# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 7.47e-20 c.69.1.25 77772 1vlqA 337 3.49e-19 c.69.1.25 108848 1u4nA 310 5.21e-19 c.69.1.2 113021 1b6g 310 6.52e-19 1b6gA 310 1.11e-18 c.69.1.8 34661 2jbwA 386 1.29e-18 1u2eA 289 1.70e-18 2hdwA 367 2.74e-18 1wm1A 317 2.75e-18 c.69.1.7 109405 1lzlA 323 2.82e-18 c.69.1.2 78306 1jkmA 358 3.09e-18 c.69.1.2 34633 2qm0A 275 3.37e-18 2og1A 286 3.66e-18 1jfrA 262 3.85e-18 c.69.1.16 34724 2pujA 286 4.12e-18 2uz0A 263 4.31e-18 2b61A 377 4.53e-18 1zi8A 236 5.13e-18 2hu5A 582 5.43e-18 b.69.7.2,c.69.1.33 136763,136764 3bdiA 207 5.50e-18 1bn7A 294 5.65e-18 c.69.1.8 34677 1zd3A 555 5.76e-18 c.108.1.2,c.69.1.11 124930,124931 1c4xA 285 6.12e-18 c.69.1.10 34684 2rhwA 283 6.26e-18 2r11A 306 6.43e-18 2z3zA 706 6.74e-18 2hm7A 310 7.35e-18 2puhA 286 8.00e-18 1k8qA 377 8.30e-18 c.69.1.6 72177 1hlgA 371 8.33e-18 c.69.1.6 34656 1q0rA 298 8.96e-18 c.69.1.28 95508 1din 236 9.45e-18 3b5eA 223 1.12e-17 2b20A 403 1.12e-17 b.1.18.20,c.69.1.2 127685,127686 2o2gA 223 1.13e-17 1vkhA 273 1.23e-17 c.69.1.32 108662 1azwA 313 1.28e-17 c.69.1.7 34658 1orvA 728 1.34e-17 b.70.3.1,c.69.1.24 87354,87355 2fx5A 258 1.48e-17 1uk8A 282 1.49e-17 c.69.1.10 107907 1jjiA 311 1.62e-17 c.69.1.2 66766 2o7rA 338 1.66e-17 3bxpA 277 1.75e-17 1zoiA 276 1.84e-17 2d5lA 706 1.91e-17 1h2wA 710 2.29e-17 b.69.7.1,c.69.1.4 76596,76597 2pl5A 366 2.44e-17 2fukA 220 2.63e-17 1fj2A 232 2.71e-17 c.69.1.14 34720 1womA 271 2.73e-17 2veoA 441 2.75e-17 2r8bA 251 2.91e-17 1auoA 218 2.93e-17 c.69.1.14 34716 1mtzA 293 3.01e-17 c.69.1.7 79467 2i3dA 249 3.26e-17 2e3jA 356 3.59e-17 1jjfA 268 3.64e-17 c.69.1.2 66765 3c8dA 403 4.23e-17 1wb4A 297 4.49e-17 c.69.1.2 120827 1f0nA 285 4.71e-17 c.69.1.3 34636 1ufoA 238 4.79e-17 c.69.1.27 99344 1xqwA 293 5.23e-17 2ocgA 254 5.29e-17 1j1iA 296 5.34e-17 c.69.1.10 83977 1a8qA 274 5.57e-17 c.69.1.12 34702 1dqzA 280 7.10e-17 c.69.1.3 34638 2qruA 274 7.18e-17 1r88A 280 7.97e-17 c.69.1.3 97219 2cjpA 328 8.14e-17 1brt 277 8.37e-17 1imjA 210 8.46e-17 c.69.1.23 71246 3bf7A 255 9.58e-17 3bwxA 285 9.67e-17 1mj5A 302 9.90e-17 c.69.1.8 91285 2qmqA 286 1.07e-16 2bklA 695 1.19e-16 3c5vA 316 1.22e-16 1va4A 279 1.27e-16 c.69.1.12 108458 1brtA 277 1.43e-16 c.69.1.12 34699 1pv1A 299 1.48e-16 c.69.1.34 111639 2o2iA 300 1.67e-16 1mpxA 615 1.71e-16 b.18.1.13,c.69.1.21 85041,85042 1xklA 273 1.90e-16 c.69.1.20 115410 2qvbA 297 1.98e-16 1hkhA 279 1.99e-16 c.69.1.12 90628 1a8sA 273 2.15e-16 c.69.1.12 34710 1o6gA 710 2.59e-16 b.69.7.1,c.69.1.4 81087,81088 1ehyA 294 2.64e-16 c.69.1.11 34693 1qj4A 257 3.15e-16 c.69.1.20 34796 1y37A 304 3.21e-16 2yysA 286 5.87e-16 1tqhA 247 7.01e-16 c.69.1.29 107225 2psdA 318 7.12e-16 1r1dA 247 7.62e-16 c.69.1.29 96813 2pblA 262 7.63e-16 1qo7A 394 7.73e-16 c.69.1.11 34697 2gzsA 278 8.41e-16 1m33A 258 1.10e-15 c.69.1.26 78514 1lnsA 763 1.46e-15 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1yr2A 741 1.47e-15 1ju3A 583 2.20e-15 b.18.1.13,c.69.1.21 67300,67301 2hfkA 319 6.53e-15 1tcaA 317 8.85e-15 c.69.1.17 34726 1ycdA 243 1.29e-14 2ogtA 498 1.78e-14 1qlwA 328 1.85e-14 c.69.1.15 34722 1qe3A 489 2.70e-14 c.69.1.1 34630 1pjaA 302 2.77e-14 c.69.1.13 94758 1cvlA 319 8.01e-14 c.69.1.18 34786 2qjwA 176 8.66e-14 2q0xA 335 1.29e-13 2rauA 354 1.30e-13 1ukcA 522 1.56e-13 c.69.1.17 107911 1r3dA 264 1.78e-13 c.69.1.35 111680 1ea5A 537 1.85e-13 c.69.1.1 34592 1tca 317 2.23e-13 1p0iA 529 2.65e-13 c.69.1.1 93867 3bdvA 191 3.47e-13 1ei9A 279 3.78e-13 c.69.1.13 34713 1mnaA 298 4.23e-13 c.69.1.22 79322 1ispA 181 8.93e-13 c.69.1.18 76778 1llfA 534 9.63e-13 c.69.1.17 78094 1thgA 544 9.69e-13 c.69.1.17 34763 3bixA 574 2.64e-12 1ys1X 320 3.33e-12 2h7cA 542 4.00e-12 c.69.1.1 136207 2qs9A 194 7.16e-12 2bceA 585 8.13e-12 c.69.1.1 34625 1cvl 319 1.18e-11 1hplA 449 1.63e-11 b.12.1.2,c.69.1.19 23639,34787 2bce 581 1.81e-11 1bu8A 452 2.27e-11 b.12.1.2,c.69.1.19 23647,34795 1uxoA 192 2.39e-11 c.69.1.31 108121 1jmkC 230 3.05e-11 c.69.1.22 71747 1thg 544 3.57e-11 2px6A 316 4.45e-11 2cb9A 244 2.83e-10 1thtA 305 1.28e-09 c.69.1.13 34711 1ivyA 452 5.57e-09 c.69.1.5 34654 2dsnA 387 2.64e-06 1ac5A 483 3.94e-06 c.69.1.5 34653 2z5gA 387 1.35e-05 1cex 214 1.88e-05 1ku0A 388 2.33e-05 c.69.1.18 72994 1uwcA 261 4.28e-05 c.69.1.17 100101 2d80A 318 5.02e-05 1tib 269 9.62e-05 1whsA 255 0.000132 c.69.1.5 34649 1g66A 207 0.000324 c.69.1.30 31329 1tibA 269 0.000682 c.69.1.17 34738 2d81A 318 0.001058 1cexA 214 0.001243 c.69.1.30 31285 2czqA 205 0.001628 3tglA 269 0.004225 c.69.1.17 34733 2oryA 346 0.02852 1edgA 380 0.3280 c.1.8.3 28807 1whsB 153 1.077 2q7xA 326 1.920 2qt1A 207 4.151 1ooeA 236 4.459 c.2.1.2 87196 2jepA 395 6.064 1o9gA 250 6.081 c.66.1.29 86692 1moq 368 6.302 1f0kA 364 6.354 c.87.1.2 35465 2df8A 325 6.865 2qtwB 546 6.867 2ppwA 216 8.286 2gruA 368 8.456 2nm0A 253 9.413 2j3hA 345 10.14 4uagA 437 10.84 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2ze7A 253 10.96 2bkaA 242 11.35 c.2.1.2 128666 2jfgA 445 12.14 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2qmoA 220 12.97 1xgkA 352 13.06 c.2.1.2 115286 3crrA 323 13.29 3b55A 451 14.11 1rrmA 386 14.46 e.22.1.2 105081 1iirA 415 14.72 c.87.1.5 62453 1v4vA 376 14.93 c.87.1.3 100313 2yvuA 186 15.05 2p91A 285 15.09 1kpgA 287 17.07 c.66.1.18 68735 2o2zA 323 17.25 2gasA 307 18.08 1pswA 348 18.21 c.87.1.7 88287 1h1nA 305 18.88 c.1.8.3 70855 1p3dA 475 19.33 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1zc6A 305 19.62 c.55.1.5,c.55.1.5 124888,124889 2deoA 230 19.90 2cb0A 333 20.89 1vf8A 377 21.18 c.1.8.5,d.26.3.1 120029,120030 1uluA 261 21.57 c.2.1.2 113292 2bcoA 350 21.71 c.56.5.7 128302 1b5pA 385 21.75 c.67.1.1 90403 2e18A 257 22.75 2i2wA 212 22.77 1hdcA 253 24.55 c.2.1.2 29862 2vc7A 314 24.70 1bf6A 291 24.87 c.1.9.3 29065 2dm6A 333 25.51 b.35.1.2,c.2.1.1 131567,131568 1w6uA 302 25.72 c.2.1.2 114288 2iw1A 374 25.72 c.87.1.8 137738 1tvnA 293 26.00 c.1.8.3 119360 1uzmA 247 26.31 c.2.1.2 119811 2yvaA 196 26.50 2c2nA 339 27.83 1oxwA 373 28.02 c.19.1.3 87539 1ic6A 279 28.26 c.41.1.1 62257 2d4wA 504 28.58 1eny 268 29.07 2csuA 457 29.42 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2gf3A 389 29.55 c.3.1.2,d.16.1.3 135070,135071 1tk9A 188 30.11 c.80.1.3 107082 2f9sA 151 30.26 c.47.1.10 133168 1uayA 242 31.64 c.2.1.2 88390 2gt1A 326 32.33 1xu9A 286 32.35 c.2.1.2 116052 1edtA 271 32.48 c.1.8.5 28993 1ybdA 239 32.87 c.73.1.3 122884 1ir6A 424 32.90 c.107.1.2 71342 1f3lA 321 33.67 c.66.1.6 59630 2masA 314 34.05 c.70.1.1 34810 1ne7A 289 34.29 c.124.1.1 91833 1e5kA 201 34.40 c.68.1.8 34578 2h7mA 269 34.41 c.2.1.2 136219 1y5mA 276 35.01 c.2.1.2 122645 1nhsA 447 35.72 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 3bhnA 236 35.81 2ffeA 311 35.97 c.143.1.1 133381 1w3iA 293 36.23 c.1.10.1 109152 2i49A 429 36.84 1vicA 262 37.07 c.68.1.13 100756 2f5xA 312 37.25 1iz0A 302 37.55 b.35.1.2,c.2.1.1 83821,83822 2ae2A 260 38.58 c.2.1.2 29945 1bd0A 388 38.67 b.49.2.2,c.1.6.1 26480,28642 1ceoA 343 38.97 c.1.8.3 28808 2bneA 241 39.03 c.73.1.3 128824 2ywdA 191 40.36 1c93A 265 40.55 c.1.8.5 28998 3c86A 328 40.67 2dkfA 431 40.70 2atsA 292 40.81 c.1.10.1 127306 2ef5A 290 43.15 2pocA 367 44.03 2eixA 243 44.03 1chd 203 44.71 1ryiA 382 44.88 c.3.1.2,d.16.1.3 118813,118814 1lqtA 456 45.06 c.3.1.1,c.4.1.1 74198,74199 2fexA 188 45.07 c.23.16.2 133354 3cnqS 266 45.32 1rxyA 253 45.47 c.56.2.1 98065 2ax4A 198 45.62 1yoeA 322 46.57 2z8xA 617 46.81 3cdxA 354 47.97 3ca8A 266 48.48 2ew8A 249 48.50 c.2.1.2 132447 2qgnA 322 48.79 1qnrA 344 48.91 c.1.8.3 28834 2dtxA 264 48.96 1fjhA 257 49.03 c.2.1.2 29870 1el5A 389 49.06 c.3.1.2,d.16.1.3 30369,37937 1l5xA 280 49.51 c.106.1.1 77718 2o6lA 170 49.96 2c07A 285 50.26 c.2.1.2 129577 2c1xA 456 50.37 2f46A 156 50.58 2h1yA 321 50.78 2ac7A 235 51.77 c.56.2.1 126543 1bu6O 501 53.41 c.55.1.4,c.55.1.4 33499,33500 1e6wA 260 53.67 c.2.1.2 59326 1gsjA 258 54.01 c.73.1.2 70397 1udcA 338 54.09 c.2.1.2 29785 3b9gA 328 54.47 2dknA 255 55.76 2bsxA 253 56.04 c.56.2.1 129128 1nhpA 447 56.21 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1y8cA 246 56.49 c.66.1.43 116563 1xahA 354 56.55 1eziA 228 56.76 c.68.1.13 34512 1x6vA 630 56.81 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pr7A 137 57.81 1x1tA 260 57.98 c.2.1.2 121597 2hqsC 118 59.19 d.79.7.1 136666 1htwA 158 59.23 c.37.1.18 71083 3c8uA 208 59.39 1h5qA 265 59.58 c.2.1.2 60643 1nffA 260 59.72 c.2.1.2 80457 1w4xA 542 60.12 c.3.1.5,c.3.1.5 109171,109172 1o58A 303 60.12 c.79.1.1 92491 1gegA 256 60.34 c.2.1.2 29888 2p4hX 322 60.40 1odkA 235 60.70 c.56.2.1 86863 1wmaA 276 60.73 c.2.1.2 121042 1kngA 156 61.22 c.47.1.10 72777 1e6uA 321 61.55 c.2.1.2 29805 1o7jA 327 61.65 c.88.1.1 81140 1z15A 344 61.77 2o23A 265 61.88 c.2.1.2 138884 1vl8A 267 62.01 c.2.1.2 108733 7a3hA 303 62.18 c.1.8.3 28817 1ydeA 270 62.43 c.2.1.2 122980 1zmtA 254 62.74 c.2.1.2 125363 1bdbA 277 63.20 c.2.1.2 29874 1eiwA 111 63.50 c.23.3.1 31130 1shuX 182 63.54 c.62.1.1 98882 1l9cA 389 63.80 c.3.1.2,d.16.1.3 77815,77816 3c3pA 210 64.73 1i52A 236 65.52 c.68.1.13 61767 1tcvA 287 65.65 2d1yA 256 65.86 c.2.1.2 131151 1geeA 261 66.25 c.2.1.2 90509 1nijA 318 66.26 c.37.1.10,d.237.1.1 85741,85742 1fmcA 255 66.68 c.2.1.2 29856 3c1oA 321 66.75 1p0fA 373 66.86 b.35.1.2,c.2.1.1 87642,87643 1hgxA 183 66.88 c.61.1.1 34027 1vhwA 253 67.36 c.56.2.1 100706 2iyaA 424 67.59 2pd6A 264 68.46 1thmA 279 68.74 c.41.1.1 32544 2pwaA 279 68.95 c.41.1.1 139762 2iyfA 430 69.14 1bdb 277 69.72 1oi7A 288 69.76 c.2.1.8,c.23.4.1 87049,87050 2e5fA 325 69.77 1l5oA 356 71.58 c.39.1.1 77711 1k2wA 256 71.63 c.2.1.2 90927 1yb1A 272 72.28 c.2.1.2 116599 2b6nA 278 72.31 1xrjA 261 72.42 c.37.1.6 122256 3c3dA 311 72.56 2hcyA 347 72.75 2phjA 251 73.38 2bgxA 261 75.71 a.20.1.1,d.118.1.1 128504,128505 2jahA 247 76.45 1g5cA 170 77.32 c.53.2.1 60264 1qsgA 265 77.37 c.2.1.2 29935 2eihA 343 77.53 1ukzA 203 77.99 c.37.1.1 31840 1k0fA 277 78.05 c.92.2.2 71974 2q7dA 346 78.29 2pzmA 330 78.43 1ijbA 202 78.48 c.62.1.1 71229 1je0A 236 78.52 c.56.2.1 66581 1qgoA 264 78.56 c.92.1.2 35596 1gl6A 436 78.93 c.37.1.11 70259 1hxhA 253 79.33 c.2.1.2 76725 1zemA 262 79.86 c.2.1.2 124984 2a1fA 247 80.58 c.73.1.3 125991 2v03A 303 80.92 1wx1A 335 82.53 1q6zA 528 82.84 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2qj8A 332 83.02 2z1mA 345 83.27 1pwxA 254 83.40 c.2.1.2 95262 3beoA 375 83.58 1v2dA 381 83.70 c.67.1.1 108281 1qwjA 229 83.78 c.68.1.13 96478 2gouA 365 83.95 1i2cA 404 84.37 c.2.1.2 83666 1a7jA 290 84.51 c.37.1.6 31952 2ppvA 332 84.85 2cfcA 250 85.31 2egxA 269 85.94 2ojpA 292 86.01 1v7cA 351 86.32 c.79.1.1 100446 2pnfA 248 86.47 1r61A 207 86.87 c.8.8.1 97138 1ri5A 298 87.17 c.66.1.34 97502 2jhfA 374 87.35 b.35.1.2,c.2.1.1 138314,138315 1pl8A 356 87.72 b.35.1.2,c.2.1.1 94878,94879 1zmoA 244 88.14 1e0cA 271 89.01 c.46.1.2,c.46.1.2 32717,32718 3cjpA 272 89.24 2c40A 312 89.68 1wraA 308 89.90 d.157.1.8 121190