# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 1.994 1r88A 280 2.134 c.69.1.3 97219 2z3zA 706 2.328 1jjfA 268 2.526 c.69.1.2 66765 1f0nA 285 2.604 c.69.1.3 34636 1orvA 728 2.668 b.70.3.1,c.69.1.24 87354,87355 1dqzA 280 3.157 c.69.1.3 34638 2hu5A 582 3.289 b.69.7.2,c.69.1.33 136763,136764 1fj2A 232 3.345 c.69.1.14 34720 2uz0A 263 3.393 1l7aA 318 3.442 c.69.1.25 77772 1dqyA 283 3.557 c.69.1.3 34640 3bdiA 207 3.900 2jbwA 386 4.015 1auoA 218 4.080 c.69.1.14 34716 2hdwA 367 4.118 1jfrA 262 4.174 c.69.1.16 34724 1a88A 275 4.453 c.69.1.12 34707 1u2eA 289 5.133 1jjiA 311 5.192 c.69.1.2 66766 1zoiA 276 5.384 1q0rA 298 5.395 c.69.1.28 95508 2ocgA 254 5.535 1broA 277 5.558 c.69.1.12 34700 2b20A 403 5.580 b.1.18.20,c.69.1.2 127685,127686 1imjA 210 5.638 c.69.1.23 71246 1jkmA 358 5.659 c.69.1.2 34633 1h2xA 710 5.718 b.69.7.1,c.69.1.4 76598,76599 2i3dA 249 5.855 2bklA 695 5.878 1ufoA 238 5.899 c.69.1.27 99344 1o6gA 710 5.900 b.69.7.1,c.69.1.4 81087,81088 1lzlA 323 6.042 c.69.1.2 78306 2o7rA 338 6.075 1xfdA 723 6.309 b.70.3.1,c.69.1.24 115251,115252 1hkhA 279 6.455 c.69.1.12 90628 1c4xA 285 6.465 c.69.1.10 34684 1azwA 313 6.483 c.69.1.7 34658 2hm7A 310 6.507 1e8nA 710 6.533 b.69.7.1,c.69.1.4 27675,34643 1va4A 279 6.544 c.69.1.12 108458 2puhA 286 6.690 1u4nA 310 6.740 c.69.1.2 113021 1h2wA 710 6.867 b.69.7.1,c.69.1.4 76596,76597 1vlqA 337 6.882 c.69.1.25 108848 1qtrA 317 7.061 c.69.1.7 34660 1j1iA 296 7.127 c.69.1.10 83977 2o2gA 223 7.226 1mtzA 293 7.240 c.69.1.7 79467 1pv1A 299 7.441 c.69.1.34 111639 1a8uA 277 7.836 c.69.1.12 34703 2rhwA 283 7.931 2pujA 286 7.969 2og1A 286 8.001 2qm0A 275 8.017 1a8sA 273 8.412 c.69.1.12 34710 1ehyA 294 8.452 c.69.1.11 34693 1zi8A 236 8.610 2r8bA 251 8.728 1yr2A 741 8.893 1din 236 9.092 2pl5A 366 9.260 1ggvA 232 9.368 c.69.1.9 34683 1a8qA 274 9.385 c.69.1.12 34702 3c5vA 316 9.451 1m33A 258 9.676 c.69.1.26 78514 1xklA 273 9.729 c.69.1.20 115410 2b61A 377 9.758 1uk8A 282 9.890 c.69.1.10 107907 2qmqA 286 10.19 2pblA 262 10.47 1bn7A 294 10.54 c.69.1.8 34677 1brt 277 10.56 1cqwA 295 10.61 c.69.1.8 34679 3bxpA 277 10.65 1qfmA 710 10.68 b.69.7.1,c.69.1.4 27673,34641 2yysA 286 10.89 1cv2A 296 11.02 c.69.1.8 34680 1womA 271 11.03 1wm1A 317 11.18 c.69.1.7 109405 3c8dA 403 11.21 1r1dA 247 11.29 c.69.1.29 96813 1y37A 304 11.38 3b5eA 223 11.68 1yasA 257 11.85 c.69.1.20 34801 1mpxA 615 11.99 b.18.1.13,c.69.1.21 85041,85042 2fukA 220 11.99 1r3dA 264 12.03 c.69.1.35 111680 2e3jA 356 12.32 1mj5A 302 12.61 c.69.1.8 91285 1c7jA 489 12.95 c.69.1.1 34631 2gzsA 278 12.97 1p0iA 529 13.08 c.69.1.1 93867 3bwxA 285 13.17 1tqhA 247 13.20 c.69.1.29 107225 1thgA 544 13.23 c.69.1.17 34763 1c7iA 489 13.38 c.69.1.1 34632 1vkhA 273 13.44 c.69.1.32 108662 1xqwA 293 13.60 1qj4A 257 13.63 c.69.1.20 34796 2veoA 441 14.25 2ogtA 498 14.28 1iz7A 295 14.43 c.69.1.8 76982 1k8qA 377 14.49 c.69.1.6 72177 2psdA 318 14.87 1bn6A 294 14.97 c.69.1.8 34678 1brtA 277 15.31 c.69.1.12 34699 3bf7A 255 15.75 2qruA 274 15.83 1b6g 310 15.97 1ede 310 17.00 1qlwA 328 18.13 c.69.1.15 34722 1hlgA 371 18.16 c.69.1.6 34656 1qo7A 394 19.19 c.69.1.11 34697 1gkkA 297 19.37 c.69.1.2 65248 2o2iA 300 20.20 2bceA 585 20.20 c.69.1.1 34625 1qe3A 489 20.90 c.69.1.1 34630 2h7cA 542 20.99 c.69.1.1 136207 1ukcA 522 21.10 c.69.1.17 107911 3bixA 574 21.82 1ju3A 583 22.32 b.18.1.13,c.69.1.21 67300,67301 1ea5A 537 22.80 c.69.1.1 34592 1cr6B 554 23.32 c.69.1.11,c.108.1.2 34688,43338 1aqlA 532 24.40 c.69.1.1 34627 1zd3A 555 24.62 c.108.1.2,c.69.1.11 124930,124931 1tahA 318 24.76 c.69.1.18 34775 2cjpA 328 25.97 1b6gA 310 26.36 c.69.1.8 34661 1cvl 319 28.16 1ycdA 243 28.45 1thg 544 28.88 2qvbA 297 29.68 2qjwA 176 29.76 1thtA 305 31.26 c.69.1.13 34711 2qs9A 194 31.76 1pjaA 302 32.04 c.69.1.13 94758 1ys1X 320 32.11 1cvlA 319 35.06 c.69.1.18 34786 2bce 581 35.24 1tca 317 39.83 1uxoA 192 41.70 c.69.1.31 108121 2d81A 318 41.74 2d80A 318 43.64 1llfA 534 46.28 c.69.1.17 78094 1tcaA 317 46.51 c.69.1.17 34726 1i6wA 181 46.88 c.69.1.18 61859 1wb4A 297 47.20 c.69.1.2 120827 2fx5A 258 49.40 1dx4A 586 52.66 c.69.1.1 34622 2rauA 354 56.18 1cleA 534 57.92 c.69.1.17 34771 1ei9A 279 63.29 c.69.1.13 34713 1ivyA 452 63.60 c.69.1.5 34654 1ispA 181 67.78 c.69.1.18 76778 3bdvA 191 67.88 1gpl 432 69.31 1ac5A 483 69.96 c.69.1.5 34653 1ac5 483 73.08 1bu8A 452 77.19 b.12.1.2,c.69.1.19 23647,34795 1kezA 300 79.30 c.69.1.22 68546 1jmkC 230 87.04 c.69.1.22 71747