# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 4.45e-10 c.69.1.27 99344 1jjfA 268 4.65e-10 c.69.1.2 66765 1fj2A 232 6.59e-10 c.69.1.14 34720 2i3dA 249 9.09e-10 2d5lA 706 1.53e-09 2o2gA 223 1.79e-09 1l7aA 318 2.64e-09 c.69.1.25 77772 1auoA 218 3.04e-09 c.69.1.14 34716 3bdiA 207 4.03e-09 1imjA 210 4.06e-09 c.69.1.23 71246 1jfrA 262 4.33e-09 c.69.1.16 34724 2hu5A 582 5.06e-09 b.69.7.2,c.69.1.33 136763,136764 2z3zA 706 5.73e-09 2jbwA 386 6.47e-09 1mtzA 293 6.77e-09 c.69.1.7 79467 2hm7A 310 6.83e-09 1u4nA 310 7.23e-09 c.69.1.2 113021 1orvA 728 7.27e-09 b.70.3.1,c.69.1.24 87354,87355 2h7cA 542 8.30e-09 c.69.1.1 136207 1lzlA 323 9.23e-09 c.69.1.2 78306 1thgA 544 1.56e-08 c.69.1.17 34763 1r88A 280 1.98e-08 c.69.1.3 97219 1p0iA 529 1.98e-08 c.69.1.1 93867 2r8bA 251 2.02e-08 2fukA 220 2.04e-08 1qe3A 489 2.04e-08 c.69.1.1 34630 1c7iA 489 2.08e-08 c.69.1.1 34632 1u2eA 289 2.19e-08 1pv1A 299 2.49e-08 c.69.1.34 111639 1ea5A 537 2.58e-08 c.69.1.1 34592 1zi8A 236 2.58e-08 1c4xA 285 2.77e-08 c.69.1.10 34684 2hdwA 367 2.96e-08 1gkkA 297 3.19e-08 c.69.1.2 65248 1c7jA 489 3.21e-08 c.69.1.1 34631 2ogtA 498 3.50e-08 1f0nA 285 3.81e-08 c.69.1.3 34636 1womA 271 4.19e-08 3bixA 574 4.32e-08 1jjiA 311 4.61e-08 c.69.1.2 66766 1wb4A 297 4.69e-08 c.69.1.2 120827 1j1iA 296 4.89e-08 c.69.1.10 83977 1b6g 310 4.92e-08 1h2xA 710 5.23e-08 b.69.7.1,c.69.1.4 76598,76599 1aqlA 532 6.88e-08 c.69.1.1 34627 1cr6B 554 7.31e-08 c.69.1.11,c.108.1.2 34688,43338 2ocgA 254 9.24e-08 2pblA 262 9.34e-08 1a88A 275 9.35e-08 c.69.1.12 34707 1o6gA 710 9.42e-08 b.69.7.1,c.69.1.4 81087,81088 2qm0A 275 9.50e-08 3bxpA 277 9.95e-08 1vlqA 337 1.12e-07 c.69.1.25 108848 1xfdA 723 1.13e-07 b.70.3.1,c.69.1.24 115251,115252 1broA 277 1.13e-07 c.69.1.12 34700 1b6gA 310 1.28e-07 c.69.1.8 34661 1thg 544 1.29e-07 1qtrA 317 1.32e-07 c.69.1.7 34660 1tqhA 247 1.45e-07 c.69.1.29 107225 1ede 310 1.46e-07 1brt 277 1.61e-07 2uz0A 263 1.71e-07 2bceA 585 1.73e-07 c.69.1.1 34625 1azwA 313 1.88e-07 c.69.1.7 34658 1zoiA 276 1.96e-07 1zd3A 555 2.08e-07 c.108.1.2,c.69.1.11 124930,124931 1xqwA 293 2.08e-07 1dqyA 283 2.22e-07 c.69.1.3 34640 1hkhA 279 2.47e-07 c.69.1.12 90628 1xklA 273 2.66e-07 c.69.1.20 115410 1din 236 2.75e-07 1uk8A 282 2.80e-07 c.69.1.10 107907 1dqzA 280 2.85e-07 c.69.1.3 34638 2o7rA 338 2.99e-07 1va4A 279 3.06e-07 c.69.1.12 108458 2bklA 695 3.23e-07 1llfA 534 3.30e-07 c.69.1.17 78094 2b20A 403 3.31e-07 b.1.18.20,c.69.1.2 127685,127686 2qmqA 286 3.39e-07 3c5vA 316 3.50e-07 1q0rA 298 3.89e-07 c.69.1.28 95508 1bn7A 294 3.95e-07 c.69.1.8 34677 2og1A 286 4.01e-07 1e8nA 710 4.04e-07 b.69.7.1,c.69.1.4 27675,34643 1ggvA 232 4.09e-07 c.69.1.9 34683 1cqwA 295 4.27e-07 c.69.1.8 34679 2pujA 286 4.57e-07 1a8uA 277 5.55e-07 c.69.1.12 34703 3b5eA 223 5.95e-07 1yasA 257 6.03e-07 c.69.1.20 34801 1r1dA 247 6.11e-07 c.69.1.29 96813 2puhA 286 6.33e-07 1h2wA 710 6.88e-07 b.69.7.1,c.69.1.4 76596,76597 1brtA 277 7.54e-07 c.69.1.12 34699 1ehyA 294 7.81e-07 c.69.1.11 34693 1bn6A 294 8.02e-07 c.69.1.8 34678 1cv2A 296 8.41e-07 c.69.1.8 34680 1a8sA 273 8.92e-07 c.69.1.12 34710 2rhwA 283 9.98e-07 1yr2A 741 1.02e-06 1dx4A 586 1.08e-06 c.69.1.1 34622 1m33A 258 1.11e-06 c.69.1.26 78514 1qj4A 257 1.15e-06 c.69.1.20 34796 2rauA 354 1.19e-06 1jkmA 358 1.26e-06 c.69.1.2 34633 1ukcA 522 1.28e-06 c.69.1.17 107911 1wm1A 317 1.41e-06 c.69.1.7 109405 3c8dA 403 1.42e-06 1cleA 534 1.49e-06 c.69.1.17 34771 2e3jA 356 1.77e-06 2cjpA 328 1.95e-06 3bwxA 285 2.27e-06 2bce 581 2.30e-06 2psdA 318 2.31e-06 2qjwA 176 2.32e-06 1iz7A 295 2.50e-06 c.69.1.8 76982 3bf7A 255 2.59e-06 1y37A 304 2.83e-06 1r3dA 264 2.88e-06 c.69.1.35 111680 1a8qA 274 3.11e-06 c.69.1.12 34702 1mj5A 302 3.15e-06 c.69.1.8 91285 2fx5A 258 3.78e-06 2yysA 286 5.04e-06 2o2iA 300 5.88e-06 2d80A 318 9.28e-06 1cvlA 319 9.97e-06 c.69.1.18 34786 2qvbA 297 1.15e-05 1qo7A 394 1.33e-05 c.69.1.11 34697 1ys1X 320 1.38e-05 1ju3A 583 1.65e-05 b.18.1.13,c.69.1.21 67300,67301 1qfmA 710 1.65e-05 b.69.7.1,c.69.1.4 27673,34641 2qruA 274 1.88e-05 1tahA 318 2.51e-05 c.69.1.18 34775 2d81A 318 2.84e-05 2pl5A 366 3.65e-05 1i6wA 181 4.02e-05 c.69.1.18 61859 2gzsA 278 4.12e-05 1mpxA 615 4.40e-05 b.18.1.13,c.69.1.21 85041,85042 3bdvA 191 4.94e-05 1vkhA 273 7.51e-05 c.69.1.32 108662 1k8qA 377 8.02e-05 c.69.1.6 72177 1cvl 319 9.29e-05 1ispA 181 0.000125 c.69.1.18 76778 1hlgA 371 0.000171 c.69.1.6 34656 1lnsA 763 0.000188 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1qlwA 328 0.000198 c.69.1.15 34722 2qs9A 194 0.000221 2b61A 377 0.000310 2veoA 441 0.000379 1thtA 305 0.000450 c.69.1.13 34711 1mnaA 298 0.000545 c.69.1.22 79322 1ycdA 243 0.000732 1mo2A 294 0.000809 c.69.1.22 79331 1tcaA 317 0.000981 c.69.1.17 34726 1gpl 432 0.001345 1bu8A 452 0.001401 b.12.1.2,c.69.1.19 23647,34795 1kezA 300 0.002765 c.69.1.22 68546 1tca 317 0.003038 1hplA 449 0.007241 b.12.1.2,c.69.1.19 23639,34787 1uxoA 192 0.01189 c.69.1.31 108121 2q0xA 335 0.01760 1pjaA 302 0.02463 c.69.1.13 94758 1tib 269 0.1166 1whsA 255 0.2919 c.69.1.5 34649 1ivyA 452 0.3826 c.69.1.5 34654 1bcsA 263 0.3864 c.69.1.5 34647 1whtA 256 0.3912 c.69.1.5 34646 1gt6A 269 0.4732 c.69.1.17 76342 1eiwA 111 0.5620 c.23.3.1 31130 1tibA 269 0.6107 c.69.1.17 34738 2hfkA 319 0.7742 1uswA 260 0.7766 c.69.1.17 99895 2bjhA 260 1.181 1ei9A 279 1.207 c.69.1.13 34713 1uwcA 261 1.311 c.69.1.17 100101 3tglA 269 1.530 c.69.1.17 34733 1ku0A 388 2.017 c.69.1.18 72994 1ac5A 483 2.141 c.69.1.5 34653 1ac5 483 2.177 1j8mF 297 2.439 a.24.13.1,c.37.1.10 62742,62743 2oryA 346 3.029 1lgyA 269 4.597 c.69.1.17 34758 2cb9A 244 5.472 2qvpA 275 5.931 2dsnA 387 6.231 1ic6A 279 6.401 c.41.1.1 62257 1o2dA 371 9.578 e.22.1.2 86591 2pgnA 589 10.60 1i52A 236 14.82 c.68.1.13 61767 2q7xA 326 15.63 3cdxA 354 18.90 2z5gA 387 20.29 2ez9A 603 20.38 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1ceoA 343 20.98 c.1.8.3 28808 1rz3A 201 21.31 c.37.1.6 98132 2b81A 323 21.49 2i7cA 283 23.37 1e8cA 498 23.63 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1drwA 273 24.45 c.2.1.3,d.81.1.3 30057,39972 3c8uA 208 25.17 1p9lA 245 25.51 c.2.1.3,d.81.1.3 94393,94394 1t9bA 677 25.67 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 3ckkA 235 26.57 2qm8A 337 27.66 2g1pA 278 27.99 2d73A 738 28.57 1j3gA 187 29.66 d.118.1.1 77075 2px6A 316 33.56 2yvuA 186 36.40 1kbjA 412 36.58 c.1.4.1 72280 1sq5A 308 36.62 c.37.1.6 105882 2djiA 590 36.74 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 3c6kA 381 36.95 2bz1A 196 37.08 c.144.1.1 129532 2o07A 304 37.47 c.66.1.17 138862 2ctc 307 40.24 1ybhA 590 42.30 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2jejA 358 45.82 d.240.1.1,e.8.1.7 138284,138285 1qpbA 563 45.88 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1poxA 585 46.75 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1uirA 314 46.93 c.66.1.17 99429 2fcrA 173 47.91 c.23.5.1 31151 1z5rA 306 48.21 c.56.5.1 124488 2p5tB 253 49.25 1jmkC 230 49.36 c.69.1.22 71747 1lehA 364 50.44 c.2.1.7,c.58.1.1 30268,33916 2qt1A 207 50.67 2csuA 457 52.98 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1pydA 556 54.70 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1ne7A 289 57.78 c.124.1.1 91833 1m7gA 211 57.95 c.37.1.4 78724 1qnrA 344 58.86 c.1.8.3 28834 2nxoA 291 61.57 1bunB 61 64.05 g.8.1.1 44552 1bu6O 501 64.56 c.55.1.4,c.55.1.4 33499,33500 1gs5A 258 64.75 c.73.1.2 70395 1b3bA 415 65.42 c.2.1.7,c.58.1.1 30244,33892 1cz1A 394 67.83 c.1.8.3 28839 3b2yA 275 68.14 2c31A 568 68.20 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2am1A 454 70.08 1yixA 265 70.20 c.1.9.12 123371 1jakA 512 70.99 c.1.8.6,d.92.2.1 66472,66473 1fc4A 401 71.59 c.67.1.4 59760 1cex 214 71.70 2dpmA 284 71.79 c.66.1.28 34246 2bmaA 470 72.44 1dptA 117 72.96 d.80.1.3 39862 1e32A 458 73.96 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1wviA 257 74.19 c.108.1.14 114915 2o6lA 170 74.30 1ezwA 349 75.20 c.1.16.3 29558 2ax4A 198 75.54 1j7xA 302 76.83 c.14.1.2 66425 1eceA 358 78.43 c.1.8.3 28813 1vmaA 306 78.99 a.24.13.1,c.37.1.10 108887,108888 2p6pA 384 80.74 1vjrA 271 80.87 c.108.1.14 100832 1owqA 361 80.93 c.1.8.5,d.26.3.1 104041,104042 1bavA 309 81.10 c.56.5.1 33806 2hx1A 284 81.54 1f5sA 211 82.35 c.108.1.4 59656 1qw9A 502 82.78 b.71.1.2,c.1.8.3 96466,96467 2bkxA 242 83.26 1b26A 416 83.29 c.2.1.7,c.58.1.1 30232,33880 2zf5O 497 84.63 1o08A 221 85.18 c.108.1.6 86525 1hzdA 272 85.82 c.14.1.3 65969 1fs5A 266 86.38 c.124.1.1 65044 1eqcA 394 86.55 c.1.8.3 28811 2couA 109 88.54