# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 1.48e-23 c.69.1.25 77772 1u4nA 310 1.01e-22 c.69.1.2 113021 1vlqA 337 1.53e-22 c.69.1.25 108848 1lzlA 323 2.77e-22 c.69.1.2 78306 1b6g 310 3.34e-22 2hdwA 367 3.51e-22 1b6gA 310 4.97e-22 c.69.1.8 34661 1jkmA 358 7.11e-22 c.69.1.2 34633 1wm1A 317 8.68e-22 c.69.1.7 109405 2jbwA 386 9.83e-22 2og1A 286 1.47e-21 2hm7A 310 1.57e-21 1u2eA 289 1.64e-21 2uz0A 263 1.97e-21 1hlgA 371 2.25e-21 c.69.1.6 34656 2qm0A 275 2.30e-21 1q0rA 298 2.86e-21 c.69.1.28 95508 1zi8A 236 2.93e-21 1orvA 728 3.08e-21 b.70.3.1,c.69.1.24 87354,87355 2r11A 306 3.09e-21 1jfrA 262 3.12e-21 c.69.1.16 34724 2rhwA 283 3.38e-21 2z3zA 706 3.53e-21 3bdiA 207 3.53e-21 2hu5A 582 3.57e-21 b.69.7.2,c.69.1.33 136763,136764 2pujA 286 3.69e-21 1c4xA 285 3.69e-21 c.69.1.10 34684 2puhA 286 4.51e-21 1jjiA 311 4.84e-21 c.69.1.2 66766 1k8qA 377 5.04e-21 c.69.1.6 72177 1din 236 5.08e-21 1bn7A 294 5.91e-21 c.69.1.8 34677 2o7rA 338 7.47e-21 3b5eA 223 7.89e-21 1azwA 313 8.18e-21 c.69.1.7 34658 2o2gA 223 8.83e-21 1zd3A 555 8.93e-21 c.108.1.2,c.69.1.11 124930,124931 1mtzA 293 9.11e-21 c.69.1.7 79467 1zoiA 276 9.14e-21 1uk8A 282 1.03e-20 c.69.1.10 107907 2b61A 377 1.13e-20 1xqwA 293 1.20e-20 2d5lA 706 1.29e-20 2e3jA 356 1.63e-20 2fx5A 258 1.70e-20 1h2wA 710 1.78e-20 b.69.7.1,c.69.1.4 76596,76597 2i3dA 249 1.85e-20 1womA 271 1.96e-20 2b20A 403 2.01e-20 b.1.18.20,c.69.1.2 127685,127686 2fukA 220 2.12e-20 2r8bA 251 2.26e-20 2ocgA 254 2.34e-20 2veoA 441 2.85e-20 3bxpA 277 3.06e-20 1vkhA 273 3.12e-20 c.69.1.32 108662 1auoA 218 3.15e-20 c.69.1.14 34716 1a8qA 274 3.33e-20 c.69.1.12 34702 1jjfA 268 3.63e-20 c.69.1.2 66765 1fj2A 232 3.82e-20 c.69.1.14 34720 3bwxA 285 3.87e-20 1f0nA 285 3.93e-20 c.69.1.3 34636 1brt 277 4.40e-20 1ufoA 238 4.41e-20 c.69.1.27 99344 2pl5A 366 4.70e-20 3bf7A 255 4.90e-20 1dqzA 280 6.48e-20 c.69.1.3 34638 1wb4A 297 6.55e-20 c.69.1.2 120827 1j1iA 296 6.82e-20 c.69.1.10 83977 1va4A 279 6.95e-20 c.69.1.12 108458 2qruA 274 8.65e-20 1xklA 273 9.21e-20 c.69.1.20 115410 1pv1A 299 9.52e-20 c.69.1.34 111639 2cjpA 328 1.04e-19 2qmqA 286 1.25e-19 1r88A 280 1.31e-19 c.69.1.3 97219 1brtA 277 1.35e-19 c.69.1.12 34699 2bklA 695 1.38e-19 1imjA 210 1.40e-19 c.69.1.23 71246 1a8sA 273 1.43e-19 c.69.1.12 34710 3c8dA 403 1.50e-19 2o2iA 300 2.30e-19 2yysA 286 2.33e-19 2qvbA 297 2.65e-19 1o6gA 710 2.91e-19 b.69.7.1,c.69.1.4 81087,81088 3c5vA 316 2.92e-19 1mj5A 302 3.19e-19 c.69.1.8 91285 1hkhA 279 4.21e-19 c.69.1.12 90628 1ehyA 294 4.31e-19 c.69.1.11 34693 1qj4A 257 4.40e-19 c.69.1.20 34796 1y37A 304 5.43e-19 1r1dA 247 7.23e-19 c.69.1.29 96813 1mpxA 615 7.28e-19 b.18.1.13,c.69.1.21 85041,85042 2psdA 318 8.83e-19 1m33A 258 1.25e-18 c.69.1.26 78514 1qo7A 394 1.61e-18 c.69.1.11 34697 1tqhA 247 1.78e-18 c.69.1.29 107225 1lnsA 763 2.04e-18 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2gzsA 278 2.30e-18 1ju3A 583 6.14e-18 b.18.1.13,c.69.1.21 67300,67301 1yr2A 741 6.34e-18 2pblA 262 7.85e-18 2hfkA 319 1.86e-17 1tcaA 317 4.38e-17 c.69.1.17 34726 1ycdA 243 4.49e-17 1qe3A 489 5.98e-17 c.69.1.1 34630 1pjaA 302 7.48e-17 c.69.1.13 94758 2ogtA 498 1.20e-16 1qlwA 328 1.53e-16 c.69.1.15 34722 1r3dA 264 3.27e-16 c.69.1.35 111680 2qjwA 176 3.38e-16 1cvlA 319 5.31e-16 c.69.1.18 34786 2rauA 354 6.64e-16 1ea5A 537 9.59e-16 c.69.1.1 34592 1ei9A 279 9.93e-16 c.69.1.13 34713 1p0iA 529 1.70e-15 c.69.1.1 93867 2q0xA 335 1.70e-15 1ukcA 522 1.92e-15 c.69.1.17 107911 1tca 317 2.75e-15 3bdvA 191 3.04e-15 1mnaA 298 3.09e-15 c.69.1.22 79322 1ispA 181 4.34e-15 c.69.1.18 76778 1llfA 534 6.55e-15 c.69.1.17 78094 1thgA 544 9.55e-15 c.69.1.17 34763 1ys1X 320 2.43e-14 3bixA 574 3.00e-14 2qs9A 194 3.65e-14 2h7cA 542 7.20e-14 c.69.1.1 136207 2bceA 585 1.12e-13 c.69.1.1 34625 1uxoA 192 2.11e-13 c.69.1.31 108121 1hplA 449 2.88e-13 b.12.1.2,c.69.1.19 23639,34787 2bce 581 3.14e-13 1bu8A 452 3.25e-13 b.12.1.2,c.69.1.19 23647,34795 1cvl 319 3.41e-13 1thg 544 4.80e-13 1jmkC 230 7.10e-13 c.69.1.22 71747 2px6A 316 2.50e-12 2cb9A 244 8.59e-12 1thtA 305 2.53e-11 c.69.1.13 34711 1ivyA 452 1.38e-10 c.69.1.5 34654 2dsnA 387 1.18e-07 1ac5A 483 3.51e-07 c.69.1.5 34653 2z5gA 387 3.45e-06 1ku0A 388 8.32e-06 c.69.1.18 72994 1cex 214 1.09e-05 1uwcA 261 1.84e-05 c.69.1.17 100101 2d80A 318 2.91e-05 1tib 269 3.28e-05 1whsA 255 3.90e-05 c.69.1.5 34649 1tibA 269 0.000244 c.69.1.17 34738 1g66A 207 0.000248 c.69.1.30 31329 2d81A 318 0.000817 1cexA 214 0.001212 c.69.1.30 31285 2czqA 205 0.001217 3tglA 269 0.003716 c.69.1.17 34733 2oryA 346 0.006700 1whsB 153 0.1228 1edgA 380 0.4770 c.1.8.3 28807 1f0kA 364 1.525 c.87.1.2 35465 1iirA 415 1.930 c.87.1.5 62453 2ppwA 216 3.554 1b5pA 385 3.822 c.67.1.1 90403 2q7xA 326 4.227 1tk9A 188 4.397 c.80.1.3 107082 1ooeA 236 5.204 c.2.1.2 87196 1moq 368 6.369 2ze7A 253 6.799 2z8xA 617 6.928 1o9gA 250 7.432 c.66.1.29 86692 2qt1A 207 8.556 1pswA 348 8.648 c.87.1.7 88287 3cjpA 272 9.468 1w3iA 293 10.54 c.1.10.1 109152 1zc6A 305 10.72 c.55.1.5,c.55.1.5 124888,124889 2df8A 325 11.43 2f5xA 312 12.35 2iyaA 424 13.22 3crrA 323 13.26 2yvaA 196 13.53 2c2nA 339 13.63 2yvuA 186 14.08 2p91A 285 14.23 1o4sA 389 14.83 c.67.1.1 86620 2pocA 367 15.29 2i49A 429 15.62 2o2zA 323 15.64 2bkaA 242 15.76 c.2.1.2 128666 1v4vA 376 16.46 c.87.1.3 100313 2gasA 307 16.67 2gruA 368 16.76 1oxwA 373 17.37 c.19.1.3 87539 1hdcA 253 17.61 c.2.1.2 29862 2fqxA 318 18.08 2qmoA 220 18.21 1gsjA 258 18.98 c.73.1.2 70397 1eny 268 19.09 1rrmA 386 19.52 e.22.1.2 105081 1vf8A 377 20.07 c.1.8.5,d.26.3.1 120029,120030 2ywdA 191 20.21 2deoA 230 20.39 2dtxA 264 20.58 3b55A 451 22.20 1tvnA 293 22.25 c.1.8.3 119360 3bhnA 236 22.40 1p3dA 475 22.59 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1fmcA 255 22.96 c.2.1.2 29856 1htwA 158 23.04 c.37.1.18 71083 1byi 224 23.07 1mla 309 23.81 2vc7A 314 24.12 2ppvA 332 25.74 2ae2A 260 25.86 c.2.1.2 29945 2cb0A 333 26.07 2i2wA 212 27.43 1thmA 279 27.77 c.41.1.1 32544 2h7mA 269 28.63 c.2.1.2 136219 1e6uA 321 28.85 c.2.1.2 29805 2amlA 373 30.42 2hqsC 118 30.75 d.79.7.1 136666 1j32A 388 31.47 c.67.1.1 77067 2eihA 343 32.03 1eziA 228 32.13 c.68.1.13 34512 1uzmA 247 32.18 c.2.1.2 119811 1gvfA 286 32.24 c.1.10.2 70599 2q7dA 346 32.24 2dvzA 314 32.28 2q5cA 196 32.36 2nm0A 253 32.49 2d4wA 504 32.86 3c4vA 426 32.96 1bf6A 291 33.17 c.1.9.3 29065 1bu6O 501 34.34 c.55.1.4,c.55.1.4 33499,33500 1vhwA 253 34.35 c.56.2.1 100706 2ac7A 235 34.62 c.56.2.1 126543 1kpgA 287 34.69 c.66.1.18 68735 2j3hA 345 34.80 1mlaA 309 35.49 c.19.1.1,d.58.23.1 31031,39383 2gt1A 326 35.51 2qgnA 322 36.18 1g5cA 170 36.52 c.53.2.1 60264 3c1oA 321 37.51 1hgxA 183 38.61 c.61.1.1 34027 1qwjA 229 38.97 c.68.1.13 96478 1k0fA 277 39.26 c.92.2.2 71974 1xu9A 286 39.45 c.2.1.2 116052 1y8cA 246 40.05 c.66.1.43 116563 3c3jA 384 40.62 1w6uA 302 41.25 c.2.1.2 114288 2f46A 156 41.89 4uagA 437 42.00 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1rxyA 253 42.16 c.56.2.1 98065 1o58A 303 42.31 c.79.1.1 92491 2pk3A 321 42.47 2bsxA 253 43.30 c.56.2.1 129128 1xi9A 406 43.52 c.67.1.1 115355 1a7jA 290 43.93 c.37.1.6 31952 2ax4A 198 44.23 2dplA 308 44.38 2jahA 247 45.29 3canA 182 45.47 2qtwB 546 45.48 2csuA 457 45.71 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1zbqA 327 45.96 c.2.1.2 124862 1y5mA 276 46.29 c.2.1.2 122645 2e18A 257 46.38 2a3nA 355 46.40 2egxA 269 46.40 1nffA 260 46.57 c.2.1.2 80457 1ryiA 382 47.13 c.3.1.2,d.16.1.3 118813,118814 2ew8A 249 47.31 c.2.1.2 132447 2ffeA 311 47.57 c.143.1.1 133381 1l3iA 192 48.17 c.66.1.22 77676 2jfgA 445 49.28 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1ceo 343 50.39 1ceoA 343 51.54 c.1.8.3 28808 1odkA 235 51.85 c.56.2.1 86863 1usgA 346 51.95 c.93.1.1 99864 2p6pA 384 52.57 3c3pA 210 52.66 2dkfA 431 52.70 2jepA 395 53.62 1xgkA 352 53.97 c.2.1.2 115286 2gf3A 389 54.00 c.3.1.2,d.16.1.3 135070,135071 2f9sA 151 54.41 c.47.1.10 133168 2c1xA 456 54.47 2dm6A 333 55.00 b.35.1.2,c.2.1.1 131567,131568 2epjA 434 55.09 1h1nA 305 55.13 c.1.8.3 70855 1ukzA 203 55.14 c.37.1.1 31840 2douA 376 55.39 1uluA 261 55.49 c.2.1.2 113292 3c86A 328 55.59 1yb4A 295 55.74 2c95A 196 56.69 1f3lA 321 57.10 c.66.1.6 59630 1bdbA 277 57.11 c.2.1.2 29874 1edtA 271 57.26 c.1.8.5 28993 2p5yA 311 57.28 1v98A 140 57.74 1wx1A 335 58.04 1v7zA 260 58.24 c.125.1.1 100488 2masA 314 58.54 c.70.1.1 34810 2pzmA 330 59.66 2yvdA 431 59.73 2culA 232 60.23 c.3.1.7 130813 1zmoA 244 60.46 1gd0A 122 60.64 d.80.1.3 39834 1zemA 262 60.77 c.2.1.2 124984 1xw8A 252 61.25 c.6.2.5 116111 2r6r1 338 62.37 1y44A 320 62.48 d.157.1.7 122608 1e5kA 201 63.59 c.68.1.8 34578 1z15A 344 63.84 2gs8A 317 63.89 2h1yA 321 64.15 2ef5A 290 64.18 1o1xA 155 65.67 c.121.1.1 86553 1gegA 256 66.26 c.2.1.2 29888 2g29A 417 67.33 2ew2A 316 68.38 1el5A 389 69.71 c.3.1.2,d.16.1.3 30369,37937 1qsgA 265 69.78 c.2.1.2 29935 2qm1A 326 70.22 1ymgA 263 70.37 1x1tA 260 70.54 c.2.1.2 121597 2ioyA 283 71.38 1geeA 261 72.06 c.2.1.2 90509 1qhxA 178 72.16 c.37.1.3 31936 2o23A 265 72.47 c.2.1.2 138884 1kngA 156 72.82 c.47.1.10 72777 1hxhA 253 72.89 c.2.1.2 76725 2bs3A 656 72.91 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2b1kA 168 73.09 1k2wA 256 73.54 c.2.1.2 90927 1x6vA 630 73.75 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2d1yA 256 74.12 c.2.1.2 131151 1jflA 228 74.41 c.78.2.1,c.78.2.1 71656,71657 1bdb 277 74.46 1ve1A 304 74.60 c.79.1.1 120007 1c93A 265 74.70 c.1.8.5 28998 1chd 203 76.27 1wmaA 276 76.31 c.2.1.2 121042 1fjhA 257 76.52 c.2.1.2 29870 1xg5A 279 77.03 c.2.1.2 115277 1z06A 189 77.15 c.37.1.8 124301 1v7cA 351 77.34 c.79.1.1 100446 2h3gX 268 77.44 1udcA 338 77.77 c.2.1.2 29785 1zmaA 118 78.28 c.47.1.1 125354 1mf7A 194 78.33 c.62.1.1 84937 1jx6A 342 78.45 c.93.1.1 67406 2pd6A 264 78.47 1vicA 262 78.74 c.68.1.13 100756 1je0A 236 79.51 c.56.2.1 66581 2dknA 255 80.99 1ja9A 274 81.22 c.2.1.2 62817 2r6jA 318 82.14 1v6tA 255 82.89 c.6.2.5 113550 2bgkA 278 83.23 c.2.1.2 128480 1zx0A 236 83.37 c.66.1.16 125757 2qpqA 301 83.77 2eaxA 164 83.89 8abp 306 83.94 2cuyA 305 84.48 2pezA 179 84.84 1hl2A 297 84.99 c.1.10.1 83581 1oapA 109 85.66 d.79.7.1 92706 1oj7A 408 85.66 e.22.1.2 103971 2iiiA 135 86.84 2iyfA 430 87.03 2cksA 306 87.35 1tcvA 287 89.12 1ydeA 270 89.31 c.2.1.2 122980 2z1mA 345 89.82