# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 4.03e-24 c.69.1.25 77772 1vlqA 337 2.29e-23 c.69.1.25 108848 1u4nA 310 4.23e-23 c.69.1.2 113021 1b6g 310 6.62e-23 2jbwA 386 1.04e-22 1lzlA 323 1.20e-22 c.69.1.2 78306 1b6gA 310 1.34e-22 c.69.1.8 34661 1zi8A 236 2.77e-22 1wm1A 317 2.94e-22 c.69.1.7 109405 1jkmA 358 3.19e-22 c.69.1.2 34633 1u2eA 289 3.95e-22 2qm0A 275 3.99e-22 2hdwA 367 4.38e-22 2b61A 377 4.54e-22 1din 236 5.11e-22 3b5eA 223 5.12e-22 2og1A 286 6.57e-22 2z3zA 706 8.91e-22 1bn7A 294 8.99e-22 c.69.1.8 34677 2uz0A 263 9.05e-22 2b20A 403 9.33e-22 b.1.18.20,c.69.1.2 127685,127686 1jfrA 262 9.47e-22 c.69.1.16 34724 2r11A 306 1.10e-21 2hu5A 582 1.11e-21 b.69.7.2,c.69.1.33 136763,136764 1q0rA 298 1.15e-21 c.69.1.28 95508 2pujA 286 1.24e-21 1hlgA 371 1.34e-21 c.69.1.6 34656 1zd3A 555 1.36e-21 c.108.1.2,c.69.1.11 124930,124931 2o2gA 223 1.41e-21 2hm7A 310 1.63e-21 1c4xA 285 1.74e-21 c.69.1.10 34684 1jjiA 311 1.78e-21 c.69.1.2 66766 3bdiA 207 1.80e-21 2o7rA 338 1.82e-21 1orvA 728 1.99e-21 b.70.3.1,c.69.1.24 87354,87355 2rhwA 283 2.20e-21 1fj2A 232 2.21e-21 c.69.1.14 34720 1k8qA 377 2.25e-21 c.69.1.6 72177 2fukA 220 2.49e-21 1vkhA 273 2.77e-21 c.69.1.32 108662 2puhA 286 3.08e-21 1azwA 313 3.18e-21 c.69.1.7 34658 2d5lA 706 3.45e-21 2fx5A 258 3.54e-21 2r8bA 251 3.61e-21 1zoiA 276 3.69e-21 1uk8A 282 4.46e-21 c.69.1.10 107907 2veoA 441 4.55e-21 3bxpA 277 4.77e-21 1dqzA 280 5.09e-21 c.69.1.3 34638 1auoA 218 5.61e-21 c.69.1.14 34716 2pl5A 366 6.04e-21 2e3jA 356 6.10e-21 2ocgA 254 6.52e-21 1mtzA 293 6.70e-21 c.69.1.7 79467 2i3dA 249 6.96e-21 1h2wA 710 6.98e-21 b.69.7.1,c.69.1.4 76596,76597 1womA 271 9.40e-21 1f0nA 285 9.99e-21 c.69.1.3 34636 3c8dA 403 1.01e-20 1xqwA 293 1.04e-20 1a8qA 274 1.15e-20 c.69.1.12 34702 1ufoA 238 1.36e-20 c.69.1.27 99344 1jjfA 268 1.96e-20 c.69.1.2 66765 1j1iA 296 2.20e-20 c.69.1.10 83977 2qruA 274 2.25e-20 1brt 277 2.37e-20 3bf7A 255 2.42e-20 1va4A 279 2.46e-20 c.69.1.12 108458 1pv1A 299 2.49e-20 c.69.1.34 111639 2cjpA 328 2.51e-20 2qmqA 286 3.00e-20 1wb4A 297 3.28e-20 c.69.1.2 120827 1r88A 280 3.30e-20 c.69.1.3 97219 3bwxA 285 3.38e-20 2bklA 695 3.62e-20 1imjA 210 4.53e-20 c.69.1.23 71246 1mj5A 302 4.89e-20 c.69.1.8 91285 2o2iA 300 4.99e-20 1brtA 277 5.91e-20 c.69.1.12 34699 1y37A 304 7.08e-20 3c5vA 316 7.82e-20 2qvbA 297 7.85e-20 1ehyA 294 8.22e-20 c.69.1.11 34693 1a8sA 273 9.34e-20 c.69.1.12 34710 1o6gA 710 1.38e-19 b.69.7.1,c.69.1.4 81087,81088 1xklA 273 1.40e-19 c.69.1.20 115410 1qj4A 257 1.46e-19 c.69.1.20 34796 1mpxA 615 1.61e-19 b.18.1.13,c.69.1.21 85041,85042 1tqhA 247 1.62e-19 c.69.1.29 107225 1hkhA 279 1.85e-19 c.69.1.12 90628 2yysA 286 2.42e-19 1r1dA 247 2.82e-19 c.69.1.29 96813 2psdA 318 3.10e-19 2gzsA 278 3.88e-19 2pblA 262 5.47e-19 1qo7A 394 6.76e-19 c.69.1.11 34697 1lnsA 763 7.25e-19 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1m33A 258 8.24e-19 c.69.1.26 78514 1yr2A 741 1.21e-18 1ju3A 583 2.35e-18 b.18.1.13,c.69.1.21 67300,67301 1tcaA 317 3.82e-18 c.69.1.17 34726 2hfkA 319 6.64e-18 2ogtA 498 1.64e-17 1qe3A 489 1.88e-17 c.69.1.1 34630 1ycdA 243 2.10e-17 1qlwA 328 3.18e-17 c.69.1.15 34722 1cvlA 319 3.79e-17 c.69.1.18 34786 2rauA 354 5.57e-17 1pjaA 302 6.20e-17 c.69.1.13 94758 2qjwA 176 7.81e-17 1r3dA 264 1.20e-16 c.69.1.35 111680 2q0xA 335 1.20e-16 1ukcA 522 1.78e-16 c.69.1.17 107911 1tca 317 1.87e-16 3bdvA 191 3.88e-16 1ei9A 279 4.20e-16 c.69.1.13 34713 1mnaA 298 6.36e-16 c.69.1.22 79322 1ea5A 537 6.93e-16 c.69.1.1 34592 1p0iA 529 8.60e-16 c.69.1.1 93867 1thgA 544 1.25e-15 c.69.1.17 34763 1ys1X 320 2.09e-15 1llfA 534 2.20e-15 c.69.1.17 78094 1ispA 181 3.05e-15 c.69.1.18 76778 3bixA 574 1.73e-14 1hplA 449 2.11e-14 b.12.1.2,c.69.1.19 23639,34787 2h7cA 542 2.16e-14 c.69.1.1 136207 2qs9A 194 2.54e-14 1bu8A 452 2.92e-14 b.12.1.2,c.69.1.19 23647,34795 1cvl 319 4.85e-14 2bceA 585 6.15e-14 c.69.1.1 34625 1thg 544 1.13e-13 2bce 581 1.38e-13 1uxoA 192 1.71e-13 c.69.1.31 108121 1jmkC 230 2.34e-13 c.69.1.22 71747 2px6A 316 2.48e-13 2cb9A 244 1.55e-12 1thtA 305 3.75e-11 c.69.1.13 34711 1ivyA 452 2.67e-10 c.69.1.5 34654 2dsnA 387 5.57e-08 1ac5A 483 1.05e-06 c.69.1.5 34653 1cex 214 1.52e-06 1ku0A 388 1.54e-06 c.69.1.18 72994 1uwcA 261 2.34e-06 c.69.1.17 100101 1tib 269 3.31e-06 2z5gA 387 4.06e-06 2d80A 318 1.05e-05 1tibA 269 4.98e-05 c.69.1.17 34738 1g66A 207 6.02e-05 c.69.1.30 31329 1whsA 255 7.88e-05 c.69.1.5 34649 2d81A 318 0.000246 1cexA 214 0.000306 c.69.1.30 31285 3tglA 269 0.000522 c.69.1.17 34733 2czqA 205 0.001082 2oryA 346 0.005735 1edgA 380 0.06632 c.1.8.3 28807 1whsB 153 0.5918 2q7xA 326 0.8315 1f0kA 364 1.013 c.87.1.2 35465 1zc6A 305 2.942 c.55.1.5,c.55.1.5 124888,124889 2qt1A 207 3.185 1iirA 415 3.481 c.87.1.5 62453 2jepA 395 3.838 2o2zA 323 4.455 1o9gA 250 5.389 c.66.1.29 86692 1moq 368 5.552 2qtwB 546 5.589 3b55A 451 6.612 1ooeA 236 6.778 c.2.1.2 87196 1b5pA 385 8.631 c.67.1.1 90403 2df8A 325 9.327 1tk9A 188 10.21 c.80.1.3 107082 2ze7A 253 11.04 1p3dA 475 11.58 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 3bhnA 236 11.84 2yvaA 196 12.08 2gruA 368 12.35 1pswA 348 12.44 c.87.1.7 88287 1oxwA 373 13.61 c.19.1.3 87539 2p91A 285 14.36 1v4vA 376 14.45 c.87.1.3 100313 2c2nA 339 15.40 2f5xA 312 15.68 2bkaA 242 15.87 c.2.1.2 128666 2i2wA 212 15.95 1eceA 358 15.99 c.1.8.3 28813 2yvuA 186 16.33 2i49A 429 17.07 2d4wA 504 17.12 2vc7A 314 18.42 1bd0A 388 18.47 b.49.2.2,c.1.6.1 26480,28642 2ppwA 216 18.87 1h1nA 305 18.91 c.1.8.3 70855 1rrmA 386 20.56 e.22.1.2 105081 2z8xA 617 20.63 1xgkA 352 21.52 c.2.1.2 115286 2gasA 307 22.53 2gt1A 326 22.87 1f3lA 321 22.89 c.66.1.6 59630 2ppvA 332 23.20 3b9gA 328 23.20 2iyaA 424 23.72 3crrA 323 23.78 2deoA 230 23.80 1odkA 235 24.10 c.56.2.1 86863 2ac7A 235 24.67 c.56.2.1 126543 2cb0A 333 25.03 2i87A 364 25.60 1vf8A 377 26.08 c.1.8.5,d.26.3.1 120029,120030 1w3iA 293 26.64 c.1.10.1 109152 2qmoA 220 27.05 2ywdA 191 29.09 1gsjA 258 29.73 c.73.1.2 70397 1kpgA 287 30.14 c.66.1.18 68735 2masA 314 30.36 c.70.1.1 34810 2e18A 257 31.03 2ffeA 311 32.26 c.143.1.1 133381 1ne7A 289 32.43 c.124.1.1 91833 1rxyA 253 32.62 c.56.2.1 98065 2h1yA 321 33.16 1hdcA 253 34.00 c.2.1.2 29862 2q7dA 346 34.05 1uluA 261 35.11 c.2.1.2 113292 1ir6A 424 35.30 c.107.1.2 71342 2z1mA 345 35.53 1vicA 262 35.97 c.68.1.13 100756 1bf6A 291 36.55 c.1.9.3 29065 1nhsA 447 37.71 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1thmA 279 38.11 c.41.1.1 32544 1o58A 303 38.77 c.79.1.1 92491 1eziA 228 39.24 c.68.1.13 34512 1uu1A 335 40.04 c.67.1.1 99993 2gf3A 389 40.36 c.3.1.2,d.16.1.3 135070,135071 2f46A 156 40.92 3canA 182 41.14 1eny 268 41.55 2abwA 227 42.23 c.23.16.1 126535 1ceoA 343 42.27 c.1.8.3 28808 1nijA 318 42.47 c.37.1.10,d.237.1.1 85741,85742 3c3dA 311 42.62 2egxA 269 43.07 1lqtA 456 43.61 c.3.1.1,c.4.1.1 74198,74199 1ceo 343 43.64 2gouA 365 43.68 1nhpA 447 43.79 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2nm0A 253 44.10 1edtA 271 44.60 c.1.8.5 28993 1hgxA 183 44.81 c.61.1.1 34027 2iw1A 374 45.41 c.87.1.8 137738 1xu9A 286 45.53 c.2.1.2 116052 1x6vA 630 46.07 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2bsxA 253 46.21 c.56.2.1 129128 1htwA 158 46.34 c.37.1.18 71083 1rzuA 485 47.28 c.87.1.8 105140 1tcvA 287 47.42 2hqsC 118 47.48 d.79.7.1 136666 2f9sA 151 47.68 c.47.1.10 133168 2qm1A 326 47.80 1o89A 345 48.72 b.35.1.2,c.2.1.1 92644,92645 1uzmA 247 48.76 c.2.1.2 119811 1e5kA 201 48.83 c.68.1.8 34578 2c1xA 456 48.87 2bcoA 350 49.07 c.56.5.7 128302 4uagA 437 50.31 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1je0A 236 50.51 c.56.2.1 66581 1w6uA 302 50.91 c.2.1.2 114288 1mla 309 51.31 3c86A 328 52.45 1o4sA 389 52.70 c.67.1.1 86620 2dtxA 264 52.91 2pocA 367 53.10 3cjpA 272 53.14 2csuA 457 54.03 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1vhwA 253 54.14 c.56.2.1 100706 2ew2A 316 54.53 2dkfA 431 55.12 1el5A 389 55.64 c.3.1.2,d.16.1.3 30369,37937 1ryiA 382 55.82 c.3.1.2,d.16.1.3 118813,118814 3cnqS 266 57.07 2j3hA 345 57.35 2h7mA 269 57.77 c.2.1.2 136219 1i52A 236 58.58 c.68.1.13 61767 1v98A 140 58.97 1qgoA 264 59.04 c.92.1.2 35596 2dvzA 314 60.32 3cggA 195 60.88 1yoeA 322 61.32 1uayA 242 62.07 c.2.1.2 88390 2jfgA 445 62.14 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2cuyA 305 62.86 1ic6A 279 64.10 c.41.1.1 62257 1v2dA 381 65.45 c.67.1.1 108281 1k0fA 277 66.43 c.92.2.2 71974 1a7jA 290 66.61 c.37.1.6 31952 2epjA 434 66.61 1qwjA 229 67.57 c.68.1.13 96478 2ax4A 198 67.74 2d1yA 256 67.94 c.2.1.2 131151 1kngA 156 68.73 c.47.1.10 72777 1lv7A 257 68.74 c.37.1.20 78232 2ae2A 260 69.03 c.2.1.2 29945 1chd 203 69.14 2pc8A 400 69.98 1wmaA 276 70.62 c.2.1.2 121042 3c1oA 321 70.97 1ybdA 239 71.78 c.73.1.3 122884 1bu6O 501 72.17 c.55.1.4,c.55.1.4 33499,33500 2ch5A 347 72.20 c.55.1.5,c.55.1.5 130453,130454 1bdbA 277 72.27 c.2.1.2 29874 3cdxA 354 73.52 2b9wA 424 73.93 1xrjA 261 74.22 c.37.1.6 122256 1gl6A 436 74.88 c.37.1.11 70259 2ioyA 283 75.27 2v03A 303 75.91 3ca8A 266 76.85 2ixtA 310 76.88 2gs8A 317 77.71 2pw6A 271 77.85 1s3iA 310 78.33 b.46.1.1,c.65.1.1 98435,98436 1g5cA 170 78.63 c.53.2.1 60264 1qnrA 344 80.24 c.1.8.3 28834 1zmtA 254 80.42 c.2.1.2 125363 2fexA 188 80.98 c.23.16.2 133354 3ch7A 266 81.26 1yb0A 159 82.22 d.118.1.1 122865 2nv0A 196 82.28 c.23.16.1 138625 2d8aA 348 82.39 2ywrA 216 82.96 1a7j 290 83.51 2g29A 417 84.30 1fg7A 356 84.48 c.67.1.1 59819 1yd9A 193 85.24 c.50.1.2 122976 1mlaA 309 85.55 c.19.1.1,d.58.23.1 31031,39383 2pk3A 321 85.83 1iz0A 302 86.35 b.35.1.2,c.2.1.1 83821,83822 2ywuA 181 86.86 1y5mA 276 87.24 c.2.1.2 122645 1hdhA 536 87.71 c.76.1.2 65805 1gegA 256 87.90 c.2.1.2 29888 1l3iA 192 88.89 c.66.1.22 77676 2b6nA 278 89.34 2cfcA 250 89.72