# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jjfA 268 7.90e-12 c.69.1.2 66765 1fj2A 232 1.22e-11 c.69.1.14 34720 1ufoA 238 1.34e-11 c.69.1.27 99344 2d5lA 706 2.15e-11 2i3dA 249 2.68e-11 2o2gA 223 3.80e-11 2z3zA 706 6.71e-11 1l7aA 318 9.32e-11 c.69.1.25 77772 1auoA 218 9.39e-11 c.69.1.14 34716 3bdiA 207 1.40e-10 2jbwA 386 1.59e-10 1mtzA 293 1.68e-10 c.69.1.7 79467 1jfrA 262 1.84e-10 c.69.1.16 34724 2hu5A 582 2.05e-10 b.69.7.2,c.69.1.33 136763,136764 1imjA 210 2.30e-10 c.69.1.23 71246 1u4nA 310 2.47e-10 c.69.1.2 113021 1orvA 728 2.80e-10 b.70.3.1,c.69.1.24 87354,87355 2h7cA 542 3.78e-10 c.69.1.1 136207 2r8bA 251 4.95e-10 2hm7A 310 5.02e-10 1lzlA 323 5.70e-10 c.69.1.2 78306 1f0nA 285 6.69e-10 c.69.1.3 34636 1p0iA 529 8.95e-10 c.69.1.1 93867 1ea5A 537 9.36e-10 c.69.1.1 34592 1thgA 544 9.93e-10 c.69.1.17 34763 1c7iA 489 1.07e-09 c.69.1.1 34632 1qe3A 489 1.17e-09 c.69.1.1 34630 1cr6B 554 1.17e-09 c.69.1.11,c.108.1.2 34688,43338 1c7jA 489 1.17e-09 c.69.1.1 34631 1pv1A 299 1.24e-09 c.69.1.34 111639 2fukA 220 1.44e-09 1r88A 280 1.49e-09 c.69.1.3 97219 2hdwA 367 1.54e-09 1c4xA 285 1.71e-09 c.69.1.10 34684 1womA 271 1.84e-09 2ogtA 498 1.85e-09 1zi8A 236 1.96e-09 1u2eA 289 2.20e-09 1qtrA 317 2.53e-09 c.69.1.7 34660 1gkkA 297 2.87e-09 c.69.1.2 65248 2ocgA 254 3.32e-09 1xfdA 723 3.57e-09 b.70.3.1,c.69.1.24 115251,115252 1tqhA 247 3.67e-09 c.69.1.29 107225 2qmqA 286 3.83e-09 3bixA 574 4.00e-09 1b6g 310 4.45e-09 1aqlA 532 4.87e-09 c.69.1.1 34627 1jjiA 311 5.65e-09 c.69.1.2 66766 2pblA 262 6.04e-09 1dqzA 280 6.50e-09 c.69.1.3 34638 2b20A 403 6.59e-09 b.1.18.20,c.69.1.2 127685,127686 1wb4A 297 9.50e-09 c.69.1.2 120827 2uz0A 263 9.75e-09 1thg 544 1.00e-08 1zoiA 276 1.02e-08 1yasA 257 1.05e-08 c.69.1.20 34801 1zd3A 555 1.08e-08 c.108.1.2,c.69.1.11 124930,124931 1azwA 313 1.09e-08 c.69.1.7 34658 1b6gA 310 1.14e-08 c.69.1.8 34661 1xklA 273 1.16e-08 c.69.1.20 115410 1ede 310 1.20e-08 2bceA 585 1.21e-08 c.69.1.1 34625 3bxpA 277 1.26e-08 1broA 277 1.30e-08 c.69.1.12 34700 1dqyA 283 1.33e-08 c.69.1.3 34640 2qm0A 275 1.64e-08 1h2xA 710 1.81e-08 b.69.7.1,c.69.1.4 76598,76599 1r1dA 247 1.88e-08 c.69.1.29 96813 2o7rA 338 1.92e-08 1a88A 275 1.96e-08 c.69.1.12 34707 1j1iA 296 2.02e-08 c.69.1.10 83977 1ggvA 232 2.03e-08 c.69.1.9 34683 3c5vA 316 2.23e-08 1xqwA 293 2.24e-08 1q0rA 298 2.27e-08 c.69.1.28 95508 1din 236 2.30e-08 1va4A 279 2.45e-08 c.69.1.12 108458 1llfA 534 2.68e-08 c.69.1.17 78094 1vlqA 337 2.84e-08 c.69.1.25 108848 1ehyA 294 3.22e-08 c.69.1.11 34693 1uk8A 282 3.32e-08 c.69.1.10 107907 1cqwA 295 3.43e-08 c.69.1.8 34679 2rauA 354 3.44e-08 1bn7A 294 3.45e-08 c.69.1.8 34677 1brt 277 3.72e-08 2og1A 286 3.80e-08 1o6gA 710 4.00e-08 b.69.7.1,c.69.1.4 81087,81088 3b5eA 223 4.42e-08 2puhA 286 4.66e-08 2e3jA 356 4.71e-08 2pujA 286 4.99e-08 1hkhA 279 5.15e-08 c.69.1.12 90628 1qj4A 257 5.82e-08 c.69.1.20 34796 1a8sA 273 6.02e-08 c.69.1.12 34710 2bklA 695 6.46e-08 1jkmA 358 7.04e-08 c.69.1.2 34633 1m33A 258 7.99e-08 c.69.1.26 78514 1bn6A 294 8.14e-08 c.69.1.8 34678 2rhwA 283 9.31e-08 1ukcA 522 9.91e-08 c.69.1.17 107911 1y37A 304 1.02e-07 1a8uA 277 1.04e-07 c.69.1.12 34703 3bf7A 255 1.07e-07 3bwxA 285 1.08e-07 1cleA 534 1.21e-07 c.69.1.17 34771 1cv2A 296 1.24e-07 c.69.1.8 34680 1dx4A 586 1.28e-07 c.69.1.1 34622 1brtA 277 1.42e-07 c.69.1.12 34699 2cjpA 328 1.54e-07 1wm1A 317 1.69e-07 c.69.1.7 109405 1e8nA 710 1.78e-07 b.69.7.1,c.69.1.4 27675,34643 1yr2A 741 2.08e-07 3c8dA 403 2.33e-07 2yysA 286 2.45e-07 2bce 581 2.46e-07 2d80A 318 2.61e-07 1a8qA 274 2.67e-07 c.69.1.12 34702 1r3dA 264 2.84e-07 c.69.1.35 111680 2psdA 318 3.18e-07 1h2wA 710 3.21e-07 b.69.7.1,c.69.1.4 76596,76597 1cvlA 319 3.56e-07 c.69.1.18 34786 1iz7A 295 3.75e-07 c.69.1.8 76982 2qjwA 176 4.32e-07 1ys1X 320 5.36e-07 1ju3A 583 6.26e-07 b.18.1.13,c.69.1.21 67300,67301 2o2iA 300 6.38e-07 1tahA 318 6.50e-07 c.69.1.18 34775 2fx5A 258 7.44e-07 1mj5A 302 7.73e-07 c.69.1.8 91285 2d81A 318 9.45e-07 2qvbA 297 1.34e-06 2pl5A 366 1.86e-06 2qruA 274 2.98e-06 1cvl 319 3.28e-06 1qo7A 394 3.73e-06 c.69.1.11 34697 1vkhA 273 5.45e-06 c.69.1.32 108662 3bdvA 191 6.50e-06 1i6wA 181 7.62e-06 c.69.1.18 61859 1qfmA 710 1.17e-05 b.69.7.1,c.69.1.4 27673,34641 2gzsA 278 1.19e-05 1mpxA 615 1.20e-05 b.18.1.13,c.69.1.21 85041,85042 1ispA 181 1.45e-05 c.69.1.18 76778 1k8qA 377 2.72e-05 c.69.1.6 72177 1qlwA 328 3.68e-05 c.69.1.15 34722 2b61A 377 3.73e-05 1hlgA 371 6.35e-05 c.69.1.6 34656 2qs9A 194 6.79e-05 1mnaA 298 8.00e-05 c.69.1.22 79322 1bu8A 452 8.67e-05 b.12.1.2,c.69.1.19 23647,34795 1tcaA 317 9.25e-05 c.69.1.17 34726 1gpl 432 0.000147 1thtA 305 0.000149 c.69.1.13 34711 1ycdA 243 0.000155 2veoA 441 0.000193 1tca 317 0.000483 1lnsA 763 0.000508 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1mo2A 294 0.000600 c.69.1.22 79331 1kezA 300 0.000659 c.69.1.22 68546 1hplA 449 0.000678 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 0.005226 1pjaA 302 0.007506 c.69.1.13 94758 1uxoA 192 0.01650 c.69.1.31 108121 1tib 269 0.05647 1ivyA 452 0.06781 c.69.1.5 34654 1gt6A 269 0.07066 c.69.1.17 76342 1ei9A 279 0.1368 c.69.1.13 34713 1uswA 260 0.2136 c.69.1.17 99895 1tibA 269 0.2490 c.69.1.17 34738 1ku0A 388 0.5589 c.69.1.18 72994 2bjhA 260 0.5866 3tglA 269 0.5999 c.69.1.17 34733 2oryA 346 0.6333 1uwcA 261 0.6888 c.69.1.17 100101 1eiwA 111 0.8240 c.23.3.1 31130 1ac5 483 1.063 2dsnA 387 1.083 1whtA 256 1.094 c.69.1.5 34646 1bcsA 263 1.169 c.69.1.5 34647 2hfkA 319 1.280 2qvpA 275 1.871 2cb9A 244 1.966 1whsA 255 2.043 c.69.1.5 34649 2px6A 316 2.553 1ic6A 279 3.846 c.41.1.1 62257 1jmkC 230 4.408 c.69.1.22 71747 2b81A 323 4.515 1lgyA 269 5.104 c.69.1.17 34758 2z5gA 387 5.950 2i7cA 283 7.307 1ac5A 483 9.042 c.69.1.5 34653 1j8mF 297 9.683 a.24.13.1,c.37.1.10 62742,62743 1e8cA 498 12.84 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1drwA 273 13.06 c.2.1.3,d.81.1.3 30057,39972 2hx1A 284 13.19 1i52A 236 14.37 c.68.1.13 61767 1m41A 380 16.41 c.1.16.4 78595 2yvuA 186 16.51 1wviA 257 16.95 c.108.1.14 114915 3c6kA 381 17.64 1v2dA 381 20.53 c.67.1.1 108281 1gs5A 258 21.01 c.73.1.2 70395 2qcuA 501 26.32 2oycA 306 27.13 1z5rA 306 27.72 c.56.5.1 124488 1p9lA 245 28.08 c.2.1.3,d.81.1.3 94393,94394 3c8uA 208 28.37 1eceA 358 31.19 c.1.8.3 28813 1j3gA 187 32.07 d.118.1.1 77075 1eg5A 384 34.83 c.67.1.3 34429 2csuA 457 35.39 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2dokA 186 35.71 1cz1A 394 36.36 c.1.8.3 28839 2p8eA 307 37.13 2fywA 267 37.17 c.135.1.1 134408 1fc4A 401 37.84 c.67.1.4 59760 1owqA 361 38.50 c.1.8.5,d.26.3.1 104041,104042 1kbjA 412 38.74 c.1.4.1 72280 1ceoA 343 39.05 c.1.8.3 28808 1e20A 209 39.39 c.34.1.1 31759 2ctc 307 39.62 2d73A 738 41.22 1r59O 505 42.68 c.55.1.4,c.55.1.4 111697,111698 1v5tA 90 42.84 d.15.1.1 108385 1x9iA 302 43.93 c.80.1.1 114997 1edg 380 44.96 1f5sA 211 45.31 c.108.1.4 59656 2gpjA 252 45.63 1eqcA 394 46.12 c.1.8.3 28811 1pydA 556 46.34 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2jejA 358 46.53 d.240.1.1,e.8.1.7 138284,138285 2cftA 298 47.42 1bu6O 501 48.98 c.55.1.4,c.55.1.4 33499,33500 1ecxA 384 52.84 c.67.1.3 34431 1qnrA 344 52.97 c.1.8.3 28834 1nqkA 381 53.18 c.1.16.4 92050 1g66A 207 53.32 c.69.1.30 31329 2cm1A 260 54.68 1yb0A 159 54.89 d.118.1.1 122865 1gci 269 55.29 3c3pA 210 56.01 3b2yA 275 56.76 1qpbA 563 57.44 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1b9zA 516 57.54 b.3.1.1,c.1.8.1 22528,28798 2z20A 432 59.58 1vjrA 271 60.67 c.108.1.14 100832 2o07A 304 62.97 c.66.1.17 138862 2am1A 454 63.00 2uzhA 165 63.69 2fdrA 229 64.13 c.108.1.6 133319 2ag6A 314 64.17 3c8nA 356 64.81 1xp3A 307 64.93 c.1.15.1 122210 1to6A 371 64.95 c.141.1.1 107170 1v7pC 200 65.44 c.62.1.1 108408 1ekzA 76 65.50 d.50.1.1 38783 1jakA 512 68.32 c.1.8.6,d.92.2.1 66472,66473 2bwnA 401 69.28 c.67.1.4 129368 1d3gA 367 71.24 c.1.4.1 28600 1ozhA 566 71.37 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1mjfA 281 73.96 c.66.1.17 79198 2ay1A 394 74.62 c.67.1.1 34357 1ohvA 472 77.30 c.67.1.4 93031 1m6iA 493 77.77 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2jgdA 933 77.94 1vm6A 228 78.86 d.81.1.3,c.2.1.3 108877,118631 2cmgA 262 79.04 2hszA 243 79.85 c.108.1.6 136726 2pezA 179 79.99 1whtB 153 80.01 2qj8A 332 80.31 2cduA 452 80.77 1vjzA 341 81.13 c.1.8.3 100838 2ivfA 976 82.94 1ezwA 349 84.85 c.1.16.3 29558 1dptA 117 85.16 d.80.1.3 39862 1glaG 501 86.08 c.55.1.4,c.55.1.4 33507,33508 2qfmA 364 86.41 2bz1A 196 87.11 c.144.1.1 129532 2eo5A 419 87.16 2c4nA 250 88.25 c.108.1.14 129837 2cjgA 449 88.73