# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 1.48e-11 c.69.1.27 99344 1fj2A 232 2.38e-11 c.69.1.14 34720 2i3dA 249 4.51e-11 1jjfA 268 5.07e-11 c.69.1.2 66765 2d5lA 706 6.38e-11 2o2gA 223 6.98e-11 1l7aA 318 1.00e-10 c.69.1.25 77772 1auoA 218 1.45e-10 c.69.1.14 34716 2jbwA 386 2.93e-10 3bdiA 207 2.96e-10 1mtzA 293 3.29e-10 c.69.1.7 79467 2h7cA 542 3.41e-10 c.69.1.1 136207 1imjA 210 3.53e-10 c.69.1.23 71246 1jfrA 262 3.74e-10 c.69.1.16 34724 2z3zA 706 4.46e-10 2hu5A 582 5.32e-10 b.69.7.2,c.69.1.33 136763,136764 1thgA 544 5.34e-10 c.69.1.17 34763 1lzlA 323 5.82e-10 c.69.1.2 78306 1orvA 728 7.00e-10 b.70.3.1,c.69.1.24 87354,87355 1u4nA 310 7.20e-10 c.69.1.2 113021 2hm7A 310 8.94e-10 2fukA 220 9.85e-10 1qe3A 489 1.03e-09 c.69.1.1 34630 2r8bA 251 1.19e-09 1c7iA 489 1.29e-09 c.69.1.1 34632 1p0iA 529 1.29e-09 c.69.1.1 93867 2ogtA 498 1.59e-09 1ea5A 537 1.80e-09 c.69.1.1 34592 1r88A 280 1.92e-09 c.69.1.3 97219 1u2eA 289 1.92e-09 1zi8A 236 2.00e-09 1c7jA 489 2.11e-09 c.69.1.1 34631 3bixA 574 2.15e-09 1j1iA 296 2.58e-09 c.69.1.10 83977 1pv1A 299 2.83e-09 c.69.1.34 111639 1f0nA 285 3.13e-09 c.69.1.3 34636 1c4xA 285 3.16e-09 c.69.1.10 34684 1womA 271 3.23e-09 2hdwA 367 3.36e-09 2pblA 262 4.21e-09 1gkkA 297 4.84e-09 c.69.1.2 65248 1wb4A 297 4.86e-09 c.69.1.2 120827 1jjiA 311 5.16e-09 c.69.1.2 66766 1aqlA 532 5.17e-09 c.69.1.1 34627 3bxpA 277 5.56e-09 1thg 544 6.07e-09 1cr6B 554 6.32e-09 c.69.1.11,c.108.1.2 34688,43338 1b6g 310 6.91e-09 1h2xA 710 8.10e-09 b.69.7.1,c.69.1.4 76598,76599 2ocgA 254 8.12e-09 1a88A 275 9.15e-09 c.69.1.12 34707 2uz0A 263 1.00e-08 1zoiA 276 1.01e-08 1tqhA 247 1.06e-08 c.69.1.29 107225 1vlqA 337 1.24e-08 c.69.1.25 108848 1qtrA 317 1.28e-08 c.69.1.7 34660 1llfA 534 1.48e-08 c.69.1.17 78094 1xfdA 723 1.49e-08 b.70.3.1,c.69.1.24 115251,115252 1broA 277 1.55e-08 c.69.1.12 34700 1o6gA 710 1.65e-08 b.69.7.1,c.69.1.4 81087,81088 2bceA 585 1.76e-08 c.69.1.1 34625 2qm0A 275 1.76e-08 1ede 310 2.06e-08 1brt 277 2.17e-08 1b6gA 310 2.19e-08 c.69.1.8 34661 2rauA 354 2.28e-08 1din 236 2.38e-08 1zd3A 555 2.45e-08 c.108.1.2,c.69.1.11 124930,124931 1xqwA 293 2.49e-08 1dqyA 283 2.76e-08 c.69.1.3 34640 1azwA 313 2.80e-08 c.69.1.7 34658 3c5vA 316 2.84e-08 2o7rA 338 2.88e-08 1dqzA 280 2.91e-08 c.69.1.3 34638 2qmqA 286 3.07e-08 1va4A 279 3.13e-08 c.69.1.12 108458 1uk8A 282 3.60e-08 c.69.1.10 107907 1hkhA 279 3.73e-08 c.69.1.12 90628 3b5eA 223 4.07e-08 1ggvA 232 4.40e-08 c.69.1.9 34683 2b20A 403 4.84e-08 b.1.18.20,c.69.1.2 127685,127686 1r1dA 247 4.98e-08 c.69.1.29 96813 2og1A 286 4.99e-08 1cqwA 295 5.21e-08 c.69.1.8 34679 1m33A 258 6.20e-08 c.69.1.26 78514 1bn7A 294 6.54e-08 c.69.1.8 34677 2bklA 695 7.28e-08 2pujA 286 7.72e-08 1cv2A 296 7.76e-08 c.69.1.8 34680 1q0rA 298 8.19e-08 c.69.1.28 95508 1xklA 273 8.55e-08 c.69.1.20 115410 1bn6A 294 9.74e-08 c.69.1.8 34678 1cleA 534 1.02e-07 c.69.1.17 34771 1a8uA 277 1.03e-07 c.69.1.12 34703 1ehyA 294 1.12e-07 c.69.1.11 34693 1ukcA 522 1.16e-07 c.69.1.17 107911 1a8sA 273 1.18e-07 c.69.1.12 34710 1yr2A 741 1.20e-07 1e8nA 710 1.21e-07 b.69.7.1,c.69.1.4 27675,34643 1yasA 257 1.23e-07 c.69.1.20 34801 2puhA 286 1.35e-07 1brtA 277 1.44e-07 c.69.1.12 34699 2qjwA 176 1.64e-07 1dx4A 586 1.71e-07 c.69.1.1 34622 1jkmA 358 1.89e-07 c.69.1.2 34633 2rhwA 283 1.98e-07 2e3jA 356 2.00e-07 1h2wA 710 2.03e-07 b.69.7.1,c.69.1.4 76596,76597 1iz7A 295 2.15e-07 c.69.1.8 76982 1wm1A 317 2.42e-07 c.69.1.7 109405 2cjpA 328 2.55e-07 1y37A 304 2.65e-07 2psdA 318 2.73e-07 1qj4A 257 3.00e-07 c.69.1.20 34796 1mj5A 302 3.20e-07 c.69.1.8 91285 3c8dA 403 3.24e-07 1r3dA 264 3.30e-07 c.69.1.35 111680 2bce 581 3.69e-07 3bf7A 255 4.53e-07 1a8qA 274 4.65e-07 c.69.1.12 34702 2o2iA 300 4.70e-07 3bwxA 285 5.29e-07 2fx5A 258 6.55e-07 2yysA 286 7.17e-07 2qvbA 297 9.67e-07 1cvlA 319 1.08e-06 c.69.1.18 34786 2d80A 318 1.38e-06 1ys1X 320 1.56e-06 1tahA 318 3.18e-06 c.69.1.18 34775 1ju3A 583 4.00e-06 b.18.1.13,c.69.1.21 67300,67301 1qo7A 394 4.32e-06 c.69.1.11 34697 2pl5A 366 4.37e-06 2d81A 318 4.65e-06 2qruA 274 6.24e-06 3bdvA 191 6.50e-06 1i6wA 181 8.07e-06 c.69.1.18 61859 1qfmA 710 9.59e-06 b.69.7.1,c.69.1.4 27673,34641 1cvl 319 1.57e-05 2gzsA 278 1.74e-05 1mpxA 615 2.08e-05 b.18.1.13,c.69.1.21 85041,85042 1lnsA 763 2.09e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ispA 181 2.64e-05 c.69.1.18 76778 1vkhA 273 3.40e-05 c.69.1.32 108662 2b61A 377 8.15e-05 1k8qA 377 8.74e-05 c.69.1.6 72177 1mnaA 298 0.000113 c.69.1.22 79322 1qlwA 328 0.000120 c.69.1.15 34722 1thtA 305 0.000130 c.69.1.13 34711 1hlgA 371 0.000175 c.69.1.6 34656 2qs9A 194 0.000184 1ycdA 243 0.000195 1bu8A 452 0.000197 b.12.1.2,c.69.1.19 23647,34795 1mo2A 294 0.000221 c.69.1.22 79331 2veoA 441 0.000231 1tcaA 317 0.000366 c.69.1.17 34726 1gpl 432 0.000387 1tca 317 0.001586 1kezA 300 0.002088 c.69.1.22 68546 1hplA 449 0.002546 b.12.1.2,c.69.1.19 23639,34787 1uxoA 192 0.006588 c.69.1.31 108121 2q0xA 335 0.009304 1pjaA 302 0.009862 c.69.1.13 94758 1tib 269 0.1152 1ivyA 452 0.2454 c.69.1.5 34654 1whtA 256 0.2578 c.69.1.5 34646 1bcsA 263 0.4090 c.69.1.5 34647 1eiwA 111 0.4631 c.23.3.1 31130 1gt6A 269 0.5078 c.69.1.17 76342 1tibA 269 0.5288 c.69.1.17 34738 1whsA 255 0.5353 c.69.1.5 34649 2hfkA 319 0.6089 1uswA 260 0.6892 c.69.1.17 99895 1uwcA 261 1.034 c.69.1.17 100101 1ei9A 279 1.129 c.69.1.13 34713 3tglA 269 1.159 c.69.1.17 34733 2bjhA 260 1.223 1ku0A 388 2.002 c.69.1.18 72994 1j8mF 297 2.072 a.24.13.1,c.37.1.10 62742,62743 1lgyA 269 2.288 c.69.1.17 34758 2cb9A 244 2.545 2oryA 346 2.861 1i52A 236 3.810 c.68.1.13 61767 1ac5A 483 4.323 c.69.1.5 34653 1ic6A 279 4.636 c.41.1.1 62257 1ac5 483 4.907 2qvpA 275 5.086 2dsnA 387 5.116 1o2dA 371 11.43 e.22.1.2 86591 1e8cA 498 13.50 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2pgnA 589 14.35 3ckkA 235 14.96 1j3gA 187 16.13 d.118.1.1 77075 2z5gA 387 16.24 2fywA 267 16.50 c.135.1.1 134408 2q7xA 326 17.01 1bunB 61 19.23 g.8.1.1 44552 1drwA 273 20.21 c.2.1.3,d.81.1.3 30057,39972 2g1pA 278 20.61 1ceoA 343 22.28 c.1.8.3 28808 2jejA 358 23.69 d.240.1.1,e.8.1.7 138284,138285 2b81A 323 23.70 2d73A 738 27.25 1m41A 380 29.02 c.1.16.4 78595 2yvuA 186 30.41 1ezwA 349 30.43 c.1.16.3 29558 1rz3A 201 31.84 c.37.1.6 98132 1t9bA 677 34.72 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 2hx1A 284 34.98 2ez9A 603 35.24 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1eceA 358 35.62 c.1.8.3 28813 1zr0B 63 36.85 1jmkC 230 37.07 c.69.1.22 71747 1qpbA 563 37.97 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1poxA 585 39.68 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 3c6kA 381 40.13 1lehA 364 40.77 c.2.1.7,c.58.1.1 30268,33916 1b3bA 415 40.84 c.2.1.7,c.58.1.1 30244,33892 2px6A 316 41.78 3c8uA 208 42.69 1ybhA 590 42.71 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1kthA 58 42.79 g.8.1.1 68863 2bz1A 196 44.36 c.144.1.1 129532 2dpmA 284 45.59 c.66.1.28 34246 1z0nA 96 46.39 3cdxA 354 46.78 1g6xA 58 48.21 g.8.1.1 60320 1gs5A 258 48.49 c.73.1.2 70395 1aalA 58 50.68 g.8.1.1 44472 2cmuA 342 51.89 1to6A 371 52.07 c.141.1.1 107170 2djiA 590 52.12 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1ekzA 76 52.59 d.50.1.1 38783 1m7gA 211 53.27 c.37.1.4 78724 2p5tB 253 54.01 1m1sA 116 54.02 b.1.11.2 84747 1z5rA 306 54.38 c.56.5.1 124488 1p9lA 245 58.64 c.2.1.3,d.81.1.3 94393,94394 2q62A 247 59.39 2ivfA 976 59.56 1b26A 416 60.51 c.2.1.7,c.58.1.1 30232,33880 1jakA 512 61.38 c.1.8.6,d.92.2.1 66472,66473 1ne7A 289 61.40 c.124.1.1 91833 1pydA 556 61.47 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1x05A 129 61.78 b.55.1.1 121543 2i7cA 283 62.20 2ctc 307 62.28 1h0hA 977 63.14 b.52.2.2,c.81.1.1 76435,76436 1wviA 257 65.20 c.108.1.14 114915 1dptA 117 66.36 d.80.1.3 39862 1d3gA 367 68.07 c.1.4.1 28600 2bmaA 470 68.40 1fc4A 401 68.74 c.67.1.4 59760 1qw9A 502 69.75 b.71.1.2,c.1.8.3 96466,96467 1qnrA 344 70.99 c.1.8.3 28834 1x9iA 302 71.47 c.80.1.1 114997 1aapA 58 71.64 g.8.1.1 44543 2csuA 457 71.96 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1kbjA 412 72.01 c.1.4.1 72280 2am1A 454 72.17 2fi3I 58 73.59 1fs5A 266 73.80 c.124.1.1 65044 2zf5O 497 74.12 1e32A 458 74.17 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 2vhhA 405 74.36 2qt1A 207 76.21 1eg5A 384 76.30 c.67.1.3 34429 1k89 449 78.30 1vk2A 204 79.07 c.18.1.2 100845 1c7sA 858 79.60 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1gx1A 160 80.00 d.79.5.1 70675 1db3A 372 80.28 c.2.1.2 29813 2ax4A 198 81.23 1ag9A 175 81.39 c.23.5.1 31178 2nxoA 291 81.63 1v4vA 376 81.79 c.87.1.3 100313 1v2dA 381 85.73 c.67.1.1 108281 1f5sA 211 86.25 c.108.1.4 59656 2pooA 355 87.07 b.68.3.1 27626 1jidA 128 88.73 d.201.1.1 66735 1hzdA 272 89.04 c.14.1.3 65969 1d6jA 211 89.72 c.37.1.4 31940