# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jjfA 268 7.94e-12 c.69.1.2 66765 1ufoA 238 8.51e-12 c.69.1.27 99344 1fj2A 232 9.21e-12 c.69.1.14 34720 2d5lA 706 2.27e-11 2i3dA 249 3.10e-11 2o2gA 223 3.20e-11 1l7aA 318 7.66e-11 c.69.1.25 77772 1auoA 218 9.21e-11 c.69.1.14 34716 2z3zA 706 1.16e-10 3bdiA 207 1.17e-10 1mtzA 293 1.53e-10 c.69.1.7 79467 1imjA 210 1.53e-10 c.69.1.23 71246 2jbwA 386 1.64e-10 2h7cA 542 1.71e-10 c.69.1.1 136207 1jfrA 262 1.81e-10 c.69.1.16 34724 1u4nA 310 2.28e-10 c.69.1.2 113021 1lzlA 323 2.29e-10 c.69.1.2 78306 2hu5A 582 2.50e-10 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 2.79e-10 b.70.3.1,c.69.1.24 87354,87355 1thgA 544 3.17e-10 c.69.1.17 34763 2hm7A 310 4.14e-10 1qe3A 489 4.56e-10 c.69.1.1 34630 1c7iA 489 4.72e-10 c.69.1.1 34632 1p0iA 529 4.93e-10 c.69.1.1 93867 2r8bA 251 5.97e-10 2fukA 220 6.47e-10 1ea5A 537 6.51e-10 c.69.1.1 34592 1pv1A 299 7.28e-10 c.69.1.34 111639 1c7jA 489 7.61e-10 c.69.1.1 34631 3bixA 574 7.93e-10 1f0nA 285 8.07e-10 c.69.1.3 34636 1zi8A 236 9.28e-10 1r88A 280 9.99e-10 c.69.1.3 97219 2ogtA 498 1.00e-09 1c4xA 285 1.09e-09 c.69.1.10 34684 2hdwA 367 1.11e-09 1u2eA 289 1.26e-09 1aqlA 532 1.70e-09 c.69.1.1 34627 1gkkA 297 2.05e-09 c.69.1.2 65248 1j1iA 296 2.18e-09 c.69.1.10 83977 1jjiA 311 2.38e-09 c.69.1.2 66766 1wb4A 297 2.48e-09 c.69.1.2 120827 1womA 271 2.59e-09 1cr6B 554 2.87e-09 c.69.1.11,c.108.1.2 34688,43338 2pblA 262 3.11e-09 3bxpA 277 3.99e-09 1thg 544 4.35e-09 1b6g 310 4.74e-09 1tqhA 247 4.86e-09 c.69.1.29 107225 1h2xA 710 5.10e-09 b.69.7.1,c.69.1.4 76598,76599 2qm0A 275 5.35e-09 2uz0A 263 5.89e-09 2bceA 585 7.33e-09 c.69.1.1 34625 1qtrA 317 7.43e-09 c.69.1.7 34660 2ocgA 254 7.47e-09 1dqyA 283 7.76e-09 c.69.1.3 34640 1a88A 275 7.84e-09 c.69.1.12 34707 1xfdA 723 8.75e-09 b.70.3.1,c.69.1.24 115251,115252 1xqwA 293 9.18e-09 1zoiA 276 9.51e-09 1llfA 534 9.92e-09 c.69.1.17 78094 1broA 277 9.98e-09 c.69.1.12 34700 2rauA 354 9.99e-09 1dqzA 280 1.02e-08 c.69.1.3 34638 1o6gA 710 1.11e-08 b.69.7.1,c.69.1.4 81087,81088 1vlqA 337 1.20e-08 c.69.1.25 108848 1uk8A 282 1.27e-08 c.69.1.10 107907 1b6gA 310 1.27e-08 c.69.1.8 34661 2o7rA 338 1.33e-08 1ede 310 1.39e-08 1din 236 1.57e-08 1zd3A 555 1.68e-08 c.108.1.2,c.69.1.11 124930,124931 1brt 277 1.68e-08 3c5vA 316 1.82e-08 1xklA 273 1.98e-08 c.69.1.20 115410 2qmqA 286 2.08e-08 2bklA 695 2.22e-08 1hkhA 279 2.26e-08 c.69.1.12 90628 1ggvA 232 2.34e-08 c.69.1.9 34683 2og1A 286 2.54e-08 1azwA 313 2.61e-08 c.69.1.7 34658 1yasA 257 2.70e-08 c.69.1.20 34801 1va4A 279 2.92e-08 c.69.1.12 108458 1r1dA 247 2.96e-08 c.69.1.29 96813 2b20A 403 3.00e-08 b.1.18.20,c.69.1.2 127685,127686 1q0rA 298 3.18e-08 c.69.1.28 95508 3b5eA 223 3.28e-08 2pujA 286 3.60e-08 1cqwA 295 4.06e-08 c.69.1.8 34679 1bn7A 294 4.65e-08 c.69.1.8 34677 1ukcA 522 4.93e-08 c.69.1.17 107911 1a8uA 277 5.74e-08 c.69.1.12 34703 1m33A 258 6.00e-08 c.69.1.26 78514 1cv2A 296 6.02e-08 c.69.1.8 34680 1e8nA 710 6.75e-08 b.69.7.1,c.69.1.4 27675,34643 2puhA 286 6.79e-08 1qj4A 257 7.05e-08 c.69.1.20 34796 2cjpA 328 7.47e-08 1yr2A 741 7.76e-08 1ehyA 294 7.93e-08 c.69.1.11 34693 1dx4A 586 8.58e-08 c.69.1.1 34622 1a8sA 273 8.64e-08 c.69.1.12 34710 1cleA 534 8.85e-08 c.69.1.17 34771 2rhwA 283 9.28e-08 1jkmA 358 9.57e-08 c.69.1.2 34633 1bn6A 294 1.01e-07 c.69.1.8 34678 2e3jA 356 1.03e-07 1brtA 277 1.03e-07 c.69.1.12 34699 1iz7A 295 1.05e-07 c.69.1.8 76982 1h2wA 710 1.07e-07 b.69.7.1,c.69.1.4 76596,76597 2qjwA 176 1.44e-07 2psdA 318 1.54e-07 2bce 581 1.58e-07 1mj5A 302 1.87e-07 c.69.1.8 91285 3bwxA 285 1.92e-07 1y37A 304 1.99e-07 1wm1A 317 2.17e-07 c.69.1.7 109405 2fx5A 258 2.52e-07 2yysA 286 3.20e-07 3c8dA 403 3.32e-07 2o2iA 300 3.33e-07 3bf7A 255 3.36e-07 1a8qA 274 3.74e-07 c.69.1.12 34702 1r3dA 264 4.06e-07 c.69.1.35 111680 1cvlA 319 5.48e-07 c.69.1.18 34786 2qvbA 297 6.05e-07 1ys1X 320 8.45e-07 2d80A 318 1.07e-06 1ju3A 583 1.42e-06 b.18.1.13,c.69.1.21 67300,67301 2pl5A 366 2.10e-06 1tahA 318 2.56e-06 c.69.1.18 34775 1qo7A 394 2.92e-06 c.69.1.11 34697 2d81A 318 3.96e-06 1i6wA 181 5.24e-06 c.69.1.18 61859 1qfmA 710 6.30e-06 b.69.7.1,c.69.1.4 27673,34641 2qruA 274 6.32e-06 2gzsA 278 6.37e-06 3bdvA 191 6.93e-06 1cvl 319 9.54e-06 1mpxA 615 1.45e-05 b.18.1.13,c.69.1.21 85041,85042 1ispA 181 1.46e-05 c.69.1.18 76778 1lnsA 763 3.16e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1vkhA 273 3.21e-05 c.69.1.32 108662 1k8qA 377 3.93e-05 c.69.1.6 72177 2b61A 377 4.46e-05 1qlwA 328 4.82e-05 c.69.1.15 34722 1hlgA 371 6.66e-05 c.69.1.6 34656 2qs9A 194 6.73e-05 1mnaA 298 9.04e-05 c.69.1.22 79322 1thtA 305 0.000110 c.69.1.13 34711 2veoA 441 0.000111 1ycdA 243 0.000145 1mo2A 294 0.000159 c.69.1.22 79331 1tcaA 317 0.000183 c.69.1.17 34726 1bu8A 452 0.000264 b.12.1.2,c.69.1.19 23647,34795 1gpl 432 0.000428 1tca 317 0.000913 1kezA 300 0.001359 c.69.1.22 68546 1uxoA 192 0.003432 c.69.1.31 108121 1hplA 449 0.004002 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 0.004525 1pjaA 302 0.008082 c.69.1.13 94758 1tib 269 0.1138 1ivyA 452 0.1201 c.69.1.5 34654 1whtA 256 0.2292 c.69.1.5 34646 1bcsA 263 0.3227 c.69.1.5 34647 1whsA 255 0.3282 c.69.1.5 34649 1eiwA 111 0.3578 c.23.3.1 31130 1gt6A 269 0.3588 c.69.1.17 76342 2hfkA 319 0.4648 1uswA 260 0.4757 c.69.1.17 99895 1tibA 269 0.7116 c.69.1.17 34738 3tglA 269 0.8853 c.69.1.17 34733 1uwcA 261 0.9617 c.69.1.17 100101 1ei9A 279 0.9703 c.69.1.13 34713 1ac5A 483 1.119 c.69.1.5 34653 1ku0A 388 1.247 c.69.1.18 72994 1j8mF 297 1.379 a.24.13.1,c.37.1.10 62742,62743 1ac5 483 1.586 2oryA 346 1.670 1ic6A 279 1.814 c.41.1.1 62257 2dsnA 387 2.303 2bjhA 260 2.407 2cb9A 244 2.526 1lgyA 269 2.631 c.69.1.17 34758 2qvpA 275 3.142 1i52A 236 3.376 c.68.1.13 61767 2z5gA 387 9.599 1jmkC 230 9.707 c.69.1.22 71747 1j3gA 187 10.53 d.118.1.1 77075 1o2dA 371 10.93 e.22.1.2 86591 3ckkA 235 11.94 1ceoA 343 14.32 c.1.8.3 28808 2g1pA 278 16.28 2b81A 323 17.58 2pgnA 589 19.63 2i7cA 283 22.21 1rz3A 201 23.23 c.37.1.6 98132 2d73A 738 23.35 2yvuA 186 24.69 2px6A 316 25.61 2q7xA 326 27.07 3c8uA 208 27.14 1x05A 129 27.21 b.55.1.1 121543 2dpmA 284 31.81 c.66.1.28 34246 1bu6O 501 33.62 c.55.1.4,c.55.1.4 33499,33500 1dptA 117 33.73 d.80.1.3 39862 2jejA 358 35.32 d.240.1.1,e.8.1.7 138284,138285 1e8cA 498 35.33 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1ekzA 76 35.47 d.50.1.1 38783 1gs5A 258 35.49 c.73.1.2 70395 3cdxA 354 35.88 3c6kA 381 36.19 1drwA 273 37.13 c.2.1.3,d.81.1.3 30057,39972 1uirA 314 37.42 c.66.1.17 99429 1v2dA 381 37.91 c.67.1.1 108281 1qpbA 563 38.55 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1bunB 61 38.66 g.8.1.1 44552 1d3gA 367 42.41 c.1.4.1 28600 1kbjA 412 44.01 c.1.4.1 72280 1p9lA 245 44.34 c.2.1.3,d.81.1.3 94393,94394 1ne7A 289 45.00 c.124.1.1 91833 1lehA 364 46.43 c.2.1.7,c.58.1.1 30268,33916 1cz1A 394 46.99 c.1.8.3 28839 2fcrA 173 47.23 c.23.5.1 31151 2o07A 304 48.83 c.66.1.17 138862 1ezwA 349 50.19 c.1.16.3 29558 1e20A 209 50.63 c.34.1.1 31759 1pydA 556 51.25 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2qm8A 337 51.50 1jakA 512 54.71 c.1.8.6,d.92.2.1 66472,66473 1f5sA 211 54.94 c.108.1.4 59656 1qnrA 344 56.95 c.1.8.3 28834 1eqcA 394 58.00 c.1.8.3 28811 1sq5A 308 58.60 c.37.1.6 105882 2am1A 454 58.96 1t9bA 677 59.56 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1m41A 380 60.40 c.1.16.4 78595 2vhhA 405 61.12 2p6pA 384 62.62 1gci 269 64.25 1x9iA 302 64.54 c.80.1.1 114997 1wviA 257 64.63 c.108.1.14 114915 1eceA 358 64.70 c.1.8.3 28813 2ez9A 603 64.96 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1xx0A 127 65.32 b.55.1.1 122412 1fs5A 266 66.09 c.124.1.1 65044 1dg9A 157 67.25 c.44.1.1 32637 2csuA 457 67.65 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2p5tB 253 67.74 1ag9A 175 67.85 c.23.5.1 31178 2b8nA 429 68.12 c.118.1.1 128093 2ax4A 198 68.36 1eg5A 384 68.53 c.67.1.3 34429 2qt1A 207 70.03 2q62A 247 72.21 1hzdA 272 72.22 c.14.1.3 65969 1vecA 206 73.33 c.37.1.19 100575 2o6lA 170 74.48 1ceo 343 74.55 1yt8A 539 77.22 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1to6A 371 77.28 c.141.1.1 107170 1yixA 265 77.48 c.1.9.12 123371 1owqA 361 78.13 c.1.8.5,d.26.3.1 104041,104042 1db3A 372 78.28 c.2.1.2 29813 1nni1 174 79.19 1h0hA 977 79.20 b.52.2.2,c.81.1.1 76435,76436 1qw9A 502 79.49 b.71.1.2,c.1.8.3 96466,96467 1e32A 458 79.60 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1z0nA 96 81.55 1zr0B 63 81.95 1poxA 585 82.11 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1bqg 451 83.09 1vjzA 341 83.96 c.1.8.3 100838 2bkxA 242 84.95 1l7mA 211 87.30 c.108.1.4 73664 2pezA 179 88.53 1hl9A 449 88.72 b.71.1.3,c.1.8.11 90650,90651 2fywA 267 88.80 c.135.1.1 134408