# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 2.94e-22 c.69.1.25 77772 1vlqA 337 1.24e-21 c.69.1.25 108848 1u4nA 310 3.26e-21 c.69.1.2 113021 1b6g 310 3.74e-21 1b6gA 310 5.23e-21 c.69.1.8 34661 2hdwA 367 6.31e-21 1u2eA 289 8.95e-21 2jbwA 386 1.08e-20 1wm1A 317 1.41e-20 c.69.1.7 109405 2og1A 286 1.51e-20 1zi8A 236 1.51e-20 1jkmA 358 1.86e-20 c.69.1.2 34633 2qm0A 275 2.35e-20 1lzlA 323 2.37e-20 c.69.1.2 78306 1hlgA 371 2.41e-20 c.69.1.6 34656 3bdiA 207 2.56e-20 1q0rA 298 2.73e-20 c.69.1.28 95508 2pujA 286 2.81e-20 1jfrA 262 2.83e-20 c.69.1.16 34724 2r11A 306 2.97e-20 1c4xA 285 2.99e-20 c.69.1.10 34684 2b61A 377 3.01e-20 2uz0A 263 3.17e-20 1din 236 3.29e-20 1k8qA 377 3.62e-20 c.69.1.6 72177 2fx5A 258 3.66e-20 1bn7A 294 3.83e-20 c.69.1.8 34677 2o2gA 223 3.92e-20 3b5eA 223 4.06e-20 2z3zA 706 4.71e-20 2hu5A 582 4.97e-20 b.69.7.2,c.69.1.33 136763,136764 2rhwA 283 5.15e-20 2o7rA 338 5.91e-20 2puhA 286 8.37e-20 1orvA 728 8.42e-20 b.70.3.1,c.69.1.24 87354,87355 1uk8A 282 8.55e-20 c.69.1.10 107907 2r8bA 251 8.58e-20 2b20A 403 9.39e-20 b.1.18.20,c.69.1.2 127685,127686 1zoiA 276 1.00e-19 2hm7A 310 1.16e-19 1mtzA 293 1.20e-19 c.69.1.7 79467 3bxpA 277 1.20e-19 1zd3A 555 1.23e-19 c.108.1.2,c.69.1.11 124930,124931 2i3dA 249 1.38e-19 1jjiA 311 1.41e-19 c.69.1.2 66766 1fj2A 232 1.46e-19 c.69.1.14 34720 2e3jA 356 1.49e-19 2pl5A 366 1.51e-19 2fukA 220 1.52e-19 2d5lA 706 1.57e-19 1vkhA 273 1.81e-19 c.69.1.32 108662 1azwA 313 1.90e-19 c.69.1.7 34658 1j1iA 296 2.01e-19 c.69.1.10 83977 1auoA 218 2.02e-19 c.69.1.14 34716 2veoA 441 2.16e-19 1xqwA 293 2.25e-19 1dqzA 280 2.50e-19 c.69.1.3 34638 3bf7A 255 2.95e-19 1womA 271 3.11e-19 1h2wA 710 3.17e-19 b.69.7.1,c.69.1.4 76596,76597 2cjpA 328 3.64e-19 1jjfA 268 3.84e-19 c.69.1.2 66765 1ufoA 238 3.85e-19 c.69.1.27 99344 2ocgA 254 4.24e-19 1a8qA 274 4.30e-19 c.69.1.12 34702 1f0nA 285 4.32e-19 c.69.1.3 34636 1brt 277 4.86e-19 1pv1A 299 4.87e-19 c.69.1.34 111639 3c5vA 316 5.24e-19 1r88A 280 5.33e-19 c.69.1.3 97219 1wb4A 297 6.15e-19 c.69.1.2 120827 3bwxA 285 6.87e-19 1va4A 279 7.01e-19 c.69.1.12 108458 2qruA 274 7.10e-19 1imjA 210 8.95e-19 c.69.1.23 71246 2qmqA 286 9.25e-19 3c8dA 403 9.37e-19 1xklA 273 1.02e-18 c.69.1.20 115410 1brtA 277 1.18e-18 c.69.1.12 34699 1hkhA 279 1.42e-18 c.69.1.12 90628 1qj4A 257 1.55e-18 c.69.1.20 34796 2bklA 695 1.89e-18 1a8sA 273 1.96e-18 c.69.1.12 34710 2o2iA 300 2.22e-18 1ehyA 294 2.37e-18 c.69.1.11 34693 2qvbA 297 2.62e-18 1mpxA 615 2.81e-18 b.18.1.13,c.69.1.21 85041,85042 1r1dA 247 2.93e-18 c.69.1.29 96813 1mj5A 302 3.07e-18 c.69.1.8 91285 1o6gA 710 4.19e-18 b.69.7.1,c.69.1.4 81087,81088 2yysA 286 5.22e-18 1y37A 304 5.28e-18 1tqhA 247 5.82e-18 c.69.1.29 107225 2gzsA 278 6.67e-18 1m33A 258 8.95e-18 c.69.1.26 78514 1lnsA 763 1.05e-17 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2pblA 262 1.39e-17 1qo7A 394 1.41e-17 c.69.1.11 34697 2psdA 318 1.50e-17 1yr2A 741 2.93e-17 1tcaA 317 4.32e-17 c.69.1.17 34726 1ju3A 583 4.42e-17 b.18.1.13,c.69.1.21 67300,67301 2hfkA 319 8.42e-17 1ycdA 243 1.21e-16 2ogtA 498 1.85e-16 1pjaA 302 2.58e-16 c.69.1.13 94758 1cvlA 319 2.79e-16 c.69.1.18 34786 1qe3A 489 3.54e-16 c.69.1.1 34630 2rauA 354 7.34e-16 2qjwA 176 7.43e-16 1qlwA 328 7.79e-16 c.69.1.15 34722 1tca 317 1.37e-15 1ukcA 522 1.96e-15 c.69.1.17 107911 2q0xA 335 2.58e-15 1r3dA 264 2.79e-15 c.69.1.35 111680 1ei9A 279 3.43e-15 c.69.1.13 34713 1mnaA 298 4.02e-15 c.69.1.22 79322 3bdvA 191 4.23e-15 1p0iA 529 1.13e-14 c.69.1.1 93867 1ea5A 537 1.25e-14 c.69.1.1 34592 1ys1X 320 1.33e-14 1ispA 181 1.63e-14 c.69.1.18 76778 1llfA 534 2.03e-14 c.69.1.17 78094 1thgA 544 3.34e-14 c.69.1.17 34763 2qs9A 194 1.04e-13 1hplA 449 1.17e-13 b.12.1.2,c.69.1.19 23639,34787 3bixA 574 1.72e-13 1cvl 319 1.77e-13 2h7cA 542 1.99e-13 c.69.1.1 136207 1bu8A 452 2.76e-13 b.12.1.2,c.69.1.19 23647,34795 2bceA 585 3.04e-13 c.69.1.1 34625 1uxoA 192 5.15e-13 c.69.1.31 108121 2bce 581 5.77e-13 1thg 544 9.17e-13 1jmkC 230 1.19e-12 c.69.1.22 71747 2px6A 316 5.38e-12 2cb9A 244 1.21e-11 1thtA 305 1.33e-10 c.69.1.13 34711 1ivyA 452 1.18e-09 c.69.1.5 34654 2dsnA 387 8.29e-08 2z5gA 387 1.59e-06 1ac5A 483 2.32e-06 c.69.1.5 34653 1cex 214 2.70e-06 1ku0A 388 3.35e-06 c.69.1.18 72994 1uwcA 261 4.21e-06 c.69.1.17 100101 1tib 269 8.20e-06 2d80A 318 2.42e-05 1g66A 207 5.71e-05 c.69.1.30 31329 1whsA 255 9.54e-05 c.69.1.5 34649 1tibA 269 0.000161 c.69.1.17 34738 1cexA 214 0.000600 c.69.1.30 31285 2czqA 205 0.000742 2d81A 318 0.000780 3tglA 269 0.001727 c.69.1.17 34733 2oryA 346 0.005245 1edgA 380 0.1880 c.1.8.3 28807 1whsB 153 0.7920 2q7xA 326 1.275 1f0kA 364 2.328 c.87.1.2 35465 1ooeA 236 3.248 c.2.1.2 87196 2qt1A 207 3.480 1oxwA 373 4.030 c.19.1.3 87539 1o9gA 250 4.146 c.66.1.29 86692 1tk9A 188 4.747 c.80.1.3 107082 1iirA 415 6.544 c.87.1.5 62453 2bkaA 242 7.091 c.2.1.2 128666 2p91A 285 7.295 2df8A 325 7.304 3b55A 451 7.654 1moq 368 7.849 2i2wA 212 7.938 2qtwB 546 7.942 2o2zA 323 8.313 2yvaA 196 8.314 2ppwA 216 8.379 1zc6A 305 9.053 c.55.1.5,c.55.1.5 124888,124889 2ze7A 253 10.08 2e18A 257 10.78 1xgkA 352 10.89 c.2.1.2 115286 1rrmA 386 11.28 e.22.1.2 105081 2gruA 368 11.72 2yvuA 186 11.91 1p3dA 475 11.93 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2deoA 230 14.04 1kpgA 287 14.04 c.66.1.18 68735 3crrA 323 15.41 2c2nA 339 16.42 2f5xA 312 17.07 2i49A 429 20.68 2z8xA 617 20.70 2nm0A 253 21.11 2dtxA 264 21.64 1gl6A 436 21.74 c.37.1.11 70259 1hdcA 253 22.66 c.2.1.2 29862 2cb0A 333 22.81 1bd0A 388 22.86 b.49.2.2,c.1.6.1 26480,28642 1hgxA 183 22.88 c.61.1.1 34027 1vf8A 377 23.02 c.1.8.5,d.26.3.1 120029,120030 1f3lA 321 23.08 c.66.1.6 59630 2ppvA 332 23.39 1ne7A 289 24.45 c.124.1.1 91833 1h1nA 305 24.77 c.1.8.3 70855 2ywdA 191 24.91 2qmoA 220 25.68 1chd 203 25.91 2qm1A 326 25.94 1ir6A 424 26.66 c.107.1.2 71342 2vc7A 314 26.81 1eceA 358 26.93 c.1.8.3 28813 1thmA 279 27.05 c.41.1.1 32544 1b5pA 385 27.56 c.67.1.1 90403 2gasA 307 27.66 2d4wA 504 27.92 2bcoA 350 28.75 c.56.5.7 128302 1bu6O 501 29.60 c.55.1.4,c.55.1.4 33499,33500 2gf3A 389 30.25 c.3.1.2,d.16.1.3 135070,135071 2jepA 395 31.22 1v4vA 376 31.47 c.87.1.3 100313 2i87A 364 31.64 1uayA 242 32.35 c.2.1.2 88390 2masA 314 32.51 c.70.1.1 34810 2q7dA 346 33.27 1uzmA 247 33.60 c.2.1.2 119811 2bs3A 656 34.12 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1nhsA 447 34.16 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2ae2A 260 35.16 c.2.1.2 29945 1yoeA 322 35.45 2dvzA 314 36.59 1bf6A 291 36.82 c.1.9.3 29065 2ew8A 249 36.96 c.2.1.2 132447 1eny 268 37.03 1rxyA 253 37.29 c.56.2.1 98065 3b9gA 328 37.53 4uagA 437 37.67 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2b9wA 424 37.68 2gouA 365 37.95 1el5A 389 38.03 c.3.1.2,d.16.1.3 30369,37937 2ac7A 235 38.16 c.56.2.1 126543 1g5cA 170 38.61 c.53.2.1 60264 2hqsC 118 38.95 d.79.7.1 136666 1x6vA 630 39.21 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2amlA 373 39.80 3bhnA 236 40.24 1l5xA 280 40.53 c.106.1.1 77718 1uluA 261 41.63 c.2.1.2 113292 1htwA 158 41.93 c.37.1.18 71083 2c1xA 456 42.18 2iw1A 374 42.83 c.87.1.8 137738 1xrjA 261 43.04 c.37.1.6 122256 1gsjA 258 43.52 c.73.1.2 70397 1fjhA 257 44.03 c.2.1.2 29870 1w6uA 302 44.47 c.2.1.2 114288 1y8cA 246 44.56 c.66.1.43 116563 1ff9A 450 44.81 c.2.1.3,d.81.1.2 30039,39954 1ic6A 279 45.27 c.41.1.1 62257 2h7mA 269 45.37 c.2.1.2 136219 2ax4A 198 45.77 3cjpA 272 45.91 2iyaA 424 45.95 1l9cA 389 46.19 c.3.1.2,d.16.1.3 77815,77816 1eziA 228 48.42 c.68.1.13 34512 2ffeA 311 48.75 c.143.1.1 133381 2dknA 255 49.56 1nffA 260 49.57 c.2.1.2 80457 2h1yA 321 49.65 2dplA 308 50.59 2jfgA 445 51.23 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1e5kA 201 51.28 c.68.1.8 34578 3cnqS 266 51.77 1pswA 348 52.06 c.87.1.7 88287 1xu9A 286 52.70 c.2.1.2 116052 1ryiA 382 53.34 c.3.1.2,d.16.1.3 118813,118814 2ioyA 283 53.49 1fmcA 255 53.66 c.2.1.2 29856 1hdoA 206 54.61 c.2.1.2 60965 2gt1A 326 55.11 2pezA 179 55.26 2jahA 247 55.53 1x1tA 260 55.61 c.2.1.2 121597 1vkrA 125 57.54 c.44.2.1 108689 1o4sA 389 58.09 c.67.1.1 86620 1e6wA 260 58.37 c.2.1.2 59326 3cdxA 354 58.53 1k0fA 277 58.54 c.92.2.2 71974 2bsxA 253 58.60 c.56.2.1 129128 2ixtA 310 58.68 1gegA 256 58.69 c.2.1.2 29888 2pc8A 400 59.34 1w3iA 293 59.76 c.1.10.1 109152 1ydeA 270 59.90 c.2.1.2 122980 1wxiA 275 61.36 c.26.2.1 121400 1i19A 561 61.80 d.58.32.3,d.145.1.1 61522,61523 1bdbA 277 62.19 c.2.1.2 29874 2epjA 434 63.39 1geeA 261 63.84 c.2.1.2 90509 1vljA 407 63.89 e.22.1.2 108832 1or8A 340 63.95 c.66.1.6 93451 2uytA 489 64.00 1qsgA 265 64.22 c.2.1.2 29935 1zmoA 244 65.02 2egxA 269 65.10 2gpyA 233 65.61 2yzkA 178 67.34 2dvtA 327 69.86 c.1.9.15 131793 2csuA 457 69.95 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1o58A 303 69.96 c.79.1.1 92491 2e5fA 325 70.00 1mjnA 179 70.24 c.62.1.1 79210 1nhpA 447 70.52 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1ukzA 203 70.54 c.37.1.1 31840 1tcvA 287 70.60 2b6nA 278 70.72 1je0A 236 70.72 c.56.2.1 66581 3c8uA 208 71.23 1j9lA 247 71.84 c.106.1.1 62762 1i52A 236 71.89 c.68.1.13 61767 1ceo 343 72.01 1hxhA 253 72.53 c.2.1.2 76725 2d1yA 256 73.21 c.2.1.2 131151 1odkA 235 73.26 c.56.2.1 86863 2pk3A 321 73.32 3c3pA 210 73.97 8abp 306 74.20 2zf5O 497 75.20 2g29A 417 75.48 2f46A 156 75.61 2o6lA 170 75.64 1k2wA 256 75.65 c.2.1.2 90927 2v74B 346 76.12 1ri5A 298 76.28 c.66.1.34 97502 1zbqA 327 76.45 c.2.1.2 124862 2pocA 367 76.66 1wmaA 276 76.73 c.2.1.2 121042 1a8rA 221 77.96 d.96.1.1 40587 1lh0A 213 78.18 c.61.1.1 73896 1o98A 511 79.26 c.105.1.1,c.76.1.3 86684,86685 2ef5A 290 79.70 3c3dA 311 79.81 2hq1A 247 80.28 2dkfA 431 80.30 2j3hA 345 80.50 1yd9A 193 81.49 c.50.1.2 122976 2nv0A 196 81.73 c.23.16.1 138625 2z1mA 345 82.16 1i9gA 280 82.33 c.66.1.13 62090 1oapA 109 82.39 d.79.7.1 92706 2eixA 243 82.70 2phjA 251 82.73 1byi 224 82.87 2cksA 306 83.29 2qgnA 322 84.24 3cggA 195 84.31 3canA 182 84.44 2abwA 227 84.45 c.23.16.1 126535 2o23A 265 84.74 c.2.1.2 138884 7a3hA 303 85.54 c.1.8.3 28817 3c86A 328 86.40 1uu1A 335 87.38 c.67.1.1 99993 1xi9A 406 87.72 c.67.1.1 115355 1xahA 354 87.77 1kqpA 271 87.79 c.26.2.1 72883 1xw8A 252 87.82 c.6.2.5 116111 2p8uA 478 88.22 1z15A 344 88.60 2pd6A 264 88.72 1usgA 346 89.23 c.93.1.1 99864 1r64A 481 89.56 b.18.1.20,c.41.1.1 97140,97141 1t1gA 364 89.69 c.41.1.2 106246 1ceoA 343 89.91 c.1.8.3 28808