# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 2.25e-22 c.69.1.25 77772 1vlqA 337 1.42e-21 c.69.1.25 108848 1u4nA 310 2.10e-21 c.69.1.2 113021 1b6g 310 2.66e-21 2jbwA 386 4.20e-21 1b6gA 310 4.78e-21 c.69.1.8 34661 1lzlA 323 7.72e-21 c.69.1.2 78306 1u2eA 289 1.02e-20 1wm1A 317 1.09e-20 c.69.1.7 109405 1zi8A 236 1.47e-20 2og1A 286 1.58e-20 1jkmA 358 1.79e-20 c.69.1.2 34633 2b61A 377 1.80e-20 2qm0A 275 1.90e-20 3b5eA 223 2.00e-20 2hdwA 367 2.51e-20 2b20A 403 2.55e-20 b.1.18.20,c.69.1.2 127685,127686 2uz0A 263 2.57e-20 1bn7A 294 2.62e-20 c.69.1.8 34677 1din 236 2.83e-20 1jfrA 262 2.98e-20 c.69.1.16 34724 2pujA 286 3.14e-20 1zd3A 555 3.33e-20 c.108.1.2,c.69.1.11 124930,124931 2r11A 306 3.35e-20 2z3zA 706 4.11e-20 1q0rA 298 4.56e-20 c.69.1.28 95508 1c4xA 285 4.72e-20 c.69.1.10 34684 1hlgA 371 4.85e-20 c.69.1.6 34656 2rhwA 283 5.18e-20 2hu5A 582 5.19e-20 b.69.7.2,c.69.1.33 136763,136764 2o2gA 223 5.32e-20 2puhA 286 5.82e-20 2hm7A 310 6.03e-20 3bdiA 207 6.23e-20 1vkhA 273 6.40e-20 c.69.1.32 108662 1orvA 728 7.36e-20 b.70.3.1,c.69.1.24 87354,87355 1k8qA 377 7.93e-20 c.69.1.6 72177 2o7rA 338 8.47e-20 1jjiA 311 8.57e-20 c.69.1.2 66766 2fukA 220 9.05e-20 1azwA 313 1.02e-19 c.69.1.7 34658 1fj2A 232 1.06e-19 c.69.1.14 34720 2fx5A 258 1.13e-19 1uk8A 282 1.20e-19 c.69.1.10 107907 1zoiA 276 1.36e-19 3bxpA 277 1.41e-19 2r8bA 251 1.46e-19 2d5lA 706 1.48e-19 2e3jA 356 1.61e-19 2veoA 441 1.64e-19 2pl5A 366 1.71e-19 2ocgA 254 1.99e-19 1auoA 218 2.04e-19 c.69.1.14 34716 1womA 271 2.13e-19 1mtzA 293 2.38e-19 c.69.1.7 79467 3c8dA 403 2.48e-19 2i3dA 249 2.52e-19 1dqzA 280 2.56e-19 c.69.1.3 34638 1h2wA 710 2.78e-19 b.69.7.1,c.69.1.4 76596,76597 1xqwA 293 3.28e-19 1a8qA 274 3.70e-19 c.69.1.12 34702 1f0nA 285 3.72e-19 c.69.1.3 34636 1ufoA 238 4.86e-19 c.69.1.27 99344 3bf7A 255 5.17e-19 1j1iA 296 5.23e-19 c.69.1.10 83977 1brt 277 5.69e-19 2qruA 274 5.92e-19 1jjfA 268 6.91e-19 c.69.1.2 66765 2qmqA 286 7.30e-19 1pv1A 299 7.54e-19 c.69.1.34 111639 2cjpA 328 7.60e-19 1wb4A 297 7.65e-19 c.69.1.2 120827 1va4A 279 7.71e-19 c.69.1.12 108458 3bwxA 285 1.00e-18 2bklA 695 1.03e-18 1imjA 210 1.09e-18 c.69.1.23 71246 1brtA 277 1.24e-18 c.69.1.12 34699 2o2iA 300 1.26e-18 1r88A 280 1.28e-18 c.69.1.3 97219 1mj5A 302 1.33e-18 c.69.1.8 91285 3c5vA 316 1.37e-18 1y37A 304 1.85e-18 2qvbA 297 1.87e-18 1ehyA 294 2.22e-18 c.69.1.11 34693 1a8sA 273 2.68e-18 c.69.1.12 34710 1qj4A 257 2.69e-18 c.69.1.20 34796 1xklA 273 3.10e-18 c.69.1.20 115410 1hkhA 279 3.17e-18 c.69.1.12 90628 1tqhA 247 3.30e-18 c.69.1.29 107225 1o6gA 710 3.71e-18 b.69.7.1,c.69.1.4 81087,81088 1mpxA 615 3.78e-18 b.18.1.13,c.69.1.21 85041,85042 2yysA 286 5.19e-18 1r1dA 247 5.25e-18 c.69.1.29 96813 2psdA 318 7.10e-18 2gzsA 278 8.39e-18 2pblA 262 1.02e-17 1qo7A 394 1.39e-17 c.69.1.11 34697 1lnsA 763 1.65e-17 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1m33A 258 1.80e-17 c.69.1.26 78514 1yr2A 741 2.31e-17 1tcaA 317 5.91e-17 c.69.1.17 34726 1ju3A 583 6.23e-17 b.18.1.13,c.69.1.21 67300,67301 2hfkA 319 9.98e-17 2ogtA 498 2.64e-16 1qe3A 489 2.78e-16 c.69.1.1 34630 1ycdA 243 3.15e-16 1qlwA 328 4.11e-16 c.69.1.15 34722 1cvlA 319 4.83e-16 c.69.1.18 34786 2rauA 354 9.60e-16 1pjaA 302 1.03e-15 c.69.1.13 94758 2qjwA 176 1.12e-15 1r3dA 264 1.62e-15 c.69.1.35 111680 2q0xA 335 1.93e-15 1ukcA 522 2.14e-15 c.69.1.17 107911 1tca 317 2.24e-15 1ei9A 279 4.68e-15 c.69.1.13 34713 3bdvA 191 4.87e-15 1ea5A 537 6.41e-15 c.69.1.1 34592 1mnaA 298 8.80e-15 c.69.1.22 79322 1p0iA 529 9.38e-15 c.69.1.1 93867 1thgA 544 1.48e-14 c.69.1.17 34763 1ys1X 320 1.73e-14 1llfA 534 1.73e-14 c.69.1.17 78094 1ispA 181 2.33e-14 c.69.1.18 76778 3bixA 574 1.15e-13 2h7cA 542 1.63e-13 c.69.1.1 136207 2qs9A 194 2.58e-13 1hplA 449 2.59e-13 b.12.1.2,c.69.1.19 23639,34787 1cvl 319 3.16e-13 1bu8A 452 3.32e-13 b.12.1.2,c.69.1.19 23647,34795 2bceA 585 3.99e-13 c.69.1.1 34625 2bce 581 8.41e-13 1thg 544 9.78e-13 1uxoA 192 1.16e-12 c.69.1.31 108121 2px6A 316 1.31e-12 1jmkC 230 1.38e-12 c.69.1.22 71747 2cb9A 244 1.20e-11 1thtA 305 2.48e-10 c.69.1.13 34711 1ivyA 452 6.52e-10 c.69.1.5 34654 2dsnA 387 2.12e-07 1ac5A 483 1.81e-06 c.69.1.5 34653 1ku0A 388 2.33e-06 c.69.1.18 72994 1cex 214 3.57e-06 2z5gA 387 5.60e-06 1uwcA 261 8.25e-06 c.69.1.17 100101 1tib 269 1.21e-05 2d80A 318 1.61e-05 1g66A 207 9.63e-05 c.69.1.30 31329 1tibA 269 0.000130 c.69.1.17 34738 1whsA 255 0.000156 c.69.1.5 34649 2d81A 318 0.000498 1cexA 214 0.000514 c.69.1.30 31285 3tglA 269 0.001183 c.69.1.17 34733 2czqA 205 0.001251 2oryA 346 0.009234 1edgA 380 0.1023 c.1.8.3 28807 1whsB 153 0.4175 2q7xA 326 0.8408 1f0kA 364 1.143 c.87.1.2 35465 2qt1A 207 3.441 2o2zA 323 3.914 2jepA 395 4.316 1zc6A 305 4.424 c.55.1.5,c.55.1.5 124888,124889 1moq 368 4.832 1iirA 415 5.446 c.87.1.5 62453 2qtwB 546 5.701 1ooeA 236 6.140 c.2.1.2 87196 1o9gA 250 8.300 c.66.1.29 86692 2df8A 325 8.510 2gruA 368 9.848 2ze7A 253 9.96 3b55A 451 10.23 1tk9A 188 10.63 c.80.1.3 107082 1p3dA 475 10.88 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1v4vA 376 10.94 c.87.1.3 100313 3bhnA 236 11.34 2yvaA 196 11.76 1pswA 348 12.17 c.87.1.7 88287 2i2wA 212 13.90 1oxwA 373 16.83 c.19.1.3 87539 1xgkA 352 16.92 c.2.1.2 115286 2gasA 307 17.12 2c2nA 339 17.31 2deoA 230 17.44 1b5pA 385 17.66 c.67.1.1 90403 2f5xA 312 17.73 2yvuA 186 18.34 2p91A 285 18.71 1h1nA 305 18.97 c.1.8.3 70855 2cb0A 333 19.00 1eceA 358 19.25 c.1.8.3 28813 2ppvA 332 19.37 2ppwA 216 19.53 2vc7A 314 19.53 1rrmA 386 20.12 e.22.1.2 105081 3crrA 323 20.99 2gt1A 326 21.37 1bd0A 388 21.58 b.49.2.2,c.1.6.1 26480,28642 2iyaA 424 21.85 2gf3A 389 22.44 c.3.1.2,d.16.1.3 135070,135071 2ac7A 235 22.59 c.56.2.1 126543 2i87A 364 22.73 2i49A 429 23.04 2qmoA 220 23.30 1w3iA 293 23.38 c.1.10.1 109152 2bkaA 242 24.31 c.2.1.2 128666 1kpgA 287 25.75 c.66.1.18 68735 2z8xA 617 26.14 1gsjA 258 26.99 c.73.1.2 70397 1ir6A 424 27.05 c.107.1.2 71342 1ne7A 289 27.25 c.124.1.1 91833 2e18A 257 28.60 3b9gA 328 28.81 2masA 314 28.97 c.70.1.1 34810 1eny 268 29.95 2d4wA 504 29.96 1thmA 279 30.06 c.41.1.1 32544 1vf8A 377 30.34 c.1.8.5,d.26.3.1 120029,120030 1vicA 262 30.62 c.68.1.13 100756 1f3lA 321 31.05 c.66.1.6 59630 1hdcA 253 31.27 c.2.1.2 29862 1odkA 235 33.24 c.56.2.1 86863 1xu9A 286 33.26 c.2.1.2 116052 2iw1A 374 33.37 c.87.1.8 137738 1eziA 228 33.66 c.68.1.13 34512 3c3dA 311 33.70 2ffeA 311 33.95 c.143.1.1 133381 1uluA 261 34.31 c.2.1.2 113292 1ceo 343 34.82 2ywdA 191 36.17 1edtA 271 36.33 c.1.8.5 28993 1bf6A 291 36.53 c.1.9.3 29065 2bsxA 253 37.44 c.56.2.1 129128 1htwA 158 38.46 c.37.1.18 71083 1rxyA 253 38.98 c.56.2.1 98065 1nhsA 447 39.42 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1w6uA 302 39.81 c.2.1.2 114288 2q7dA 346 40.13 1yoeA 322 40.22 1je0A 236 40.28 c.56.2.1 66581 2pocA 367 40.44 2h1yA 321 40.50 3canA 182 40.60 2b9wA 424 40.77 2h7mA 269 40.96 c.2.1.2 136219 1ic6A 279 41.53 c.41.1.1 62257 2gouA 365 41.65 3cnqS 266 41.78 2egxA 269 41.81 2nm0A 253 41.82 2abwA 227 42.03 c.23.16.1 126535 2z1mA 345 42.65 4uagA 437 43.40 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2f46A 156 43.55 2j3hA 345 43.65 1bdbA 277 43.99 c.2.1.2 29874 1uzmA 247 45.17 c.2.1.2 119811 2bcoA 350 45.72 c.56.5.7 128302 2ew2A 316 45.73 1tcvA 287 45.83 1nhpA 447 46.83 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1ceoA 343 48.11 c.1.8.3 28808 2c1xA 456 49.53 1a7jA 290 49.71 c.37.1.6 31952 1e5kA 201 50.05 c.68.1.8 34578 3c86A 328 51.22 1v2dA 381 51.82 c.67.1.1 108281 2ae2A 260 51.91 c.2.1.2 29945 1el5A 389 52.00 c.3.1.2,d.16.1.3 30369,37937 2jfgA 445 52.20 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1uayA 242 52.57 c.2.1.2 88390 2dtxA 264 52.63 1lqtA 456 53.20 c.3.1.1,c.4.1.1 74198,74199 1a7j 290 53.41 1nijA 318 54.04 c.37.1.10,d.237.1.1 85741,85742 2csuA 457 54.88 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1bdb 277 55.56 1uu1A 335 56.27 c.67.1.1 99993 3c1oA 321 57.88 3cggA 195 58.05 2dkfA 431 58.34 1i52A 236 59.00 c.68.1.13 61767 3cjpA 272 59.08 2ywrA 216 59.42 1gegA 256 60.21 c.2.1.2 29888 2ixtA 310 60.55 1qwjA 229 60.59 c.68.1.13 96478 1hgxA 183 61.01 c.61.1.1 34027 1x6vA 630 61.18 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1o4sA 389 61.41 c.67.1.1 86620 1k0fA 277 62.80 c.92.2.2 71974 1gl6A 436 63.13 c.37.1.11 70259 1c93A 265 63.34 c.1.8.5 28998 1vhwA 253 63.48 c.56.2.1 100706 1rzuA 485 63.60 c.87.1.8 105140 1qgoA 264 63.83 c.92.1.2 35596 1kngA 156 64.00 c.47.1.10 72777 1v98A 140 64.73 1y5mA 276 64.78 c.2.1.2 122645 2qm1A 326 65.56 1ybdA 239 65.89 c.73.1.3 122884 1mla 309 67.15 2d1yA 256 67.17 c.2.1.2 131151 1wmaA 276 68.58 c.2.1.2 121042 2dm6A 333 68.63 b.35.1.2,c.2.1.1 131567,131568 2ihtA 573 68.69 1qnrA 344 69.08 c.1.8.3 28834 1iz0A 302 69.47 b.35.1.2,c.2.1.1 83821,83822 1vljA 407 69.68 e.22.1.2 108832 1x1tA 260 69.71 c.2.1.2 121597 2iyfA 430 70.34 2cfcA 250 70.61 2f9sA 151 71.73 c.47.1.10 133168 2hqsC 118 71.85 d.79.7.1 136666 1y56B 382 72.60 1chd 203 73.08 1ff9A 450 73.34 c.2.1.3,d.81.1.2 30039,39954 2pw6A 271 73.55 1lv7A 257 73.61 c.37.1.20 78232 1yb0A 159 73.83 d.118.1.1 122865 1zmtA 254 74.07 c.2.1.2 125363 2gs8A 317 74.32 2cuyA 305 74.43 2b6nA 278 74.48 1e8cA 498 74.73 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 3ch7A 266 75.18 2bs3A 656 75.74 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2g29A 417 76.16 1ryiA 382 76.92 c.3.1.2,d.16.1.3 118813,118814 2ax4A 198 77.10 1z15A 344 77.47 2hqbA 296 77.48 1tvnA 293 77.63 c.1.8.3 119360 2pc8A 400 78.14 3cdxA 354 78.61 1geeA 261 79.92 c.2.1.2 90509 1gu7A 364 80.12 b.35.1.2,c.2.1.1 83321,83322 3co4A 312 81.45 1o58A 303 81.58 c.79.1.1 92491 2e5fA 325 82.32 2ch5A 347 82.91 c.55.1.5,c.55.1.5 130453,130454 1hdhA 536 83.16 c.76.1.2 65805 1im5A 180 83.63 c.33.1.3 66211 3ca8A 266 83.64 1fg7A 356 84.24 c.67.1.1 59819 2v03A 303 86.16 1e6uA 321 86.48 c.2.1.2 29805 2pd6A 264 86.52 1bu6O 501 86.98 c.55.1.4,c.55.1.4 33499,33500 1oi7A 288 87.78 c.2.1.8,c.23.4.1 87049,87050 1nffA 260 88.16 c.2.1.2 80457 2epjA 434 88.24 1x7gA 261 88.29 c.2.1.2 114929 2c40A 312 88.45 1i2cA 404 88.46 c.2.1.2 83666 2ew8A 249 88.54 c.2.1.2 132447 2ioyA 283 88.72 2amlA 373 89.15 2ef5A 290 89.45 1y9zA 441 89.46 1j2rA 199 89.71 c.33.1.3 90788