# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1fj2A 232 3.46e-12 c.69.1.14 34720 1ufoA 238 3.49e-12 c.69.1.27 99344 1jjfA 268 3.69e-12 c.69.1.2 66765 2o2gA 223 5.21e-12 2i3dA 249 5.61e-12 1l7aA 318 1.01e-11 c.69.1.25 77772 2d5lA 706 1.84e-11 3bdiA 207 2.21e-11 1imjA 210 2.41e-11 c.69.1.23 71246 2jbwA 386 2.45e-11 1auoA 218 2.79e-11 c.69.1.14 34716 1jfrA 262 3.21e-11 c.69.1.16 34724 1mtzA 293 5.21e-11 c.69.1.7 79467 2hu5A 582 5.24e-11 b.69.7.2,c.69.1.33 136763,136764 1lzlA 323 5.25e-11 c.69.1.2 78306 2hm7A 310 5.25e-11 1thgA 544 6.62e-11 c.69.1.17 34763 2h7cA 542 6.65e-11 c.69.1.1 136207 1u4nA 310 7.50e-11 c.69.1.2 113021 1orvA 728 9.86e-11 b.70.3.1,c.69.1.24 87354,87355 2z3zA 706 1.07e-10 1p0iA 529 1.44e-10 c.69.1.1 93867 1f0nA 285 2.11e-10 c.69.1.3 34636 1qe3A 489 2.16e-10 c.69.1.1 34630 1r88A 280 2.28e-10 c.69.1.3 97219 2r8bA 251 2.28e-10 1c7iA 489 2.35e-10 c.69.1.1 34632 1pv1A 299 2.54e-10 c.69.1.34 111639 2fukA 220 2.56e-10 1u2eA 289 3.15e-10 3bixA 574 3.25e-10 1c7jA 489 3.96e-10 c.69.1.1 34631 1c4xA 285 3.96e-10 c.69.1.10 34684 1zi8A 236 4.13e-10 1womA 271 4.19e-10 1jjiA 311 4.40e-10 c.69.1.2 66766 2hdwA 367 4.44e-10 1ea5A 537 4.58e-10 c.69.1.1 34592 1j1iA 296 6.37e-10 c.69.1.10 83977 2ogtA 498 6.44e-10 1b6g 310 7.31e-10 1cr6B 554 8.21e-10 c.69.1.11,c.108.1.2 34688,43338 1gkkA 297 8.32e-10 c.69.1.2 65248 1thg 544 1.02e-09 1wb4A 297 1.06e-09 c.69.1.2 120827 1aqlA 532 1.24e-09 c.69.1.1 34627 2pblA 262 1.68e-09 2qm0A 275 1.69e-09 2ocgA 254 1.78e-09 3bxpA 277 1.79e-09 1b6gA 310 1.98e-09 c.69.1.8 34661 1ede 310 2.08e-09 1zoiA 276 2.10e-09 1tqhA 247 2.16e-09 c.69.1.29 107225 1xfdA 723 2.50e-09 b.70.3.1,c.69.1.24 115251,115252 1a88A 275 2.58e-09 c.69.1.12 34707 1dqyA 283 2.68e-09 c.69.1.3 34640 2bceA 585 2.81e-09 c.69.1.1 34625 2uz0A 263 2.86e-09 1vlqA 337 2.97e-09 c.69.1.25 108848 1dqzA 280 3.00e-09 c.69.1.3 34638 1din 236 3.23e-09 1llfA 534 3.64e-09 c.69.1.17 78094 1broA 277 3.95e-09 c.69.1.12 34700 2qmqA 286 4.42e-09 1brt 277 4.53e-09 1uk8A 282 4.66e-09 c.69.1.10 107907 1qtrA 317 4.97e-09 c.69.1.7 34660 1xqwA 293 5.00e-09 1xklA 273 5.95e-09 c.69.1.20 115410 2o7rA 338 6.21e-09 1va4A 279 7.24e-09 c.69.1.12 108458 1h2xA 710 7.55e-09 b.69.7.1,c.69.1.4 76598,76599 1zd3A 555 7.67e-09 c.108.1.2,c.69.1.11 124930,124931 1ggvA 232 7.67e-09 c.69.1.9 34683 2b20A 403 7.68e-09 b.1.18.20,c.69.1.2 127685,127686 1r1dA 247 8.57e-09 c.69.1.29 96813 1o6gA 710 9.04e-09 b.69.7.1,c.69.1.4 81087,81088 2og1A 286 9.43e-09 2rauA 354 9.53e-09 3c5vA 316 1.15e-08 2pujA 286 1.16e-08 1hkhA 279 1.19e-08 c.69.1.12 90628 1yasA 257 1.30e-08 c.69.1.20 34801 3b5eA 223 1.46e-08 1q0rA 298 1.55e-08 c.69.1.28 95508 2bklA 695 1.73e-08 1cqwA 295 1.75e-08 c.69.1.8 34679 1bn7A 294 1.87e-08 c.69.1.8 34677 1azwA 313 1.96e-08 c.69.1.7 34658 2puhA 286 2.15e-08 1a8uA 277 2.67e-08 c.69.1.12 34703 1a8sA 273 2.79e-08 c.69.1.12 34710 2rhwA 283 3.32e-08 1ehyA 294 3.39e-08 c.69.1.11 34693 1brtA 277 3.43e-08 c.69.1.12 34699 1jkmA 358 3.51e-08 c.69.1.2 34633 1ukcA 522 3.70e-08 c.69.1.17 107911 1cv2A 296 3.92e-08 c.69.1.8 34680 1bn6A 294 4.39e-08 c.69.1.8 34678 1dx4A 586 4.76e-08 c.69.1.1 34622 1cleA 534 4.94e-08 c.69.1.17 34771 2cjpA 328 5.17e-08 1qj4A 257 5.31e-08 c.69.1.20 34796 2e3jA 356 5.55e-08 1m33A 258 5.55e-08 c.69.1.26 78514 3bwxA 285 6.95e-08 2qjwA 176 7.06e-08 2psdA 318 7.64e-08 1iz7A 295 7.85e-08 c.69.1.8 76982 1yr2A 741 8.09e-08 1y37A 304 1.06e-07 3c8dA 403 1.10e-07 2bce 581 1.15e-07 1a8qA 274 1.18e-07 c.69.1.12 34702 1mj5A 302 1.36e-07 c.69.1.8 91285 1e8nA 710 1.40e-07 b.69.7.1,c.69.1.4 27675,34643 1r3dA 264 1.47e-07 c.69.1.35 111680 3bf7A 255 1.69e-07 2yysA 286 1.87e-07 1h2wA 710 1.98e-07 b.69.7.1,c.69.1.4 76596,76597 2fx5A 258 2.14e-07 2o2iA 300 2.15e-07 1wm1A 317 2.46e-07 c.69.1.7 109405 1cvlA 319 3.29e-07 c.69.1.18 34786 2d80A 318 4.06e-07 2qvbA 297 4.20e-07 1ys1X 320 6.31e-07 1ju3A 583 1.01e-06 b.18.1.13,c.69.1.21 67300,67301 2d81A 318 1.27e-06 1tahA 318 1.37e-06 c.69.1.18 34775 1qo7A 394 1.38e-06 c.69.1.11 34697 1i6wA 181 3.10e-06 c.69.1.18 61859 3bdvA 191 3.81e-06 2gzsA 278 4.05e-06 2qruA 274 6.49e-06 1cvl 319 6.53e-06 1lnsA 763 7.51e-06 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ispA 181 8.00e-06 c.69.1.18 76778 1qfmA 710 8.24e-06 b.69.7.1,c.69.1.4 27673,34641 1mpxA 615 8.56e-06 b.18.1.13,c.69.1.21 85041,85042 2pl5A 366 9.04e-06 1vkhA 273 2.42e-05 c.69.1.32 108662 1k8qA 377 2.95e-05 c.69.1.6 72177 1qlwA 328 3.51e-05 c.69.1.15 34722 2qs9A 194 4.05e-05 1thtA 305 4.44e-05 c.69.1.13 34711 1hlgA 371 7.64e-05 c.69.1.6 34656 1mnaA 298 8.24e-05 c.69.1.22 79322 2b61A 377 0.000148 1ycdA 243 0.000165 2veoA 441 0.000198 1bu8A 452 0.000209 b.12.1.2,c.69.1.19 23647,34795 1tcaA 317 0.000228 c.69.1.17 34726 1gpl 432 0.000300 1mo2A 294 0.000391 c.69.1.22 79331 1kezA 300 0.001062 c.69.1.22 68546 1hplA 449 0.001941 b.12.1.2,c.69.1.19 23639,34787 1tca 317 0.001967 1uxoA 192 0.005351 c.69.1.31 108121 1pjaA 302 0.005390 c.69.1.13 94758 2q0xA 335 0.009583 1tib 269 0.1045 1ivyA 452 0.2073 c.69.1.5 34654 1eiwA 111 0.2297 c.23.3.1 31130 1bcsA 263 0.2371 c.69.1.5 34647 1whtA 256 0.2398 c.69.1.5 34646 1whsA 255 0.2790 c.69.1.5 34649 1gt6A 269 0.3157 c.69.1.17 76342 1uswA 260 0.4220 c.69.1.17 99895 2hfkA 319 0.4906 3tglA 269 0.6520 c.69.1.17 34733 1tibA 269 0.6845 c.69.1.17 34738 1uwcA 261 0.6936 c.69.1.17 100101 2oryA 346 0.8597 2bjhA 260 0.9580 1i52A 236 1.118 c.68.1.13 61767 1ku0A 388 1.230 c.69.1.18 72994 1ei9A 279 1.230 c.69.1.13 34713 1lgyA 269 1.381 c.69.1.17 34758 1j8mF 297 1.512 a.24.13.1,c.37.1.10 62742,62743 2cb9A 244 2.825 2dsnA 387 3.475 1ac5 483 4.358 1ic6A 279 4.999 c.41.1.1 62257 2qvpA 275 5.481 1o2dA 371 6.096 e.22.1.2 86591 2b81A 323 6.723 1ac5A 483 8.899 c.69.1.5 34653 1rz3A 201 10.53 c.37.1.6 98132 1e8cA 498 10.67 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1jmkC 230 11.07 c.69.1.22 71747 2z5gA 387 11.94 2g1pA 278 13.06 2i7cA 283 14.37 1ceoA 343 14.98 c.1.8.3 28808 1uirA 314 17.05 c.66.1.17 99429 1bunB 61 18.32 g.8.1.1 44552 1j3gA 187 18.89 d.118.1.1 77075 2o07A 304 18.92 c.66.1.17 138862 1bqg 451 19.77 2fywA 267 22.23 c.135.1.1 134408 1drwA 273 23.24 c.2.1.3,d.81.1.3 30057,39972 1m7gA 211 24.62 c.37.1.4 78724 1qpbA 563 25.21 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1qnrA 344 26.89 c.1.8.3 28834 2csuA 457 28.26 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1dptA 117 28.40 d.80.1.3 39862 1pydA 556 28.79 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 3c8uA 208 28.95 1ne7A 289 31.88 c.124.1.1 91833 1g6xA 58 32.75 g.8.1.1 60320 2q7xA 326 33.39 1aalA 58 34.18 g.8.1.1 44472 1x05A 129 35.98 b.55.1.1 121543 2yvuA 186 37.45 2dokA 186 37.70 1zr0B 63 37.74 2jejA 358 37.95 d.240.1.1,e.8.1.7 138284,138285 2fcrA 173 39.02 c.23.5.1 31151 1bu6O 501 39.17 c.55.1.4,c.55.1.4 33499,33500 2d73A 738 39.81 2p5tB 253 42.25 1wviA 257 42.44 c.108.1.14 114915 1kthA 58 42.53 g.8.1.1 68863 1gs5A 258 44.18 c.73.1.2 70395 1eg5A 384 44.27 c.67.1.3 34429 1aoxA 203 45.58 c.62.1.1 34151 1m41A 380 46.75 c.1.16.4 78595 3ckkA 235 49.00 1z5rA 306 50.53 c.56.5.1 124488 1aapA 58 51.80 g.8.1.1 44543 2fi3I 58 53.83 1fs5A 266 54.05 c.124.1.1 65044 3c6kA 381 54.62 2qt1A 207 54.84 1eudA 311 56.02 c.2.1.8,c.23.4.1 30312,31140 1p9lA 245 56.66 c.2.1.3,d.81.1.3 94393,94394 1vjzA 341 57.28 c.1.8.3 100838 1ekzA 76 60.02 d.50.1.1 38783 1v2dA 381 60.54 c.67.1.1 108281 1vjrA 271 60.82 c.108.1.14 100832 2bkxA 242 61.52 1bcsB 160 61.80 2bz1A 196 62.24 c.144.1.1 129532 2ivfA 976 62.85 1d6jA 211 64.56 c.37.1.4 31940 1gx1A 160 65.55 d.79.5.1 70675 2pgnA 589 65.93 1whtB 153 65.96 1jidA 128 67.33 d.201.1.1 66735 1ezwA 349 68.24 c.1.16.3 29558 1owqA 361 68.27 c.1.8.5,d.26.3.1 104041,104042 2f9iB 285 68.70 1f5sA 211 69.80 c.108.1.4 59656 2h5eA 529 70.57 1whsB 153 71.01 1sq5A 308 72.41 c.37.1.6 105882 1ecxA 384 72.43 c.67.1.3 34431 1hl9A 449 72.68 b.71.1.3,c.1.8.11 90650,90651 1db3A 372 72.95 c.2.1.2 29813 1ag9A 175 73.52 c.23.5.1 31178 1eceA 358 76.74 c.1.8.3 28813 2ez9A 603 78.50 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2ivnA 330 79.57 2q62A 247 79.81 2ax4A 198 80.09 1v5tA 90 80.64 d.15.1.1 108385 2gn0A 342 80.84 2px6A 316 81.37 2c4nA 250 82.44 c.108.1.14 129837 1lehA 364 82.63 c.2.1.7,c.58.1.1 30268,33916 2o6lA 170 82.74 2am1A 454 83.08 1jakA 512 84.97 c.1.8.6,d.92.2.1 66472,66473 1qw9A 502 86.92 b.71.1.2,c.1.8.3 96466,96467 1to6A 371 86.99 c.141.1.1 107170 1gci 269 88.77 1ceo 343 88.81