# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 3.87e-12 c.69.1.27 99344 1jjfA 268 7.02e-12 c.69.1.2 66765 1fj2A 232 9.99e-12 c.69.1.14 34720 2o2gA 223 1.33e-11 2i3dA 249 1.65e-11 2d5lA 706 2.25e-11 1auoA 218 4.54e-11 c.69.1.14 34716 1l7aA 318 5.04e-11 c.69.1.25 77772 1imjA 210 5.50e-11 c.69.1.23 71246 3bdiA 207 7.22e-11 1jfrA 262 7.82e-11 c.69.1.16 34724 1mtzA 293 7.93e-11 c.69.1.7 79467 1lzlA 323 7.97e-11 c.69.1.2 78306 2jbwA 386 9.56e-11 2z3zA 706 1.08e-10 2hu5A 582 1.08e-10 b.69.7.2,c.69.1.33 136763,136764 1thgA 544 1.28e-10 c.69.1.17 34763 2hm7A 310 1.39e-10 1u4nA 310 1.40e-10 c.69.1.2 113021 2h7cA 542 1.50e-10 c.69.1.1 136207 1orvA 728 2.53e-10 b.70.3.1,c.69.1.24 87354,87355 1p0iA 529 3.12e-10 c.69.1.1 93867 2fukA 220 3.87e-10 1c7iA 489 4.43e-10 c.69.1.1 34632 1r88A 280 4.54e-10 c.69.1.3 97219 1qe3A 489 4.75e-10 c.69.1.1 34630 1c4xA 285 5.52e-10 c.69.1.10 34684 1f0nA 285 5.57e-10 c.69.1.3 34636 1u2eA 289 5.57e-10 1pv1A 299 5.90e-10 c.69.1.34 111639 2r8bA 251 6.32e-10 2ogtA 498 7.23e-10 2hdwA 367 7.64e-10 3bixA 574 7.76e-10 1c7jA 489 8.12e-10 c.69.1.1 34631 1gkkA 297 8.70e-10 c.69.1.2 65248 1ea5A 537 9.29e-10 c.69.1.1 34592 1j1iA 296 9.61e-10 c.69.1.10 83977 1womA 271 9.76e-10 1zi8A 236 1.12e-09 1wb4A 297 1.23e-09 c.69.1.2 120827 1cr6B 554 1.23e-09 c.69.1.11,c.108.1.2 34688,43338 1jjiA 311 1.27e-09 c.69.1.2 66766 3bxpA 277 1.45e-09 1aqlA 532 2.01e-09 c.69.1.1 34627 1b6g 310 2.07e-09 1thg 544 2.21e-09 1h2xA 710 2.43e-09 b.69.7.1,c.69.1.4 76598,76599 2ocgA 254 3.07e-09 1tqhA 247 3.75e-09 c.69.1.29 107225 1a88A 275 4.33e-09 c.69.1.12 34707 2qm0A 275 4.46e-09 1broA 277 4.52e-09 c.69.1.12 34700 2pblA 262 4.69e-09 2uz0A 263 5.22e-09 1o6gA 710 5.25e-09 b.69.7.1,c.69.1.4 81087,81088 1qtrA 317 5.52e-09 c.69.1.7 34660 2bceA 585 5.88e-09 c.69.1.1 34625 1vlqA 337 6.73e-09 c.69.1.25 108848 1llfA 534 7.02e-09 c.69.1.17 78094 1ede 310 7.08e-09 1xfdA 723 7.18e-09 b.70.3.1,c.69.1.24 115251,115252 1xqwA 293 7.29e-09 1b6gA 310 7.32e-09 c.69.1.8 34661 1dqyA 283 7.46e-09 c.69.1.3 34640 2rauA 354 7.52e-09 1brt 277 7.59e-09 1dqzA 280 8.19e-09 c.69.1.3 34638 2o7rA 338 9.07e-09 1va4A 279 9.69e-09 c.69.1.12 108458 3c5vA 316 9.82e-09 1zoiA 276 9.93e-09 1zd3A 555 1.07e-08 c.108.1.2,c.69.1.11 124930,124931 1din 236 1.09e-08 1azwA 313 1.16e-08 c.69.1.7 34658 2qmqA 286 1.20e-08 1uk8A 282 1.20e-08 c.69.1.10 107907 1xklA 273 1.23e-08 c.69.1.20 115410 1yasA 257 1.24e-08 c.69.1.20 34801 2b20A 403 1.50e-08 b.1.18.20,c.69.1.2 127685,127686 1hkhA 279 1.83e-08 c.69.1.12 90628 1r1dA 247 1.84e-08 c.69.1.29 96813 2og1A 286 1.88e-08 1ggvA 232 1.92e-08 c.69.1.9 34683 2bklA 695 1.93e-08 3b5eA 223 2.05e-08 2pujA 286 2.11e-08 1cqwA 295 2.22e-08 c.69.1.8 34679 1bn7A 294 2.26e-08 c.69.1.8 34677 1q0rA 298 2.84e-08 c.69.1.28 95508 1m33A 258 3.18e-08 c.69.1.26 78514 1e8nA 710 3.51e-08 b.69.7.1,c.69.1.4 27675,34643 1a8uA 277 3.56e-08 c.69.1.12 34703 1jkmA 358 3.82e-08 c.69.1.2 34633 2puhA 286 4.00e-08 1qj4A 257 4.75e-08 c.69.1.20 34796 1ukcA 522 5.04e-08 c.69.1.17 107911 1bn6A 294 5.16e-08 c.69.1.8 34678 1a8sA 273 5.32e-08 c.69.1.12 34710 1brtA 277 5.85e-08 c.69.1.12 34699 1ehyA 294 5.86e-08 c.69.1.11 34693 1cv2A 296 6.34e-08 c.69.1.8 34680 2rhwA 283 6.77e-08 1h2wA 710 6.77e-08 b.69.7.1,c.69.1.4 76596,76597 1dx4A 586 6.88e-08 c.69.1.1 34622 2e3jA 356 8.35e-08 1cleA 534 9.82e-08 c.69.1.17 34771 1yr2A 741 1.03e-07 2qjwA 176 1.16e-07 2cjpA 328 1.28e-07 2psdA 318 1.34e-07 1iz7A 295 1.47e-07 c.69.1.8 76982 1r3dA 264 1.60e-07 c.69.1.35 111680 3bwxA 285 1.65e-07 2bce 581 1.66e-07 3c8dA 403 1.86e-07 1a8qA 274 1.87e-07 c.69.1.12 34702 1wm1A 317 1.90e-07 c.69.1.7 109405 1y37A 304 2.13e-07 3bf7A 255 2.42e-07 1mj5A 302 2.45e-07 c.69.1.8 91285 2yysA 286 3.42e-07 2fx5A 258 3.91e-07 2o2iA 300 4.92e-07 1cvlA 319 7.01e-07 c.69.1.18 34786 1ys1X 320 8.15e-07 2qvbA 297 9.94e-07 2d80A 318 1.06e-06 1ju3A 583 1.26e-06 b.18.1.13,c.69.1.21 67300,67301 1qo7A 394 2.59e-06 c.69.1.11 34697 1tahA 318 2.68e-06 c.69.1.18 34775 2d81A 318 2.75e-06 2qruA 274 3.30e-06 3bdvA 191 3.36e-06 1qfmA 710 3.49e-06 b.69.7.1,c.69.1.4 27673,34641 2pl5A 366 4.71e-06 1i6wA 181 5.47e-06 c.69.1.18 61859 2gzsA 278 5.76e-06 1lnsA 763 1.02e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1cvl 319 1.40e-05 1mpxA 615 1.62e-05 b.18.1.13,c.69.1.21 85041,85042 1ispA 181 1.69e-05 c.69.1.18 76778 1k8qA 377 2.60e-05 c.69.1.6 72177 1vkhA 273 2.87e-05 c.69.1.32 108662 1hlgA 371 4.55e-05 c.69.1.6 34656 1qlwA 328 5.69e-05 c.69.1.15 34722 1mnaA 298 6.12e-05 c.69.1.22 79322 2qs9A 194 6.59e-05 1thtA 305 8.33e-05 c.69.1.13 34711 2b61A 377 9.10e-05 1ycdA 243 9.30e-05 1mo2A 294 0.000136 c.69.1.22 79331 1bu8A 452 0.000160 b.12.1.2,c.69.1.19 23647,34795 2veoA 441 0.000163 1gpl 432 0.000285 1tcaA 317 0.000385 c.69.1.17 34726 1kezA 300 0.000467 c.69.1.22 68546 1hplA 449 0.001745 b.12.1.2,c.69.1.19 23639,34787 1tca 317 0.002395 1uxoA 192 0.008648 c.69.1.31 108121 2q0xA 335 0.009037 1pjaA 302 0.01386 c.69.1.13 94758 1tib 269 0.06921 1ivyA 452 0.1228 c.69.1.5 34654 1whtA 256 0.1370 c.69.1.5 34646 1bcsA 263 0.1766 c.69.1.5 34647 1whsA 255 0.2166 c.69.1.5 34649 1gt6A 269 0.2850 c.69.1.17 76342 1eiwA 111 0.3484 c.23.3.1 31130 1tibA 269 0.4197 c.69.1.17 34738 1uswA 260 0.5293 c.69.1.17 99895 2hfkA 319 0.6491 3tglA 269 0.6954 c.69.1.17 34733 1uwcA 261 0.7356 c.69.1.17 100101 2bjhA 260 0.9377 1ei9A 279 1.141 c.69.1.13 34713 2oryA 346 1.479 1j8mF 297 1.639 a.24.13.1,c.37.1.10 62742,62743 2cb9A 244 1.862 1ku0A 388 1.863 c.69.1.18 72994 1ac5 483 2.115 1lgyA 269 2.809 c.69.1.17 34758 1ac5A 483 4.375 c.69.1.5 34653 2qvpA 275 5.633 1o2dA 371 5.700 e.22.1.2 86591 1ic6A 279 5.779 c.41.1.1 62257 2dsnA 387 6.022 1i52A 236 6.342 c.68.1.13 61767 2q7xA 326 9.860 1rz3A 201 14.35 c.37.1.6 98132 2b81A 323 15.84 1jmkC 230 15.96 c.69.1.22 71747 1e8cA 498 17.74 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2z5gA 387 18.04 1owqA 361 18.58 c.1.8.5,d.26.3.1 104041,104042 1ceoA 343 19.93 c.1.8.3 28808 1drwA 273 21.14 c.2.1.3,d.81.1.3 30057,39972 1bunB 61 21.30 g.8.1.1 44552 1m7gA 211 21.51 c.37.1.4 78724 2yvuA 186 21.70 2fywA 267 22.26 c.135.1.1 134408 2g1pA 278 26.50 3c8uA 208 27.48 2jejA 358 28.22 d.240.1.1,e.8.1.7 138284,138285 2csuA 457 30.09 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2i7cA 283 31.34 3c6kA 381 33.01 1j3gA 187 35.51 d.118.1.1 77075 1qnrA 344 36.98 c.1.8.3 28834 2bz1A 196 38.22 c.144.1.1 129532 1zr0B 63 38.26 1bu6O 501 38.72 c.55.1.4,c.55.1.4 33499,33500 2d73A 738 38.95 1uirA 314 39.14 c.66.1.17 99429 2pgnA 589 39.63 1p9lA 245 41.77 c.2.1.3,d.81.1.3 94393,94394 2px6A 316 42.39 1kthA 58 46.22 g.8.1.1 68863 2qt1A 207 46.54 1d6jA 211 46.68 c.37.1.4 31940 1e32A 458 48.17 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1m1sA 116 48.65 b.1.11.2 84747 1ne7A 289 48.95 c.124.1.1 91833 2ivfA 976 49.37 3ckkA 235 49.76 1db3A 372 50.56 c.2.1.2 29813 1bqg 451 51.35 1lehA 364 52.39 c.2.1.7,c.58.1.1 30268,33916 2ax4A 198 53.23 1z5rA 306 53.66 c.56.5.1 124488 1dptA 117 54.73 d.80.1.3 39862 2dokA 186 55.21 1aalA 58 57.25 g.8.1.1 44472 1gs5A 258 57.41 c.73.1.2 70395 1g6xA 58 57.62 g.8.1.1 60320 2f9iB 285 58.23 1z0nA 96 60.03 1ezwA 349 63.60 c.1.16.3 29558 1to6A 371 65.11 c.141.1.1 107170 1eg5A 384 65.29 c.67.1.3 34429 2djiA 590 66.03 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1t9bA 677 68.46 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1fs5A 266 68.65 c.124.1.1 65044 2o07A 304 68.81 c.66.1.17 138862 1x05A 129 72.60 b.55.1.1 121543 2hx1A 284 73.23 2gn0A 342 74.75 1jakA 512 76.75 c.1.8.6,d.92.2.1 66472,66473 1m41A 380 77.13 c.1.16.4 78595 2ctc 307 77.60 1wviA 257 78.11 c.108.1.14 114915 1h0hA 977 78.62 b.52.2.2,c.81.1.1 76435,76436 1hl9A 449 79.04 b.71.1.3,c.1.8.11 90650,90651 2p5tB 253 79.76 1eceA 358 80.07 c.1.8.3 28813 1c7sA 858 80.97 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1xx0A 127 81.33 b.55.1.1 122412 1j7xA 302 81.72 c.14.1.2 66425 1obrA 326 81.88 c.56.5.2 33828 1qw9A 502 82.28 b.71.1.2,c.1.8.3 96466,96467 2fi3I 58 83.72 1sh7A 284 84.03 1d3gA 367 85.34 c.1.4.1 28600 1ag9A 175 86.83 c.23.5.1 31178 1jidA 128 88.75 d.201.1.1 66735 1aapA 58 88.83 g.8.1.1 44543 1x9iA 302 88.93 c.80.1.1 114997 2ez9A 603 89.32 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629