# List of top-scoring protein chains for T0413.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1va4A 279 8.23e-16 c.69.1.12 108458 1a88A 275 1.76e-15 c.69.1.12 34707 1zoiA 276 2.41e-15 1a8sA 273 3.35e-15 c.69.1.12 34710 1u4nA 310 3.80e-15 c.69.1.2 113021 1evqA 310 4.11e-15 c.69.1.2 34635 2hm7A 310 7.19e-15 2og1A 286 1.52e-14 1jjiA 311 6.59e-14 c.69.1.2 66766 2puhA 286 7.33e-14 2rhwA 283 7.84e-14 2zjfA 362 8.62e-14 2e3jA 356 9.21e-14 2c7bA 311 1.13e-13 1hkhA 279 1.18e-13 c.69.1.12 90628 1j1iA 296 1.56e-13 c.69.1.10 83977 1a8qA 274 1.73e-13 c.69.1.12 34702 1xrrA 293 1.78e-13 1mtzA 293 1.84e-13 c.69.1.7 79467 1xrlA 293 1.84e-13 1u2eA 289 1.86e-13 1xroA 293 1.87e-13 1wm1A 317 1.99e-13 c.69.1.7 109405 2vf2A 311 2.38e-13 1c4xA 285 2.43e-13 c.69.1.10 34684 1zd3A 555 2.64e-13 c.108.1.2,c.69.1.11 124930,124931 1xqvA 293 3.34e-13 1broA 277 4.08e-13 c.69.1.12 34700 2qzpA 562 4.80e-13 2d0dA 282 5.56e-13 1a8uA 277 5.88e-13 c.69.1.12 34703 1cr6A 554 6.05e-13 c.69.1.11,c.108.1.2 34687,43337 1xqwA 293 9.00e-13 1brtA 277 1.11e-12 c.69.1.12 34699 1qe3A 489 1.22e-12 c.69.1.1 34630 2hu5A 582 1.27e-12 b.69.7.2,c.69.1.33 136763,136764 1azwA 313 1.36e-12 c.69.1.7 34658 1c7jA 489 1.45e-12 c.69.1.1 34631 1k4yA 534 1.48e-12 c.69.1.1 72069 1mx1A 548 1.51e-12 c.69.1.1 85165 2h7cA 542 1.60e-12 c.69.1.1 136207 2pujA 286 1.61e-12 2hrrA 532 1.66e-12 c.69.1.1 136696 1uk8A 282 2.92e-12 c.69.1.10 107907 1c7iA 489 3.01e-12 c.69.1.1 34632 2ogsA 498 3.30e-12 2ogtA 498 3.51e-12 1lzlA 323 3.51e-12 c.69.1.2 78306 1f8uA 583 3.54e-12 c.69.1.1 34620 2cjpA 328 3.88e-12 2ockA 254 3.99e-12 2ecfA 741 4.04e-12 1c2oA 539 4.51e-12 c.69.1.1 34610 1jmyA 522 4.56e-12 c.69.1.1 63182 1c2bA 540 5.03e-12 c.69.1.1 34614 1b41A 539 5.10e-12 c.69.1.1 34621 1n5mA 541 5.20e-12 c.69.1.1 80031 1f6wA 533 5.50e-12 c.69.1.1 34629 1ku6A 549 5.78e-12 c.69.1.1 91037 1maaA 547 5.89e-12 c.69.1.1 34615 2ha2A 543 6.02e-12 c.69.1.1 136274 2ocgA 254 6.10e-12 2c0pA 548 6.11e-12 c.69.1.1 129600 1q84A 580 6.23e-12 c.69.1.1 96156 3bdiA 207 6.98e-12 2hu8A 582 6.99e-12 b.69.7.2,c.69.1.33 136772,136773 1q0rA 298 9.31e-12 c.69.1.28 95508 1aknA 579 1.11e-11 c.69.1.1 34626 2bceA 579 1.11e-11 c.69.1.1 34625 2pm8A 574 1.31e-11 1aqlA 532 1.35e-11 c.69.1.1 34627 2jf0A 548 1.42e-11 3bwxA 285 1.44e-11 1p0iA 529 1.48e-11 c.69.1.1 93867 2j4cA 529 1.86e-11 3bl8A 580 2.31e-11 3bf7A 255 2.87e-11 1bn7A 294 2.98e-11 c.69.1.8 34677 1ehyA 294 3.01e-11 c.69.1.11 34693 2oclA 254 3.06e-11 2ha5A 543 3.11e-11 1cqwA 295 3.40e-11 c.69.1.8 34679 3bf8A 255 5.01e-11 1y37A 304 5.02e-11 3bixA 574 7.28e-11 1m33A 258 8.10e-11 c.69.1.26 78514 2r11A 306 8.60e-11 1gqrA 532 8.62e-11 c.69.1.1 70374 2dfpA 534 8.81e-11 c.69.1.1 34597 1eeaA 534 8.87e-11 c.69.1.1 34609 2cekA 535 8.99e-11 c.69.1.1 130347 1ut6A 537 9.06e-11 c.69.1.1 119698 1ea5A 537 9.45e-11 c.69.1.1 34592 1fj2A 232 9.52e-11 c.69.1.14 34720 1womA 271 9.82e-11 3b3qA 577 9.93e-11 1w6rA 543 1.04e-10 c.69.1.1 114283 3be8A 588 1.19e-10 2o7rA 338 1.32e-10 1vlqA 337 1.32e-10 c.69.1.25 108848 2vh8A 562 1.32e-10 2fj0A 551 1.81e-10 2hdwA 367 2.06e-10 2c58A 537 2.24e-10 c.69.1.1 129891 1l7aA 318 2.30e-10 c.69.1.25 77772 1jkmA 361 3.05e-10 c.69.1.2 34633 2r8bA 251 4.20e-10 1auoA 218 5.25e-10 c.69.1.14 34716 2yysA 286 5.78e-10 1tqhA 247 6.85e-10 c.69.1.29 107225 1odsA 318 7.09e-10 c.69.1.25 86877 1thgA 544 8.85e-10 c.69.1.17 34763 1r1dA 247 8.98e-10 c.69.1.29 96813 1hdeA 310 1.23e-09 c.69.1.8 34675 1gz7A 534 1.30e-09 c.69.1.17 83401 1b6gA 310 1.30e-09 c.69.1.8 34661 1bezA 310 1.31e-09 c.69.1.8 34666 2yxpX 310 1.31e-09 2gbcA 730 1.35e-09 1hlgA 371 1.41e-09 c.69.1.6 34656 1odtC 318 1.67e-09 c.69.1.25 86885 2uz0A 263 1.85e-09 1pv1A 299 1.85e-09 c.69.1.34 111639 1zixA 236 2.02e-09 1zicA 236 2.03e-09 1z68A 719 2.03e-09 1zi6A 236 2.08e-09 1zi9A 236 2.12e-09 2z3zA 706 2.21e-09 2d5lA 706 2.44e-09 1zi8A 236 2.83e-09 2i3dA 249 3.02e-09 1jfrA 262 3.21e-09 c.69.1.16 34724 1cleA 534 3.36e-09 c.69.1.17 34771 1llfA 534 3.36e-09 c.69.1.17 78094 1dinA 236 3.70e-09 c.69.1.9 34682 1orvA 728 3.72e-09 b.70.3.1,c.69.1.24 87354,87355 2o2gA 223 4.14e-09 1k8qA 377 4.31e-09 c.69.1.6 72177 1ggvA 232 4.57e-09 c.69.1.9 34683 1ziyA 236 5.34e-09 1zj4A 236 5.46e-09 1jjfA 268 6.20e-09 c.69.1.2 66765 2rguA 734 6.71e-09 3c45A 728 6.86e-09 1tk3A 728 6.88e-09 b.70.3.1,c.69.1.24 107069,107070 2oncA 731 6.93e-09 2ripA 729 7.04e-09 3bjrA 283 7.05e-09 2g63A 726 7.20e-09 b.70.3.1,c.69.1.24 134686,134687 1pfqA 731 7.26e-09 b.70.3.1,c.69.1.24 88061,88062 1r9mA 733 7.30e-09 b.70.3.1,c.69.1.24 104870,104871 1wcyA 740 7.32e-09 b.70.3.1,c.69.1.24 120903,120904 2h1iA 226 7.36e-09 1zj5A 236 7.43e-09 2bgrA 738 7.67e-09 b.70.3.1,c.69.1.24 128496,128497 1r9nA 739 7.76e-09 b.70.3.1,c.69.1.24 118745,118746 1crlA 534 8.28e-09 c.69.1.17 34765 1lppA 549 9.45e-09 c.69.1.17 34764 1ukcA 522 1.13e-08 c.69.1.17 107911 2qt9A 766 1.15e-08 2dcmA 706 1.38e-08 1u8eA 728 1.41e-08 b.70.3.1,c.69.1.24 107733,107734 1dx4A 585 1.43e-08 c.69.1.1 34622 2pblA 262 1.77e-08 3c5vA 316 3.34e-08 1ufoA 238 3.59e-08 c.69.1.27 99344 2fukA 220 4.44e-08 2jbwA 386 4.74e-08 1jt2A 268 5.52e-08 c.69.1.2 71858 2pl5A 366 6.08e-08 1imjA 210 6.62e-08 c.69.1.23 71246 2psfA 310 8.68e-08 2psjA 319 9.19e-08 2psdA 318 9.24e-08 3b5eA 223 9.57e-08 2b61A 377 1.07e-07 1r3dA 264 1.12e-07 c.69.1.35 111680 3bxpA 277 1.19e-07 2pshA 319 1.70e-07 3c5wP 310 2.04e-07 2bklA 695 3.23e-07 1h2wA 710 3.94e-07 b.69.7.1,c.69.1.4 76596,76597 1e5tA 710 4.05e-07 b.69.7.1,c.69.1.4 27676,34644 1vz2A 710 4.32e-07 b.69.7.1,c.69.1.4 108945,108946 1vz3A 710 4.48e-07 b.69.7.1,c.69.1.4 108947,108948 1h2xA 710 8.26e-07 b.69.7.1,c.69.1.4 76598,76599 1cv2A 296 1.00e-06 c.69.1.8 34680 1mj5A 302 1.01e-06 c.69.1.8 91285 1iz7A 295 1.02e-06 c.69.1.8 76982 1g42A 296 1.07e-06 c.69.1.8 65139 2rauA 354 1.79e-06 1ys1X 320 1.81e-06 4lipD 320 1.94e-06 c.69.1.18 34783 2o2iA 300 2.07e-06 2qvbA 297 2.13e-06 1o6gA 710 2.42e-06 b.69.7.1,c.69.1.4 81087,81088 1o6fA 710 2.55e-06 b.69.7.1,c.69.1.4 81085,81086 1y7iA 268 2.68e-06 c.69.1.20 116546 1xklA 273 3.16e-06 c.69.1.20 115410 1e8nA 710 3.91e-06 b.69.7.1,c.69.1.4 27675,34643 3bdvA 191 4.15e-06 1ivyA 452 5.51e-06 c.69.1.5 34654 2qruA 274 7.36e-06 2qm0A 275 7.41e-06 1l7rA 574 7.52e-06 b.18.1.13,c.69.1.21 77793,77794 1wpxA 421 1.03e-05 c.69.1.5 121156 1qgeD 222 1.20e-05 c.69.1.18 34773 1cpyA 421 1.27e-05 c.69.1.5 34651 1ju3A 583 1.31e-05 b.18.1.13,c.69.1.21 67300,67301 2qs9A 194 1.40e-05 2qmqA 286 3.20e-05 1dqyA 283 3.52e-05 c.69.1.3 34640 1cvlA 319 4.09e-05 c.69.1.18 34786 1tahA 318 4.22e-05 c.69.1.18 34775 1mpxA 615 4.70e-05 b.18.1.13,c.69.1.21 85041,85042 1va5A 303 4.83e-05 c.69.1.3 108464 1dqzA 280 5.14e-05 c.69.1.3 34638 1l7qA 574 5.31e-05 b.18.1.13,c.69.1.21 77791,77792 1vkhA 273 6.22e-05 c.69.1.32 108662 2gzsA 278 6.31e-05 2fx5A 258 8.47e-05 1xfdA 723 9.54e-05 b.70.3.1,c.69.1.24 115251,115252 1yr2A 741 0.000152 1thtA 305 0.000160 c.69.1.13 34711 2oxeA 466 0.000190 1ycdA 243 0.000221 2pvsA 452 0.000226 1r88A 280 0.000244 c.69.1.3 97219 1mnaA 298 0.000317 c.69.1.22 79322 2h7xA 319 0.000373 c.69.1.22 136227 1sfrA 304 0.000477 c.69.1.3 105500 1lpbB 449 0.000560 b.12.1.2,c.69.1.19 23643,34791 2qjwA 176 0.000628 2b9vA 652 0.000650 b.18.1.13,c.69.1.21 128199,128200 1ryyA 652 0.000652 b.18.1.13,c.69.1.21 118821,118822 1f0nA 285 0.000725 c.69.1.3 34636 1w52X 452 0.000928 1gplA 432 0.001023 b.12.1.2,c.69.1.19 23645,34793 1sckA 257 0.001140 c.69.1.20 105421 1gkkA 297 0.001159 c.69.1.2 65248 1ex9A 285 0.001206 c.69.1.18 34785 1t2nA 181 0.001492 c.69.1.18 112226 1t4mA 181 0.001782 c.69.1.18 112243 2pplA 485 0.001868 1ispA 181 0.001889 c.69.1.18 76778 1bu8A 452 0.002195 b.12.1.2,c.69.1.19 23647,34795 2qxuA 179 0.002276 1yb6A 256 0.002315 c.69.1.20 122870 1qj4A 257 0.002334 c.69.1.20 34796 2hfkA 319 0.002742 1wb4A 297 0.003438 c.69.1.2 120827 1whsA 255 0.004639 c.69.1.5 34649 1nx9A 652 0.004932 b.18.1.13,c.69.1.21 92285,92286 1whtA 256 0.004946 c.69.1.5 34646 1qlwA 328 0.005007 c.69.1.15 34722 1ac5A 483 0.005140 c.69.1.5 34653 1bcsA 263 0.005380 c.69.1.5 34647 1ethA 448 0.006489 b.12.1.2,c.69.1.19 23641,34789 1rp1A 450 0.006688 b.12.1.2,c.69.1.19 23646,34794 1pjaA 302 0.006856 c.69.1.13 94758 3c8dA 403 0.007199 3sc2A 259 0.007496 c.69.1.5 34648 2q0xA 335 0.009830 2dsnA 387 0.01148 1uxoA 192 0.01150 c.69.1.31 108121 1hplA 449 0.01193 b.12.1.2,c.69.1.19 23639,34787 1ku0A 388 0.01239 c.69.1.18 72994 1ji3A 388 0.01297 c.69.1.18 77115 2z5gA 387 0.01432 2qubA 615 0.01569 1kezA 300 0.01651 c.69.1.22 68546 1qo7A 394 0.01849 c.69.1.11 34697 1mo2A 294 0.02100 c.69.1.22 79331 1dwqA 262 0.02896 c.69.1.20 34808 1dwoA 262 0.05171 c.69.1.20 34804 1eb8A 262 0.06008 c.69.1.20 64896 1gxsA 270 0.08080 c.69.1.5 76375 2veoA 441 0.2454 2d80A 318 0.2468 1ei9A 279 0.2689 c.69.1.13 34713 1tcaA 317 0.3069 c.69.1.17 34726 1e89A 262 0.4766 c.69.1.20 59375 1gxsB 158 0.4929 1tiaA 279 0.9757 c.69.1.17 34737 2hihA 431 0.9789 2z8zA 617 1.251 2z8xA 617 1.280 1jmkC 230 1.674 c.69.1.22 71747 4tglA 269 1.735 c.69.1.17 34735 5tglA 269 1.767 c.69.1.17 34736 1tglA 269 1.776 c.69.1.17 34734 1lgyA 269 1.838 c.69.1.17 34758 1tibA 269 1.892 c.69.1.17 34738 2px6A 316 1.911 2yvuA 186 1.912 3tglA 269 2.185 c.69.1.17 34733 1bcsB 160 2.429 3sc2B 152 2.563 1whsB 153 2.580 2d81A 318 2.592 2pidA 356 2.871 1xktA 289 2.953 c.69.1.22 115423 2o2zA 323 7.220 2jfnA 285 7.561 1xziA 214 7.763 c.69.1.30 31297 1oxwA 373 8.243 c.19.1.3 87539 2f5xA 312 10.42 1zrhA 274 10.66 2e0tA 151 12.38 2jbvA 546 14.28 2hzbA 333 15.29 c.143.1.1 136911 2p1jA 186 15.35 1xzfA 214 17.62 c.69.1.30 31291 1xzhA 214 18.26 c.69.1.30 31293 1tqyA 424 18.45 c.95.1.1,c.95.1.1 107245,107246 1xzcA 214 18.64 c.69.1.30 31298 1cuzA 214 19.88 c.69.1.30 31314 1gt6A 269 22.28 c.69.1.17 76342 1o89A 345 22.59 b.35.1.2,c.2.1.1 92644,92645 1qozA 207 24.33 c.69.1.30 31332 1g66A 207 24.89 c.69.1.30 31329 2cb9A 244 25.19 1cuuA 214 25.75 c.69.1.30 31309 1cueA 197 26.12 c.69.1.30 31322 3cbwA 353 26.28 1dxlA 470 26.43 c.3.1.5,c.3.1.5,d.87.1.1 30585,30586,40214 1jchA 551 26.72 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 1cusA 200 26.83 c.69.1.30 31287 2b5uA 551 27.02 b.101.1.1,b.110.1.1,h.4.9.1 127906,127907,127908 1agyA 200 27.13 c.69.1.30 31286 2oz3A 404 27.65 2cutA 198 27.87 c.69.1.30 31315 1x8hA 228 27.88 d.157.1.1 114961 1x8iA 227 28.30 d.157.1.1 114962 1xzdA 214 28.50 c.69.1.30 31321 2qdsA 227 28.56 1xzgA 214 28.68 c.69.1.30 31292 1xzlA 214 29.04 c.69.1.30 31295 1cubA 214 29.50 c.69.1.30 31304 2iumA 248 29.56 1cuyA 214 29.80 c.69.1.30 31302 1cuhA 214 30.00 c.69.1.30 31311 1cs0A 1073 30.31 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1cufA 214 30.54 c.69.1.30 31301 1cuaA 214 30.77 c.69.1.30 31313 2cb1A 412 31.01 1cexA 214 31.19 c.69.1.30 31285 1ffbA 214 31.20 c.69.1.30 31305 1cugA 214 32.48 c.69.1.30 31308 1ffeA 214 32.66 c.69.1.30 31288 1a9xA 1073 33.91 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1m6vA 1073 33.95 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 74536,74537,74538,74539,74540,74541 1ffaA 214 34.64 c.69.1.30 31289 1ffcA 214 34.72 c.69.1.30 31296 1nciA 110 35.10 b.1.6.1 22191 1ffdA 214 35.58 c.69.1.30 31290 1cuvA 214 35.90 c.69.1.30 31318 2qj3A 322 36.13 1uswA 260 37.43 c.69.1.17 99895 2r00A 336 39.59 2r00C 336 40.15 1cuxA 214 40.25 c.69.1.30 31306 2pyxA 526 40.73 1cuwA 214 41.61 c.69.1.30 31324 1xtqA 177 42.12 c.37.1.8 122297 2hl6A 260 42.30 c.69.1.17 136561 1pi3A 528 43.42 c.31.1.3,c.36.1.5,c.36.1.9 111633,111634,111635 1uwcA 261 43.96 c.69.1.17 100101 1ynoA 527 45.40 c.31.1.3,c.36.1.5,c.36.1.9 123747,123748,123749 2fwnA 528 45.70 c.31.1.3,c.36.1.5,c.36.1.9 134249,134250,134251 1q6zA 528 45.96 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1eiwA 111 46.80 c.23.3.1 31130 2ekpA 239 46.98 1am4D 177 47.56 c.37.1.8 32068 2dknA 255 49.69 1z9nA 177 49.82 2fn3A 528 50.71 c.31.1.3,c.36.1.5,c.36.1.9 133803,133804,133805 1xzeA 214 50.76 c.69.1.30 31310 1z9pA 155 52.51 1vkjA 285 55.55 c.37.1.5 108666 2qpqA 301 55.83 2i7vA 459 55.86 1cujA 214 58.36 c.69.1.30 31294 2e4gA 550 58.39 2dt8A 280 59.51 2yzmA 319 59.88 1chdA 203 60.95 c.40.1.1 32478 2vouA 397 61.01 2fb9A 322 62.80 2gya3 119 64.37 1rquA 120 64.43 a.108.1.1,d.45.1.1 97773,97774 1uayA 242 68.42 c.2.1.2 88390 3c6qA 311 70.95 2hstA 143 74.57 1r3sA 367 77.17 c.1.22.1 96963 1fcqA 350 78.06 c.1.8.9 65006 1xzjA 214 78.13 c.69.1.30 31299 2cdh4 305 78.58 2qq6A 410 81.01 2cf2B 304 81.56 1iayA 428 81.61 c.67.1.4 62130 1rc2A 231 82.06 f.19.1.1 97281 1v2dA 381 82.19 c.67.1.1 108281 2dfaA 250 82.98 c.6.2.5 131469 1ftxA 387 83.13 b.49.2.2,c.1.6.1 76191,76192 2qc3A 303 83.34 1xg4A 295 83.54 2sfpA 388 85.06 b.49.2.2,c.1.6.1 26484,28646 1xqlA 388 85.22 1ky3A 182 86.29 c.37.1.8 73193 1p8jA 471 86.55 b.18.1.20,c.41.1.1 87946,87947 2oryA 346 86.84