# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 1.85e-21 c.69.1.25 77772 1vlqA 337 2.05e-20 c.69.1.25 108848 2jbwA 386 4.10e-20 1b6g 310 4.35e-20 1u4nA 310 5.41e-20 c.69.1.2 113021 1b6gA 310 8.37e-20 c.69.1.8 34661 2hdwA 367 1.13e-19 1wm1A 317 1.40e-19 c.69.1.7 109405 1u2eA 289 1.60e-19 1lzlA 323 1.71e-19 c.69.1.2 78306 1jkmA 358 2.01e-19 c.69.1.2 34633 1hlgA 371 2.24e-19 c.69.1.6 34656 2hu5A 582 2.41e-19 b.69.7.2,c.69.1.33 136763,136764 2uz0A 263 2.61e-19 2b61A 377 2.68e-19 2qm0A 275 2.76e-19 1zi8A 236 2.76e-19 2og1A 286 2.76e-19 1k8qA 377 2.81e-19 c.69.1.6 72177 3bdiA 207 3.34e-19 2r11A 306 3.44e-19 1c4xA 285 3.60e-19 c.69.1.10 34684 1bn7A 294 3.81e-19 c.69.1.8 34677 1q0rA 298 3.93e-19 c.69.1.28 95508 1zd3A 555 4.00e-19 c.108.1.2,c.69.1.11 124930,124931 2z3zA 706 4.23e-19 3b5eA 223 4.42e-19 2pujA 286 4.64e-19 2o2gA 223 4.88e-19 1din 236 5.14e-19 1jfrA 262 5.48e-19 c.69.1.16 34724 2b20A 403 5.75e-19 b.1.18.20,c.69.1.2 127685,127686 1orvA 728 7.77e-19 b.70.3.1,c.69.1.24 87354,87355 2pl5A 366 8.68e-19 2puhA 286 8.75e-19 1azwA 313 8.81e-19 c.69.1.7 34658 1vkhA 273 8.96e-19 c.69.1.32 108662 2rhwA 283 9.16e-19 2o7rA 338 1.05e-18 2hm7A 310 1.06e-18 1jjiA 311 1.20e-18 c.69.1.2 66766 2fukA 220 1.23e-18 1f0nA 285 1.25e-18 c.69.1.3 34636 3bxpA 277 1.31e-18 1uk8A 282 1.33e-18 c.69.1.10 107907 1zoiA 276 1.35e-18 2d5lA 706 1.45e-18 1auoA 218 1.53e-18 c.69.1.14 34716 1fj2A 232 1.64e-18 c.69.1.14 34720 1h2wA 710 1.73e-18 b.69.7.1,c.69.1.4 76596,76597 2i3dA 249 1.82e-18 1mtzA 293 1.87e-18 c.69.1.7 79467 2fx5A 258 1.89e-18 1jjfA 268 1.99e-18 c.69.1.2 66765 2r8bA 251 2.04e-18 1r88A 280 2.41e-18 c.69.1.3 97219 1wb4A 297 2.44e-18 c.69.1.2 120827 1dqzA 280 2.45e-18 c.69.1.3 34638 2veoA 441 2.81e-18 1womA 271 3.11e-18 2e3jA 356 3.24e-18 1xqwA 293 3.27e-18 2ocgA 254 3.31e-18 1j1iA 296 3.56e-18 c.69.1.10 83977 1ufoA 238 3.64e-18 c.69.1.27 99344 1a8qA 274 3.67e-18 c.69.1.12 34702 1pv1A 299 4.22e-18 c.69.1.34 111639 2qruA 274 4.33e-18 3c8dA 403 4.79e-18 2qmqA 286 6.61e-18 3bwxA 285 6.68e-18 1va4A 279 6.91e-18 c.69.1.12 108458 1brt 277 7.27e-18 2cjpA 328 7.80e-18 1mj5A 302 8.05e-18 c.69.1.8 91285 2o2iA 300 9.05e-18 2bklA 695 9.30e-18 1xklA 273 9.68e-18 c.69.1.20 115410 1imjA 210 1.00e-17 c.69.1.23 71246 3c5vA 316 1.09e-17 2qvbA 297 1.13e-17 3bf7A 255 1.26e-17 1hkhA 279 1.27e-17 c.69.1.12 90628 1mpxA 615 1.42e-17 b.18.1.13,c.69.1.21 85041,85042 1brtA 277 1.49e-17 c.69.1.12 34699 1a8sA 273 1.56e-17 c.69.1.12 34710 1qj4A 257 1.81e-17 c.69.1.20 34796 1o6gA 710 1.88e-17 b.69.7.1,c.69.1.4 81087,81088 1ehyA 294 2.97e-17 c.69.1.11 34693 1y37A 304 3.44e-17 2yysA 286 3.55e-17 2gzsA 278 4.95e-17 1r1dA 247 5.79e-17 c.69.1.29 96813 2psdA 318 6.11e-17 1qo7A 394 6.98e-17 c.69.1.11 34697 1lnsA 763 7.16e-17 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1tqhA 247 7.70e-17 c.69.1.29 107225 1m33A 258 9.17e-17 c.69.1.26 78514 2pblA 262 9.79e-17 1yr2A 741 1.63e-16 1ju3A 583 1.73e-16 b.18.1.13,c.69.1.21 67300,67301 2hfkA 319 4.72e-16 1tcaA 317 1.08e-15 c.69.1.17 34726 1ycdA 243 1.92e-15 1qe3A 489 2.14e-15 c.69.1.1 34630 2ogtA 498 2.38e-15 1pjaA 302 2.97e-15 c.69.1.13 94758 1qlwA 328 3.26e-15 c.69.1.15 34722 2qjwA 176 6.51e-15 1cvlA 319 9.64e-15 c.69.1.18 34786 2rauA 354 1.45e-14 2q0xA 335 1.50e-14 1r3dA 264 1.59e-14 c.69.1.35 111680 1ukcA 522 1.72e-14 c.69.1.17 107911 1ea5A 537 2.79e-14 c.69.1.1 34592 1p0iA 529 3.54e-14 c.69.1.1 93867 1tca 317 4.98e-14 1mnaA 298 5.16e-14 c.69.1.22 79322 3bdvA 191 5.34e-14 1ei9A 279 6.90e-14 c.69.1.13 34713 1llfA 534 9.43e-14 c.69.1.17 78094 1thgA 544 9.95e-14 c.69.1.17 34763 1ispA 181 1.50e-13 c.69.1.18 76778 1ys1X 320 3.30e-13 2qs9A 194 4.68e-13 3bixA 574 4.81e-13 2h7cA 542 7.07e-13 c.69.1.1 136207 2bceA 585 1.21e-12 c.69.1.1 34625 1cvl 319 2.15e-12 1jmkC 230 2.27e-12 c.69.1.22 71747 1hplA 449 2.59e-12 b.12.1.2,c.69.1.19 23639,34787 2bce 581 2.84e-12 1bu8A 452 2.87e-12 b.12.1.2,c.69.1.19 23647,34795 1thg 544 3.88e-12 1uxoA 192 4.35e-12 c.69.1.31 108121 2px6A 316 1.27e-11 2cb9A 244 2.94e-11 1thtA 305 2.24e-10 c.69.1.13 34711 1ivyA 452 7.04e-10 c.69.1.5 34654 1ac5A 483 5.98e-07 c.69.1.5 34653 2dsnA 387 7.59e-07 1cex 214 4.50e-06 1ku0A 388 5.31e-06 c.69.1.18 72994 2z5gA 387 7.41e-06 1uwcA 261 1.16e-05 c.69.1.17 100101 2d80A 318 3.50e-05 1tib 269 3.78e-05 1whsA 255 4.06e-05 c.69.1.5 34649 1tibA 269 0.000171 c.69.1.17 34738 1g66A 207 0.000175 c.69.1.30 31329 1cexA 214 0.000477 c.69.1.30 31285 2czqA 205 0.000625 2d81A 318 0.000788 3tglA 269 0.001542 c.69.1.17 34733 2oryA 346 0.005316 1edgA 380 0.1902 c.1.8.3 28807 1whsB 153 0.3907 2q7xA 326 3.339 2qt1A 207 3.414 1f0kA 364 3.735 c.87.1.2 35465 1moq 368 3.978 1ooeA 236 4.184 c.2.1.2 87196 2jepA 395 4.566 2gruA 368 6.202 1o9gA 250 6.315 c.66.1.29 86692 2ppwA 216 6.494 2df8A 325 6.512 1vf8A 377 8.717 c.1.8.5,d.26.3.1 120029,120030 1v4vA 376 8.935 c.87.1.3 100313 2nm0A 253 9.090 2qtwB 546 9.376 1rrmA 386 10.20 e.22.1.2 105081 2p91A 285 10.27 1iirA 415 10.41 c.87.1.5 62453 1kpgA 287 11.61 c.66.1.18 68735 2yvuA 186 11.80 3crrA 323 12.25 2ze7A 253 12.40 3cjpA 272 14.91 1oxwA 373 15.03 c.19.1.3 87539 1xgkA 352 15.23 c.2.1.2 115286 2c2nA 339 15.89 3b55A 451 16.16 2d4wA 504 16.24 2vc7A 314 16.29 1e6uA 321 17.40 c.2.1.2 29805 2pocA 367 17.44 1rxyA 253 18.00 c.56.2.1 98065 1tk9A 188 18.02 c.80.1.3 107082 2cb0A 333 18.05 1p3dA 475 18.74 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1h1nA 305 18.74 c.1.8.3 70855 2bkaA 242 18.98 c.2.1.2 128666 2j3hA 345 19.05 2qmoA 220 19.21 1eny 268 19.98 2i49A 429 20.06 1zc6A 305 20.73 c.55.1.5,c.55.1.5 124888,124889 2ef5A 290 21.12 2i2wA 212 21.33 2gasA 307 21.78 2f5xA 312 22.25 3c86A 328 23.90 2bcoA 350 24.29 c.56.5.7 128302 2jfgA 445 24.57 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2h7mA 269 24.76 c.2.1.2 136219 1pswA 348 24.78 c.87.1.7 88287 1w3iA 293 24.90 c.1.10.1 109152 2c1xA 456 25.55 2f9sA 151 25.88 c.47.1.10 133168 1hdcA 253 26.13 c.2.1.2 29862 1bf6A 291 26.56 c.1.9.3 29065 1bu6O 501 26.75 c.55.1.4,c.55.1.4 33499,33500 4uagA 437 26.77 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2z8xA 617 27.05 1uzmA 247 27.20 c.2.1.2 119811 2o2zA 323 27.39 1tvnA 293 27.72 c.1.8.3 119360 2gt1A 326 28.40 1e8cA 498 28.97 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2dm6A 333 29.37 b.35.1.2,c.2.1.1 131567,131568 1gsjA 258 30.47 c.73.1.2 70397 2yvaA 196 30.78 3c4vA 426 31.48 1kngA 156 31.80 c.47.1.10 72777 2pk3A 321 32.24 2abwA 227 32.56 c.23.16.1 126535 2gf3A 389 32.84 c.3.1.2,d.16.1.3 135070,135071 2deoA 230 33.10 1f2dA 341 33.93 c.79.1.1 35298 2iw1A 374 34.99 c.87.1.8 137738 2ac7A 235 35.51 c.56.2.1 126543 1uayA 242 35.63 c.2.1.2 88390 1c93A 265 36.88 c.1.8.5 28998 3bhnA 236 37.06 2ax4A 198 37.45 3cdxA 354 37.55 2p4hX 322 37.68 1l5xA 280 38.95 c.106.1.1 77718 3c3jA 384 39.75 2a3nA 355 39.89 1chd 203 40.03 2atsA 292 40.64 c.1.10.1 127306 1bd0A 388 40.86 b.49.2.2,c.1.6.1 26480,28642 1uluA 261 41.19 c.2.1.2 113292 1e5kA 201 41.25 c.68.1.8 34578 1nhsA 447 42.10 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2f46A 156 42.14 2e18A 257 42.75 2bsxA 253 43.52 c.56.2.1 129128 2qgnA 322 43.71 1w6uA 302 44.00 c.2.1.2 114288 1i52A 236 44.28 c.68.1.13 61767 1eceA 358 44.87 c.1.8.3 28813 1f3lA 321 45.05 c.66.1.6 59630 1odkA 235 45.72 c.56.2.1 86863 1vicA 262 46.48 c.68.1.13 100756 1o5zA 442 46.93 c.59.1.2,c.72.2.2 92530,92531 2i87A 364 47.31 2bgxA 261 47.52 a.20.1.1,d.118.1.1 128504,128505 1h5qA 265 47.60 c.2.1.2 60643 2dvtA 327 47.80 c.1.9.15 131793 1lqtA 456 47.85 c.3.1.1,c.4.1.1 74198,74199 2pw6A 271 47.91 1b5pA 385 49.58 c.67.1.1 90403 1zmtA 254 49.97 c.2.1.2 125363 2z1mA 345 51.12 1vljA 407 51.61 e.22.1.2 108832 1ryiA 382 51.69 c.3.1.2,d.16.1.3 118813,118814 2hqsC 118 52.27 d.79.7.1 136666 2dplA 308 53.13 3c8uA 208 53.18 2eixA 243 53.29 1o58A 303 53.78 c.79.1.1 92491 1ir6A 424 53.78 c.107.1.2 71342 2h1yA 321 54.06 2iyaA 424 54.32 2ae2A 260 54.72 c.2.1.2 29945 1y5mA 276 55.24 c.2.1.2 122645 2c07A 285 55.36 c.2.1.2 129577 3ca8A 266 55.63 2egxA 269 55.79 2q7dA 346 56.20 1qhxA 178 56.32 c.37.1.3 31936 1ceoA 343 56.35 c.1.8.3 28808 1yoeA 322 58.31 2amlA 373 58.59 2masA 314 58.97 c.70.1.1 34810 1e6wA 260 58.99 c.2.1.2 59326 1nhpA 447 60.70 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1nffA 260 60.74 c.2.1.2 80457 1eiwA 111 60.99 c.23.3.1 31130 1v98A 140 61.49 2o6lA 170 61.68 1a7jA 290 61.95 c.37.1.6 31952 1oi7A 288 62.65 c.2.1.8,c.23.4.1 87049,87050 1ybdA 239 62.76 c.73.1.3 122884 2bneA 241 63.49 c.73.1.3 128824 1xu9A 286 64.23 c.2.1.2 116052 1z15A 344 65.05 1aroL 151 65.11 d.118.1.1 41063 1x1tA 260 65.81 c.2.1.2 121597 2dkfA 431 66.52 2bmwA 304 66.72 b.43.4.2,c.25.1.1 128815,128816 1vhwA 253 66.76 c.56.2.1 100706 2pqmA 343 67.51 2v03A 303 67.91 2gouA 365 68.00 1l3iA 192 69.00 c.66.1.22 77676 1wraA 308 69.08 d.157.1.8 121190 1yd9A 193 69.96 c.50.1.2 122976 1udcA 338 70.25 c.2.1.2 29785 1byi 224 70.27 2pezA 179 70.51 2pzmA 330 71.04 3c3pA 210 71.51 1ydeA 270 72.91 c.2.1.2 122980 1gegA 256 73.57 c.2.1.2 29888 1ne7A 289 73.88 c.124.1.1 91833 3canA 182 73.88 2ywdA 191 75.05 1je0A 236 75.25 c.56.2.1 66581 1v7zA 260 75.30 c.125.1.1 100488 1i19A 561 75.57 d.58.32.3,d.145.1.1 61522,61523 2dknA 255 75.87 1mf7A 194 76.18 c.62.1.1 84937 1eziA 228 76.40 c.68.1.13 34512 1k0fA 277 76.51 c.92.2.2 71974 1y8cA 246 76.93 c.66.1.43 116563 3co4A 312 77.05 1x6vA 630 77.41 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1qsgA 265 77.97 c.2.1.2 29935 1qwjA 229 78.06 c.68.1.13 96478 2ew8A 249 78.67 c.2.1.2 132447 1o1xA 155 78.88 c.121.1.1 86553 2pz0A 252 79.14 2r00A 336 80.46 1mlaA 309 80.66 c.19.1.1,d.58.23.1 31031,39383 1zemA 262 80.99 c.2.1.2 124984 3cnqS 266 81.27 2qm1A 326 81.51 3beoA 375 81.83 1thmA 279 81.88 c.41.1.1 32544 2eg4A 230 81.90 1n3yA 198 83.13 c.62.1.1 79976 2pd6A 264 83.34 2fexA 188 83.36 c.23.16.2 133354 2am1A 454 83.88 1edtA 271 84.25 c.1.8.5 28993 2pc8A 400 84.26 2eavA 165 84.38 2yzkA 178 84.39 1usgA 346 84.91 c.93.1.1 99864 1zbqA 327 85.21 c.2.1.2 124862 7a3hA 303 85.33 c.1.8.3 28817 1oj7A 408 85.43 e.22.1.2 103971 2d1yA 256 85.99 c.2.1.2 131151 1mla 309 86.25 1fmcA 255 86.66 c.2.1.2 29856 2epjA 434 86.75 2dx6A 159 86.87 1a7j 290 87.89 2fqxA 318 88.04 2p5yA 311 88.76 2dvzA 314 88.84 1h1dA 221 88.87 c.66.1.1 83452 1ukzA 203 88.90 c.37.1.1 31840 1j0aA 325 88.92 c.79.1.1 83871 1bdbA 277 89.07 c.2.1.2 29874 2pr7A 137 89.21 1st9A 143 89.58 c.47.1.10 98987 2p3rA 510 89.60 c.55.1.4,c.55.1.4 139471,139472 1w4xA 542 89.80 c.3.1.5,c.3.1.5 109171,109172 2gh1A 301 89.97 c.66.1.49 135170