# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jjfA 268 5.03e-11 c.69.1.2 66765 1fj2A 232 6.34e-11 c.69.1.14 34720 1ufoA 238 7.25e-11 c.69.1.27 99344 2i3dA 249 1.93e-10 2d5lA 706 2.18e-10 2o2gA 223 2.90e-10 1l7aA 318 3.55e-10 c.69.1.25 77772 1auoA 218 4.19e-10 c.69.1.14 34716 2jbwA 386 5.41e-10 3bdiA 207 5.89e-10 1jfrA 262 6.16e-10 c.69.1.16 34724 1imjA 210 6.77e-10 c.69.1.23 71246 2hu5A 582 7.63e-10 b.69.7.2,c.69.1.33 136763,136764 2z3zA 706 9.39e-10 1mtzA 293 1.03e-09 c.69.1.7 79467 1lzlA 323 1.07e-09 c.69.1.2 78306 1orvA 728 1.30e-09 b.70.3.1,c.69.1.24 87354,87355 1r88A 280 1.30e-09 c.69.1.3 97219 2hm7A 310 1.68e-09 1thgA 544 1.86e-09 c.69.1.17 34763 2h7cA 542 1.88e-09 c.69.1.1 136207 1u4nA 310 2.04e-09 c.69.1.2 113021 2fukA 220 2.51e-09 1pv1A 299 3.60e-09 c.69.1.34 111639 1qe3A 489 3.90e-09 c.69.1.1 34630 1f0nA 285 4.04e-09 c.69.1.3 34636 2r8bA 251 4.07e-09 1p0iA 529 4.56e-09 c.69.1.1 93867 1c4xA 285 4.95e-09 c.69.1.10 34684 1zi8A 236 5.10e-09 1womA 271 5.17e-09 2hdwA 367 5.25e-09 1u2eA 289 5.35e-09 1c7iA 489 5.83e-09 c.69.1.1 34632 1gkkA 297 6.18e-09 c.69.1.2 65248 2ogtA 498 6.45e-09 1c7jA 489 7.72e-09 c.69.1.1 34631 1j1iA 296 7.82e-09 c.69.1.10 83977 1wb4A 297 8.40e-09 c.69.1.2 120827 2ocgA 254 8.47e-09 1jjiA 311 1.00e-08 c.69.1.2 66766 3bixA 574 1.11e-08 1ea5A 537 1.12e-08 c.69.1.1 34592 1b6g 310 1.50e-08 3bxpA 277 1.59e-08 1thg 544 1.95e-08 1cr6B 554 1.97e-08 c.69.1.11,c.108.1.2 34688,43338 2pblA 262 1.99e-08 1h2xA 710 2.12e-08 b.69.7.1,c.69.1.4 76598,76599 1a88A 275 2.14e-08 c.69.1.12 34707 2qm0A 275 2.24e-08 1aqlA 532 2.28e-08 c.69.1.1 34627 1o6gA 710 2.75e-08 b.69.7.1,c.69.1.4 81087,81088 1broA 277 2.75e-08 c.69.1.12 34700 2uz0A 263 2.95e-08 1vlqA 337 3.03e-08 c.69.1.25 108848 1dqyA 283 3.19e-08 c.69.1.3 34640 2b20A 403 3.19e-08 b.1.18.20,c.69.1.2 127685,127686 1tqhA 247 3.22e-08 c.69.1.29 107225 1xfdA 723 3.61e-08 b.70.3.1,c.69.1.24 115251,115252 1brt 277 3.71e-08 1qtrA 317 3.93e-08 c.69.1.7 34660 1dqzA 280 3.95e-08 c.69.1.3 34638 1din 236 3.99e-08 1ede 310 4.33e-08 1azwA 313 4.34e-08 c.69.1.7 34658 1b6gA 310 4.41e-08 c.69.1.8 34661 1hkhA 279 4.72e-08 c.69.1.12 90628 1xqwA 293 4.87e-08 1zoiA 276 5.13e-08 1llfA 534 5.35e-08 c.69.1.17 78094 1va4A 279 5.59e-08 c.69.1.12 108458 1zd3A 555 5.61e-08 c.108.1.2,c.69.1.11 124930,124931 2bceA 585 5.68e-08 c.69.1.1 34625 1xklA 273 5.79e-08 c.69.1.20 115410 2bklA 695 6.92e-08 1ggvA 232 6.94e-08 c.69.1.9 34683 1uk8A 282 7.09e-08 c.69.1.10 107907 2qmqA 286 8.59e-08 2og1A 286 8.84e-08 1q0rA 298 9.69e-08 c.69.1.28 95508 3b5eA 223 1.05e-07 1r1dA 247 1.07e-07 c.69.1.29 96813 3c5vA 316 1.12e-07 1cqwA 295 1.14e-07 c.69.1.8 34679 2o7rA 338 1.17e-07 1bn7A 294 1.27e-07 c.69.1.8 34677 1cv2A 296 1.32e-07 c.69.1.8 34680 2pujA 286 1.35e-07 1a8uA 277 1.58e-07 c.69.1.12 34703 1yasA 257 1.65e-07 c.69.1.20 34801 1e8nA 710 1.77e-07 b.69.7.1,c.69.1.4 27675,34643 1brtA 277 1.83e-07 c.69.1.12 34699 1m33A 258 1.88e-07 c.69.1.26 78514 2puhA 286 1.97e-07 1ehyA 294 2.12e-07 c.69.1.11 34693 1jkmA 358 2.33e-07 c.69.1.2 34633 1a8sA 273 2.50e-07 c.69.1.12 34710 1ukcA 522 2.64e-07 c.69.1.17 107911 1yr2A 741 2.68e-07 1bn6A 294 2.69e-07 c.69.1.8 34678 2rauA 354 3.12e-07 1h2wA 710 3.20e-07 b.69.7.1,c.69.1.4 76596,76597 3c8dA 403 3.31e-07 1qj4A 257 3.38e-07 c.69.1.20 34796 1wm1A 317 3.68e-07 c.69.1.7 109405 2rhwA 283 3.68e-07 1cleA 534 4.40e-07 c.69.1.17 34771 1dx4A 586 5.18e-07 c.69.1.1 34622 2psdA 318 5.29e-07 2cjpA 328 5.56e-07 1iz7A 295 5.67e-07 c.69.1.8 76982 1a8qA 274 5.96e-07 c.69.1.12 34702 2e3jA 356 6.13e-07 1mj5A 302 6.33e-07 c.69.1.8 91285 2qjwA 176 7.10e-07 3bwxA 285 7.59e-07 1y37A 304 8.25e-07 3bf7A 255 8.49e-07 1r3dA 264 1.03e-06 c.69.1.35 111680 2fx5A 258 1.10e-06 2bce 581 1.15e-06 2yysA 286 1.34e-06 2o2iA 300 1.63e-06 1cvlA 319 2.84e-06 c.69.1.18 34786 2d80A 318 3.11e-06 2qvbA 297 3.13e-06 1ju3A 583 3.23e-06 b.18.1.13,c.69.1.21 67300,67301 2qruA 274 3.73e-06 1qo7A 394 4.13e-06 c.69.1.11 34697 1ys1X 320 4.22e-06 2pl5A 366 7.52e-06 2d81A 318 8.32e-06 1tahA 318 8.75e-06 c.69.1.18 34775 1qfmA 710 8.97e-06 b.69.7.1,c.69.1.4 27673,34641 2gzsA 278 1.33e-05 1mpxA 615 1.44e-05 b.18.1.13,c.69.1.21 85041,85042 1i6wA 181 1.66e-05 c.69.1.18 61859 1k8qA 377 2.20e-05 c.69.1.6 72177 1vkhA 273 3.18e-05 c.69.1.32 108662 1cvl 319 3.28e-05 3bdvA 191 3.55e-05 1lnsA 763 3.63e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1hlgA 371 5.04e-05 c.69.1.6 34656 1ispA 181 5.20e-05 c.69.1.18 76778 2qs9A 194 6.64e-05 2b61A 377 9.39e-05 1qlwA 328 0.000111 c.69.1.15 34722 1mnaA 298 0.000119 c.69.1.22 79322 1thtA 305 0.000124 c.69.1.13 34711 2veoA 441 0.000144 1mo2A 294 0.000178 c.69.1.22 79331 1ycdA 243 0.000440 1bu8A 452 0.000456 b.12.1.2,c.69.1.19 23647,34795 1tcaA 317 0.000461 c.69.1.17 34726 1gpl 432 0.000521 1kezA 300 0.001324 c.69.1.22 68546 1tca 317 0.001732 1hplA 449 0.003871 b.12.1.2,c.69.1.19 23639,34787 1uxoA 192 0.007910 c.69.1.31 108121 2q0xA 335 0.01032 1pjaA 302 0.01637 c.69.1.13 94758 1tib 269 0.05067 1ivyA 452 0.08985 c.69.1.5 34654 1whtA 256 0.09409 c.69.1.5 34646 1bcsA 263 0.1289 c.69.1.5 34647 1whsA 255 0.1427 c.69.1.5 34649 1gt6A 269 0.1884 c.69.1.17 76342 1eiwA 111 0.2712 c.23.3.1 31130 1tibA 269 0.3462 c.69.1.17 34738 1uswA 260 0.4159 c.69.1.17 99895 1ac5A 483 0.5222 c.69.1.5 34653 2bjhA 260 0.5693 1ei9A 279 0.6649 c.69.1.13 34713 1uwcA 261 0.6990 c.69.1.17 100101 3tglA 269 0.7764 c.69.1.17 34733 2hfkA 319 1.043 1j8mF 297 1.331 a.24.13.1,c.37.1.10 62742,62743 1ac5 483 1.466 1ku0A 388 1.866 c.69.1.18 72994 2oryA 346 2.335 2cb9A 244 2.428 1ic6A 279 2.828 c.41.1.1 62257 1lgyA 269 2.887 c.69.1.17 34758 1i52A 236 4.430 c.68.1.13 61767 2dsnA 387 4.994 2pgnA 589 6.871 2qvpA 275 7.474 1o2dA 371 8.280 e.22.1.2 86591 2q7xA 326 11.19 2z5gA 387 14.92 3c8uA 208 18.36 2b81A 323 20.50 1e8cA 498 20.60 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2i7cA 283 21.11 2g1pA 278 21.54 3cdxA 354 22.21 2qt1A 207 23.53 2d73A 738 23.77 1rz3A 201 24.22 c.37.1.6 98132 1drwA 273 24.94 c.2.1.3,d.81.1.3 30057,39972 1sq5A 308 26.32 c.37.1.6 105882 2qm8A 337 29.30 2px6A 316 29.59 2ctc 307 29.65 1ceoA 343 30.01 c.1.8.3 28808 1uirA 314 30.46 c.66.1.17 99429 1j3gA 187 30.55 d.118.1.1 77075 1p9lA 245 31.66 c.2.1.3,d.81.1.3 94393,94394 2o07A 304 32.08 c.66.1.17 138862 3c6kA 381 33.20 2yvuA 186 33.38 2ez9A 603 33.85 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1dptA 117 36.42 d.80.1.3 39862 2bz1A 196 37.61 c.144.1.1 129532 1t9bA 677 38.16 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1ne7A 289 38.55 c.124.1.1 91833 1bunB 61 41.26 g.8.1.1 44552 1qnrA 344 42.34 c.1.8.3 28834 2j0wA 449 42.92 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 1kbjA 412 44.40 c.1.4.1 72280 1eceA 358 46.26 c.1.8.3 28813 2bmaA 470 48.15 1vmaA 306 49.12 a.24.13.1,c.37.1.10 108887,108888 2p5tB 253 53.71 1z5rA 306 54.82 c.56.5.1 124488 1m7gA 211 55.33 c.37.1.4 78724 1bu6O 501 56.96 c.55.1.4,c.55.1.4 33499,33500 2hszA 243 57.90 c.108.1.6 136726 2ax4A 198 58.18 1wviA 257 58.26 c.108.1.14 114915 2ag6A 314 58.29 1ybhA 590 59.55 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2djiA 590 60.40 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1cz1A 394 60.54 c.1.8.3 28839 1ekzA 76 61.14 d.50.1.1 38783 2jejA 358 61.43 d.240.1.1,e.8.1.7 138284,138285 2hdoA 209 62.75 c.108.1.6 136345 3c3pA 210 62.91 1pydA 556 63.42 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2nxoA 291 63.46 2z20A 432 63.79 1x05A 129 63.95 b.55.1.1 121543 1o08A 221 64.85 c.108.1.6 86525 1uj2A 252 65.42 c.37.1.6 99452 1b3bA 415 66.56 c.2.1.7,c.58.1.1 30244,33892 1jakA 512 67.22 c.1.8.6,d.92.2.1 66472,66473 2fcrA 173 67.44 c.23.5.1 31151 2dpmA 284 68.74 c.66.1.28 34246 1j7xA 302 70.66 c.14.1.2 66425 2oasA 436 70.89 3b2yA 275 71.11 1zr0B 63 72.37 1gs5A 258 73.49 c.73.1.2 70395 1x7oA 287 73.94 1kthA 58 74.09 g.8.1.1 68863 2dyuA 334 74.71 2hx1A 284 75.33 1qpbA 563 75.66 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1vjrA 271 75.73 c.108.1.14 100832 1esmA 316 77.29 c.37.1.6 31953 1e32A 458 77.30 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1eqcA 394 77.31 c.1.8.3 28811 1eg5A 384 77.47 c.67.1.3 34429 2zf5O 497 78.67 1jmkC 230 79.55 c.69.1.22 71747 1g6xA 58 79.96 g.8.1.1 60320 1sh7A 284 80.26 1to6A 371 83.76 c.141.1.1 107170 1f5sA 211 85.20 c.108.1.4 59656 2czqA 205 85.96 1db3A 372 86.08 c.2.1.2 29813 2i6dA 257 87.19 2fywA 267 87.21 c.135.1.1 134408 1mkyA 439 87.59 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1aalA 58 87.69 g.8.1.1 44472 1vjzA 341 87.88 c.1.8.3 100838 1d3gA 367 88.08 c.1.4.1 28600 1lehA 364 88.22 c.2.1.7,c.58.1.1 30268,33916 1bavA 309 88.32 c.56.5.1 33806 3b9qA 302 89.07 2cftA 298 90.00