# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jjfA 268 2.10e-09 c.69.1.2 66765 2i3dA 249 5.02e-09 1fj2A 232 5.39e-09 c.69.1.14 34720 2d5lA 706 6.93e-09 1ufoA 238 8.03e-09 c.69.1.27 99344 1auoA 218 1.02e-08 c.69.1.14 34716 2o2gA 223 1.05e-08 2jbwA 386 1.14e-08 1jfrA 262 1.58e-08 c.69.1.16 34724 1l7aA 318 2.00e-08 c.69.1.25 77772 1imjA 210 2.50e-08 c.69.1.23 71246 2z3zA 706 3.24e-08 3bdiA 207 3.34e-08 1wb4A 297 4.33e-08 c.69.1.2 120827 1orvA 728 4.61e-08 b.70.3.1,c.69.1.24 87354,87355 1gkkA 297 4.72e-08 c.69.1.2 65248 2hu5A 582 4.75e-08 b.69.7.2,c.69.1.33 136763,136764 1lzlA 323 4.86e-08 c.69.1.2 78306 1u4nA 310 4.86e-08 c.69.1.2 113021 1r88A 280 4.94e-08 c.69.1.3 97219 2hm7A 310 7.91e-08 1mtzA 293 8.32e-08 c.69.1.7 79467 1zi8A 236 9.23e-08 2fukA 220 1.18e-07 2pblA 262 1.40e-07 2r8bA 251 1.40e-07 1pv1A 299 1.75e-07 c.69.1.34 111639 1qe3A 489 1.80e-07 c.69.1.1 34630 1f0nA 285 1.84e-07 c.69.1.3 34636 1c4xA 285 2.05e-07 c.69.1.10 34684 2hdwA 367 2.34e-07 1jjiA 311 2.34e-07 c.69.1.2 66766 1p0iA 529 2.43e-07 c.69.1.1 93867 1ea5A 537 2.92e-07 c.69.1.1 34592 1b6g 310 3.14e-07 1qtrA 317 3.48e-07 c.69.1.7 34660 1h2xA 710 3.90e-07 b.69.7.1,c.69.1.4 76598,76599 1c7iA 489 4.40e-07 c.69.1.1 34632 2ocgA 254 4.52e-07 3bixA 574 4.59e-07 1u2eA 289 4.83e-07 2h7cA 542 5.02e-07 c.69.1.1 136207 1ggvA 232 5.09e-07 c.69.1.9 34683 1thgA 544 5.27e-07 c.69.1.17 34763 2ogtA 498 5.64e-07 1o6gA 710 6.29e-07 b.69.7.1,c.69.1.4 81087,81088 1b6gA 310 6.57e-07 c.69.1.8 34661 1dqzA 280 6.71e-07 c.69.1.3 34638 1c7jA 489 6.95e-07 c.69.1.1 34631 2qm0A 275 7.40e-07 1tqhA 247 7.80e-07 c.69.1.29 107225 1cr6B 554 7.83e-07 c.69.1.11,c.108.1.2 34688,43338 1womA 271 8.66e-07 1din 236 8.66e-07 1ede 310 8.72e-07 1aqlA 532 9.09e-07 c.69.1.1 34627 1j1iA 296 9.27e-07 c.69.1.10 83977 1xfdA 723 1.06e-06 b.70.3.1,c.69.1.24 115251,115252 1thg 544 1.07e-06 1zoiA 276 1.08e-06 2b20A 403 1.11e-06 b.1.18.20,c.69.1.2 127685,127686 1azwA 313 1.20e-06 c.69.1.7 34658 1broA 277 1.23e-06 c.69.1.12 34700 1xqwA 293 1.38e-06 1dqyA 283 1.38e-06 c.69.1.3 34640 2qmqA 286 1.40e-06 3bxpA 277 1.47e-06 1a88A 275 1.47e-06 c.69.1.12 34707 2o7rA 338 1.66e-06 2bceA 585 1.69e-06 c.69.1.1 34625 3b5eA 223 1.84e-06 1uk8A 282 1.87e-06 c.69.1.10 107907 1vlqA 337 2.00e-06 c.69.1.25 108848 1jkmA 358 2.03e-06 c.69.1.2 34633 1brt 277 2.16e-06 1va4A 279 2.26e-06 c.69.1.12 108458 2bklA 695 2.66e-06 1zd3A 555 2.79e-06 c.108.1.2,c.69.1.11 124930,124931 1r1dA 247 3.09e-06 c.69.1.29 96813 1e8nA 710 3.23e-06 b.69.7.1,c.69.1.4 27675,34643 1llfA 534 3.30e-06 c.69.1.17 78094 1hkhA 279 3.33e-06 c.69.1.12 90628 3c5vA 316 3.90e-06 1cv2A 296 4.31e-06 c.69.1.8 34680 1yr2A 741 4.43e-06 1cqwA 295 4.51e-06 c.69.1.8 34679 1xklA 273 4.52e-06 c.69.1.20 115410 3c8dA 403 4.52e-06 1h2wA 710 4.71e-06 b.69.7.1,c.69.1.4 76596,76597 1bn7A 294 5.14e-06 c.69.1.8 34677 1q0rA 298 5.42e-06 c.69.1.28 95508 1bn6A 294 5.50e-06 c.69.1.8 34678 1a8uA 277 5.97e-06 c.69.1.12 34703 2uz0A 263 6.17e-06 1brtA 277 6.20e-06 c.69.1.12 34699 2og1A 286 6.27e-06 1a8sA 273 6.42e-06 c.69.1.12 34710 2e3jA 356 6.76e-06 1m33A 258 6.84e-06 c.69.1.26 78514 1wm1A 317 7.30e-06 c.69.1.7 109405 1yasA 257 7.48e-06 c.69.1.20 34801 1ehyA 294 8.37e-06 c.69.1.11 34693 2pujA 286 8.59e-06 2puhA 286 8.90e-06 1cleA 534 9.27e-06 c.69.1.17 34771 3bwxA 285 1.27e-05 2psdA 318 1.29e-05 1iz7A 295 1.36e-05 c.69.1.8 76982 2fx5A 258 1.38e-05 1ukcA 522 1.51e-05 c.69.1.17 107911 2cjpA 328 1.53e-05 3bf7A 255 1.66e-05 2rhwA 283 1.76e-05 1mj5A 302 1.93e-05 c.69.1.8 91285 1qj4A 257 1.93e-05 c.69.1.20 34796 1dx4A 586 2.03e-05 c.69.1.1 34622 1ju3A 583 2.03e-05 b.18.1.13,c.69.1.21 67300,67301 2rauA 354 2.04e-05 2qjwA 176 2.09e-05 2bce 581 2.11e-05 1a8qA 274 2.50e-05 c.69.1.12 34702 1r3dA 264 2.56e-05 c.69.1.35 111680 1y37A 304 2.85e-05 2o2iA 300 3.02e-05 2yysA 286 3.88e-05 1mpxA 615 4.37e-05 b.18.1.13,c.69.1.21 85041,85042 2d80A 318 5.24e-05 1ys1X 320 5.86e-05 1qfmA 710 6.70e-05 b.69.7.1,c.69.1.4 27673,34641 2qruA 274 7.21e-05 1cvlA 319 9.46e-05 c.69.1.18 34786 1qo7A 394 9.87e-05 c.69.1.11 34697 2qvbA 297 0.000101 2pl5A 366 0.000121 2d81A 318 0.000129 1vkhA 273 0.000132 c.69.1.32 108662 1k8qA 377 0.000157 c.69.1.6 72177 2gzsA 278 0.000207 1tahA 318 0.000247 c.69.1.18 34775 1cvl 319 0.000404 1mnaA 298 0.000420 c.69.1.22 79322 1qlwA 328 0.000476 c.69.1.15 34722 1hlgA 371 0.000488 c.69.1.6 34656 2veoA 441 0.000575 2b61A 377 0.000619 1kezA 300 0.000728 c.69.1.22 68546 2qs9A 194 0.001023 1mo2A 294 0.001727 c.69.1.22 79331 1i6wA 181 0.001779 c.69.1.18 61859 3bdvA 191 0.001797 1lnsA 763 0.001857 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ispA 181 0.001943 c.69.1.18 76778 1tcaA 317 0.002662 c.69.1.17 34726 1thtA 305 0.002992 c.69.1.13 34711 1bu8A 452 0.004007 b.12.1.2,c.69.1.19 23647,34795 1tca 317 0.004401 1gpl 432 0.004969 1ycdA 243 0.006101 2q0xA 335 0.02130 1hplA 449 0.02481 b.12.1.2,c.69.1.19 23639,34787 1tib 269 0.07101 1ivyA 452 0.07868 c.69.1.5 34654 1uxoA 192 0.1119 c.69.1.31 108121 1gt6A 269 0.1766 c.69.1.17 76342 1tibA 269 0.2973 c.69.1.17 34738 1pjaA 302 0.3136 c.69.1.13 94758 1uswA 260 0.3496 c.69.1.17 99895 1uwcA 261 0.4690 c.69.1.17 100101 1ei9A 279 0.4977 c.69.1.13 34713 3tglA 269 0.5636 c.69.1.17 34733 2bjhA 260 0.6081 2oryA 346 1.287 1ac5 483 1.582 1lgyA 269 1.836 c.69.1.17 34758 2cb9A 244 2.021 1ku0A 388 2.749 c.69.1.18 72994 1whtA 256 2.876 c.69.1.5 34646 2hfkA 319 2.888 1whsA 255 2.986 c.69.1.5 34649 1bcsA 263 3.289 c.69.1.5 34647 1ic6A 279 4.314 c.41.1.1 62257 2dsnA 387 4.407 1j8mF 297 5.457 a.24.13.1,c.37.1.10 62742,62743 2qvpA 275 5.870 1e8cA 498 8.961 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2px6A 316 10.01 2z5gA 387 12.23 1eiwA 111 14.70 c.23.3.1 31130 1t9bA 677 15.84 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1jmkC 230 16.07 c.69.1.22 71747 1eudA 311 16.30 c.2.1.8,c.23.4.1 30312,31140 1h0hA 977 18.47 b.52.2.2,c.81.1.1 76435,76436 2bz1A 196 18.95 c.144.1.1 129532 3cdxA 354 20.09 2pqmA 343 27.35 1pydA 556 28.13 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1drwA 273 28.23 c.2.1.3,d.81.1.3 30057,39972 2i7cA 283 30.13 3b2yA 275 30.47 2ag6A 314 31.58 1ybhA 590 34.81 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1ac5A 483 36.27 c.69.1.5 34653 1v7pC 200 40.54 c.62.1.1 108408 1qpbA 563 41.50 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1kbjA 412 44.70 c.1.4.1 72280 2nxfA 322 45.00 1j9eA 147 46.23 c.23.5.1 62756 2pgnA 589 47.28 1edg 380 48.44 1g66A 207 48.62 c.69.1.30 31329 2csuA 457 50.20 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 3c8uA 208 50.58 1p9lA 245 51.07 c.2.1.3,d.81.1.3 94393,94394 1ceoA 343 55.90 c.1.8.3 28808 1poxA 585 59.18 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2ctc 307 60.01 1gci 269 61.49 7a3hA 303 64.56 c.1.8.3 28817 2p8eA 307 65.04 1bu6O 501 65.11 c.55.1.4,c.55.1.4 33499,33500 2g1pA 278 65.53 1vmaA 306 65.93 a.24.13.1,c.37.1.10 108887,108888 1sq5A 308 68.11 c.37.1.6 105882 1f4pA 147 69.08 c.23.5.1 59651 2jgdA 933 70.61 1sh7A 284 72.00 2fywA 267 72.07 c.135.1.1 134408 2dpmA 284 72.32 c.66.1.28 34246 1jscA 630 74.52 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 1d3gA 367 74.58 c.1.4.1 28600 1ozhA 566 78.08 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2czqA 205 78.46 2ez9A 603 79.45 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1ve1A 304 79.64 c.79.1.1 120007 1oxwA 373 80.46 c.19.1.3 87539 5nul 138 80.80 2ax4A 198 81.40 2fcrA 173 81.45 c.23.5.1 31151 2driA 271 82.00 c.93.1.1 35637 1bfd 528 83.23 1h5vA 304 83.75 c.1.8.3 70898 1vl6A 388 84.06 c.2.1.7,c.58.1.3 108724,108725 1rttA 193 84.66 c.23.5.4 105098 1cz1A 394 84.97 c.1.8.3 28839 2yvuA 186 86.62 1jffB 445 88.17 c.32.1.1,d.79.2.1 62934,62935