# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 1.13e-17 c.69.1.25 77772 1vlqA 337 1.53e-17 c.69.1.25 108848 1b6g 310 3.62e-17 1b6gA 310 4.73e-17 c.69.1.8 34661 1u4nA 310 5.72e-17 c.69.1.2 113021 2hu5A 582 9.75e-17 b.69.7.2,c.69.1.33 136763,136764 1u2eA 289 1.09e-16 2jbwA 386 1.22e-16 1lzlA 323 1.42e-16 c.69.1.2 78306 1wm1A 317 1.56e-16 c.69.1.7 109405 2r11A 306 1.59e-16 1zi8A 236 1.63e-16 1jkmA 358 2.07e-16 c.69.1.2 34633 1jjiA 311 2.14e-16 c.69.1.2 66766 2hdwA 367 2.16e-16 2pujA 286 2.24e-16 2o7rA 338 2.52e-16 2uz0A 263 2.52e-16 3bdiA 207 2.60e-16 3b5eA 223 2.70e-16 1c4xA 285 2.73e-16 c.69.1.10 34684 1din 236 3.30e-16 1k8qA 377 3.33e-16 c.69.1.6 72177 2hm7A 310 3.34e-16 2og1A 286 3.47e-16 2fx5A 258 3.47e-16 1bn7A 294 3.78e-16 c.69.1.8 34677 2qm0A 275 3.98e-16 2o2gA 223 4.13e-16 1jfrA 262 4.86e-16 c.69.1.16 34724 1q0rA 298 6.41e-16 c.69.1.28 95508 2r8bA 251 6.75e-16 2b61A 377 6.86e-16 1orvA 728 7.12e-16 b.70.3.1,c.69.1.24 87354,87355 1uk8A 282 7.18e-16 c.69.1.10 107907 1zoiA 276 7.69e-16 3bxpA 277 7.75e-16 2rhwA 283 8.53e-16 2b20A 403 8.64e-16 b.1.18.20,c.69.1.2 127685,127686 2pl5A 366 9.42e-16 3bf7A 255 1.00e-15 1auoA 218 1.02e-15 c.69.1.14 34716 1fj2A 232 1.14e-15 c.69.1.14 34720 2qmqA 286 1.20e-15 1f0nA 285 1.22e-15 c.69.1.3 34636 2fukA 220 1.22e-15 2i3dA 249 1.31e-15 1vkhA 273 1.32e-15 c.69.1.32 108662 1dqzA 280 1.46e-15 c.69.1.3 34638 1womA 271 1.49e-15 1azwA 313 1.51e-15 c.69.1.7 34658 1jjfA 268 1.52e-15 c.69.1.2 66765 2puhA 286 1.56e-15 1pv1A 299 1.61e-15 c.69.1.34 111639 1hlgA 371 1.70e-15 c.69.1.6 34656 1r88A 280 2.15e-15 c.69.1.3 97219 1zd3A 555 2.32e-15 c.108.1.2,c.69.1.11 124930,124931 1ufoA 238 2.38e-15 c.69.1.27 99344 3bwxA 285 2.39e-15 1j1iA 296 2.46e-15 c.69.1.10 83977 1mpxA 615 2.86e-15 b.18.1.13,c.69.1.21 85041,85042 2cjpA 328 2.90e-15 1a8qA 274 2.99e-15 c.69.1.12 34702 1wb4A 297 3.02e-15 c.69.1.2 120827 2veoA 441 3.26e-15 2bklA 695 3.32e-15 3c5vA 316 3.35e-15 1brt 277 3.60e-15 2qruA 274 3.75e-15 2z3zA 706 4.81e-15 1va4A 279 4.81e-15 c.69.1.12 108458 1imjA 210 4.82e-15 c.69.1.23 71246 2ocgA 254 4.84e-15 1mtzA 293 5.27e-15 c.69.1.7 79467 1xklA 273 5.49e-15 c.69.1.20 115410 1xqwA 293 5.75e-15 1a8sA 273 5.86e-15 c.69.1.12 34710 1brtA 277 6.51e-15 c.69.1.12 34699 3c8dA 403 7.72e-15 1hkhA 279 7.75e-15 c.69.1.12 90628 1h2wA 710 8.28e-15 b.69.7.1,c.69.1.4 76596,76597 2o2iA 300 1.01e-14 2e3jA 356 1.12e-14 1mj5A 302 1.22e-14 c.69.1.8 91285 2qvbA 297 1.30e-14 1r1dA 247 1.48e-14 c.69.1.29 96813 1tcaA 317 1.96e-14 c.69.1.17 34726 2d5lA 706 1.97e-14 1y37A 304 2.42e-14 2yysA 286 2.45e-14 2gzsA 278 2.71e-14 1tqhA 247 2.91e-14 c.69.1.29 107225 1ehyA 294 3.11e-14 c.69.1.11 34693 1m33A 258 3.74e-14 c.69.1.26 78514 1qj4A 257 3.87e-14 c.69.1.20 34796 2psdA 318 4.16e-14 2pblA 262 4.77e-14 1ju3A 583 5.51e-14 b.18.1.13,c.69.1.21 67300,67301 1yr2A 741 5.77e-14 1qo7A 394 7.30e-14 c.69.1.11 34697 2hfkA 319 1.25e-13 1ycdA 243 2.79e-13 1lnsA 763 4.47e-13 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1o6gA 710 5.44e-13 b.69.7.1,c.69.1.4 81087,81088 1cvlA 319 6.90e-13 c.69.1.18 34786 2ogtA 498 7.32e-13 2qjwA 176 1.13e-12 1ukcA 522 1.19e-12 c.69.1.17 107911 1pjaA 302 1.35e-12 c.69.1.13 94758 1qlwA 328 1.48e-12 c.69.1.15 34722 2rauA 354 1.96e-12 1qe3A 489 2.48e-12 c.69.1.1 34630 1tca 317 3.68e-12 2q0xA 335 4.06e-12 1mnaA 298 4.17e-12 c.69.1.22 79322 3bdvA 191 4.92e-12 1ei9A 279 5.56e-12 c.69.1.13 34713 1r3dA 264 6.40e-12 c.69.1.35 111680 1ea5A 537 1.09e-11 c.69.1.1 34592 1ys1X 320 1.29e-11 2h7cA 542 1.82e-11 c.69.1.1 136207 1thgA 544 1.86e-11 c.69.1.17 34763 1ispA 181 1.96e-11 c.69.1.18 76778 1llfA 534 3.76e-11 c.69.1.17 78094 1hplA 449 6.87e-11 b.12.1.2,c.69.1.19 23639,34787 2qs9A 194 8.34e-11 1p0iA 529 8.43e-11 c.69.1.1 93867 1bu8A 452 1.18e-10 b.12.1.2,c.69.1.19 23647,34795 1cvl 319 1.19e-10 2bce 581 1.73e-10 3bixA 574 1.83e-10 1thg 544 3.02e-10 1uxoA 192 3.81e-10 c.69.1.31 108121 1jmkC 230 7.09e-10 c.69.1.22 71747 2bceA 585 1.22e-09 c.69.1.1 34625 2px6A 316 2.16e-09 2cb9A 244 4.45e-09 1thtA 305 1.04e-08 c.69.1.13 34711 1ivyA 452 1.38e-08 c.69.1.5 34654 2dsnA 387 3.24e-06 2z5gA 387 2.78e-05 1ac5A 483 3.64e-05 c.69.1.5 34653 1ku0A 388 6.04e-05 c.69.1.18 72994 1cex 214 0.000112 1uwcA 261 0.000221 c.69.1.17 100101 1whsA 255 0.000585 c.69.1.5 34649 1tib 269 0.000805 1g66A 207 0.001793 c.69.1.30 31329 1tibA 269 0.005511 c.69.1.17 34738 2czqA 205 0.009143 2d80A 318 0.00996 1cexA 214 0.01183 c.69.1.30 31285 3tglA 269 0.03545 c.69.1.17 34733 2oryA 346 0.06990 2d81A 318 0.4268 1edgA 380 1.599 c.1.8.3 28807 2q7xA 326 2.212 3b55A 451 3.654 1zc6A 305 3.691 c.55.1.5,c.55.1.5 124888,124889 2bkaA 242 4.377 c.2.1.2 128666 1whsB 153 4.671 1ne7A 289 5.537 c.124.1.1 91833 1hdhA 536 6.422 c.76.1.2 65805 2qtwB 546 6.642 1ct9A 553 7.827 c.26.2.1,d.153.1.1 31616,41834 1f0kA 364 8.587 c.87.1.2 35465 1k0fA 277 9.190 c.92.2.2 71974 2ppwA 216 9.539 3crrA 323 9.875 2qt1A 207 10.06 2i2wA 212 10.74 2h1yA 321 11.54 2c1xA 456 11.63 2masA 314 12.06 c.70.1.1 34810 2ffeA 311 13.70 c.143.1.1 133381 2j3hA 345 14.40 2hzbA 333 16.02 c.143.1.1 136911 1x6vA 630 16.02 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1pixA 587 16.51 c.14.1.4,c.14.1.4 118578,118579 1ooeA 236 16.96 c.2.1.2 87196 2nxwA 565 18.11 2c0hA 353 18.52 c.1.8.3 129594 1gteA 1025 19.72 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1xahA 354 19.99 1bu6O 501 20.59 c.55.1.4,c.55.1.4 33499,33500 1o4sA 389 21.41 c.67.1.1 86620 1o9gA 250 21.45 c.66.1.29 86692 3b9gA 328 21.48 2qgmA 445 22.50 1iirA 415 22.94 c.87.1.5 62453 1tk9A 188 23.28 c.80.1.3 107082 2ez9A 603 23.35 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1z45A 699 23.58 b.30.5.4,c.2.1.2 124427,124428 1l5oA 356 23.74 c.39.1.1 77711 2dkfA 431 23.90 4uagA 437 23.93 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1ox0A 430 24.18 c.95.1.1,c.95.1.1 87495,87496 1gl6A 436 24.25 c.37.1.11 70259 1ve5A 311 24.94 c.79.1.1 120013 2rjoA 332 24.97 1vf8A 377 25.56 c.1.8.5,d.26.3.1 120029,120030 1rrmA 386 26.30 e.22.1.2 105081 2yvuA 186 27.37 2o2zA 323 28.47 2ppvA 332 28.76 2p91A 285 29.87 2deoA 230 30.39 1pvdA 537 30.62 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2jfgA 445 30.97 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1oxwA 373 31.25 c.19.1.3 87539 1b3bA 415 32.15 c.2.1.7,c.58.1.1 30244,33892 1d3gA 367 32.18 c.1.4.1 28600 2qmoA 220 33.09 2yvaA 196 33.18 2g1iA 563 34.24 1z15A 344 35.98 1p0fA 373 36.35 b.35.1.2,c.2.1.1 87642,87643 2gruA 368 37.46 2r6r1 338 39.29 1e5mA 416 40.17 c.95.1.1,c.95.1.1 58973,58974 2bsxA 253 40.31 c.56.2.1 129128 1bd0A 388 40.82 b.49.2.2,c.1.6.1 26480,28642 2b8nA 429 41.25 c.118.1.1 128093 1eceA 358 41.61 c.1.8.3 28813 1kqpA 271 41.74 c.26.2.1 72883 2f5xA 312 42.49 1zbqA 327 43.79 c.2.1.2 124862 2nutB 753 44.64 1moq 368 44.99 1pcxA 810 45.99 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2e18A 257 46.37 1xgkA 352 46.79 c.2.1.2 115286 3c86A 328 47.10 1fs5A 266 47.30 c.124.1.1 65044 2ze7A 253 49.18 2e7zA 727 49.79 1wohA 305 51.23 c.42.1.1 109446 1bf6A 291 51.91 c.1.9.3 29065 1a9xA 1058 51.98 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1kpgA 287 52.86 c.66.1.18 68735 1l9xA 315 54.05 c.23.16.1 73762 1muwA 386 54.71 c.1.15.3 79495 1gkpA 458 55.28 b.92.1.3,c.1.9.6 70231,70232 2i87A 364 55.28 2e57A 637 57.49 2hjsA 340 57.57 c.2.1.3,d.81.1.1 136547,136548 2i7vA 459 57.92 1on3A 523 59.29 c.14.1.4,c.14.1.4 87107,87108 2jhfA 374 59.32 b.35.1.2,c.2.1.1 138314,138315 1y8cA 246 59.91 c.66.1.43 116563 2bcoA 350 63.97 c.56.5.7 128302 2ioyA 283 64.84 3bhnA 236 65.08 1e5kA 201 66.09 c.68.1.8 34578 1kewA 361 66.27 c.2.1.2 68544 1uzmA 247 66.52 c.2.1.2 119811 2z2uA 311 68.28 2ef0A 301 68.29 1ir6A 424 69.38 c.107.1.2 71342 2hy7A 406 69.39 1yoeA 322 69.52 3c3jA 384 69.64 1tedA 393 69.70 c.95.1.2 106807 1rxyA 253 70.10 c.56.2.1 98065 2hqsC 118 71.34 d.79.7.1 136666 1xw8A 252 72.40 c.6.2.5 116111 3c1oA 321 73.71 2id4A 503 74.01 b.18.1.20,c.41.1.1 137265,137266 2p1zA 180 74.21 1rzuA 485 74.27 c.87.1.8 105140 2eplX 627 74.43 2qm1A 326 75.08 2nm0A 253 76.39 1hgxA 183 76.52 c.61.1.1 34027 2df8A 325 76.62 2vc7A 314 76.69 1a8rA 221 77.19 d.96.1.1 40587 2ac7A 235 77.81 c.56.2.1 126543 2i49A 429 78.89 1je0A 236 79.42 c.56.2.1 66581 2h7mA 269 80.54 c.2.1.2 136219 2dkhA 639 82.77 2q46A 253 84.55 c.2.1.2 139825 2ywdA 191 84.63 1hdcA 253 85.52 c.2.1.2 29862 1nhsA 447 86.55 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ozhA 566 86.63 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1lv7A 257 87.90 c.37.1.20 78232 2pocA 367 88.42