA 367 11.54 2i5nL 273 12.10 f.26.1.1 137066 2bz4A 418 12.24 c.95.1.1,c.95.1.1 129542,129543 1dxrL 273 12.74 f.26.1.1 43431 2cb9A 244 13.90 1iy9A 275 14.77 c.66.1.17 76943 2bz3A 418 15.53 c.95.1.1,c.95.1.1 129534,129535 2b2cA 314 15.58 c.66.1.17 127706 1hplA 449 15.67 b.12.1.2,c.69.1.19 23639,34787 2hihA 431 16.13 3bxoA 239 18.44 1mzpA 217 19.76 e.24.1.1 79710 2dksA 130 21.63 1piwA 360 21.67 b.35.1.2,c.2.1.1 104156,104157 2qeeA 437 21.96 2pw9A 268 22.97 1o89A 345 23.83 b.35.1.2,c.2.1.1 92644,92645 1lb6A 160 24.15 b.8.1.1 73798 1lb4A 159 24.41 b.8.1.1 73796 1tujA 123 28.26 2b7oA 464 33.84 c.1.10.8 128047 2pnkA 428 34.43 2q08A 427 34.43 2bdtA 189 34.56 c.37.1.25 128344 1m41A 380 36.13 c.1.16.4 78595 1nqkA 381 36.15 c.1.16.4 92050 2qj8A 332 40.75 1gt6A 269 41.21 c.69.1.17 76342 1qdbA 473 41.32 a.138.1.3 19688 1eiwA 111 42.23 c.23.3.1 31130 1dwqA 262 42.94 c.69.1.20 34808 1q87A 221 45.03 e.47.1.1 96192 1rykA 69 45.51 a.60.11.1 98105 1im8A 244 46.61 c.66.1.14 66212 2icsA 379 50.48 b.92.1.8,c.1.9.14 137241,137242 2ed1A 76 50.55 2pkgA 580 52.09 a.118.1.2 139708 2nymA 582 52.23 a.118.1.2 138821 1b3uA 588 53.28 a.118.1.2 19135 2ie4A 589 53.39 a.118.1.2 137291 1g42A 296 54.34 c.69.1.8 65139 1iz7A 295 54.36 c.69.1.8 76982 2pf4A 589 54.42 1cv2A 296 54.70 c.69.1.8 34680 2p4sA 373 55.22 1mj5A 302 57.88 c.69.1.8 91285 1wcfA 171 58.85 1sxvA 172 58.86 4ubpC 570 58.89 b.92.1.1,c.1.9.2 28431,29053 1ie7C 570 59.66 b.92.1.1,c.1.9.2 62315,62316 3bwcA 304 60.56 1nf5B 286 61.86 c.68.1.2 80454 2yvuA 186 62.58 3b89A 252 62.82 1k9vF 201 63.59 c.23.16.1 68365 1bh9A 45 64.05 a.22.1.3 16483 1kxjA 205 64.71 c.23.16.1 73153 1t2uA 214 64.75 c.15.1.3,c.15.1.3 99096,99097 1fgxA 288 64.94 c.68.1.2 34508 1t15A 214 68.50 c.15.1.3,c.15.1.3 99067,99068 1igfH 221 69.45 b.1.1.1,b.1.1.2 19813,20923 1m54A 363 69.57 c.79.1.1 74463 1iuaA 83 74.20 g.35.1.1 71438 1yroB 286 75.55 c.68.1.2 123932 2ingX 213 75.72 1fr8A 288 76.51 c.68.1.2 34510 1n5oX 214 77.60 c.15.1.3,c.15.1.3 80033,80034 2aq4A 434 77.81 2pusA 852 78.79 1jbqA 435 79.92 c.79.1.1 62850 2c31A 568 80.72 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1ftsA 295 82.91 a.24.13.1,c.37.1.10 16968,32279 1n2tA 386 83.16 c.67.1.3 79858 2fn0A 437 84.09 d.161.1.1 133799 1eluA 390 84.78 c.67.1.3 34434 2pggA 774 86.12 1z8dA 842 88.10 1nx9A 652 88.56 b.18.1.13,c.69.1.21 92285,92286