# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 2.07e-24 c.69.1.25 77772 1vlqA 337 2.41e-23 c.69.1.25 108848 1u4nA 310 4.82e-23 c.69.1.2 113021 1b6g 310 8.33e-23 1b6gA 310 9.44e-23 c.69.1.8 34661 2jbwA 386 1.17e-22 1lzlA 323 1.32e-22 c.69.1.2 78306 1wm1A 317 1.91e-22 c.69.1.7 109405 2qm0A 275 2.02e-22 1jkmA 358 2.11e-22 c.69.1.2 34633 2hdwA 367 2.27e-22 1zi8A 236 3.31e-22 2b61A 377 3.40e-22 1u2eA 289 4.02e-22 2hu5A 582 4.12e-22 b.69.7.2,c.69.1.33 136763,136764 2og1A 286 4.47e-22 1bn7A 294 5.21e-22 c.69.1.8 34677 1jfrA 262 6.26e-22 c.69.1.16 34724 2hm7A 310 6.34e-22 2b20A 403 6.56e-22 b.1.18.20,c.69.1.2 127685,127686 2o2gA 223 6.59e-22 1jjiA 311 6.61e-22 c.69.1.2 66766 1k8qA 377 7.12e-22 c.69.1.6 72177 2uz0A 263 7.79e-22 1orvA 728 9.42e-22 b.70.3.1,c.69.1.24 87354,87355 2r11A 306 9.44e-22 1din 236 1.09e-21 2z3zA 706 1.12e-21 3bdiA 207 1.14e-21 2o7rA 338 1.16e-21 1c4xA 285 1.22e-21 c.69.1.10 34684 3b5eA 223 1.24e-21 2fx5A 258 1.30e-21 2veoA 441 1.49e-21 1dqzA 280 1.61e-21 c.69.1.3 34638 1hlgA 371 1.70e-21 c.69.1.6 34656 1q0rA 298 1.78e-21 c.69.1.28 95508 1f0nA 285 1.79e-21 c.69.1.3 34636 2pujA 286 2.08e-21 3bxpA 277 2.48e-21 1vkhA 273 3.03e-21 c.69.1.32 108662 1zd3A 555 3.16e-21 c.108.1.2,c.69.1.11 124930,124931 2rhwA 283 3.18e-21 2r8bA 251 3.19e-21 1jjfA 268 4.16e-21 c.69.1.2 66765 2pl5A 366 4.30e-21 2fukA 220 5.13e-21 1auoA 218 5.63e-21 c.69.1.14 34716 2i3dA 249 5.69e-21 2puhA 286 5.69e-21 1uk8A 282 6.02e-21 c.69.1.10 107907 3c8dA 403 7.14e-21 1wb4A 297 7.56e-21 c.69.1.2 120827 2d5lA 706 7.84e-21 1mtzA 293 7.94e-21 c.69.1.7 79467 1azwA 313 8.29e-21 c.69.1.7 34658 1xqwA 293 8.77e-21 1pv1A 299 9.00e-21 c.69.1.34 111639 1h2wA 710 9.12e-21 b.69.7.1,c.69.1.4 76596,76597 1fj2A 232 1.10e-20 c.69.1.14 34720 1womA 271 1.29e-20 1ufoA 238 1.39e-20 c.69.1.27 99344 2e3jA 356 1.68e-20 1imjA 210 1.82e-20 c.69.1.23 71246 1r88A 280 1.87e-20 c.69.1.3 97219 1j1iA 296 1.95e-20 c.69.1.10 83977 2qmqA 286 1.96e-20 2ocgA 254 2.22e-20 1zoiA 276 2.48e-20 3bf7A 255 3.28e-20 2bklA 695 3.67e-20 2qruA 274 3.79e-20 2cjpA 328 5.28e-20 1brt 277 6.00e-20 1mpxA 615 6.19e-20 b.18.1.13,c.69.1.21 85041,85042 1xklA 273 7.79e-20 c.69.1.20 115410 3bwxA 285 8.63e-20 1mj5A 302 9.03e-20 c.69.1.8 91285 1a8qA 274 1.07e-19 c.69.1.12 34702 1o6gA 710 1.16e-19 b.69.7.1,c.69.1.4 81087,81088 1qj4A 257 1.25e-19 c.69.1.20 34796 2o2iA 300 1.26e-19 1brtA 277 1.29e-19 c.69.1.12 34699 1ehyA 294 1.32e-19 c.69.1.11 34693 1va4A 279 1.37e-19 c.69.1.12 108458 2gzsA 278 1.58e-19 2qvbA 297 1.70e-19 3c5vA 316 1.79e-19 1lnsA 763 2.43e-19 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2pblA 262 2.99e-19 1y37A 304 3.15e-19 2yysA 286 3.16e-19 1hkhA 279 3.79e-19 c.69.1.12 90628 1a8sA 273 4.00e-19 c.69.1.12 34710 2psdA 318 6.10e-19 1qo7A 394 7.42e-19 c.69.1.11 34697 1yr2A 741 7.52e-19 1r1dA 247 1.26e-18 c.69.1.29 96813 1ju3A 583 1.63e-18 b.18.1.13,c.69.1.21 67300,67301 1tcaA 317 1.84e-18 c.69.1.17 34726 1m33A 258 2.37e-18 c.69.1.26 78514 1tqhA 247 2.38e-18 c.69.1.29 107225 2ogtA 498 1.24e-17 1qe3A 489 1.28e-17 c.69.1.1 34630 2hfkA 319 1.50e-17 1qlwA 328 1.68e-17 c.69.1.15 34722 1ycdA 243 1.81e-17 1pjaA 302 3.34e-17 c.69.1.13 94758 1cvlA 319 5.57e-17 c.69.1.18 34786 1tca 317 8.93e-17 2qjwA 176 9.60e-17 1ukcA 522 1.08e-16 c.69.1.17 107911 2q0xA 335 1.19e-16 2rauA 354 1.93e-16 1ei9A 279 2.11e-16 c.69.1.13 34713 3bdvA 191 2.45e-16 1r3dA 264 7.22e-16 c.69.1.35 111680 1p0iA 529 1.11e-15 c.69.1.1 93867 1mnaA 298 1.16e-15 c.69.1.22 79322 1thgA 544 1.49e-15 c.69.1.17 34763 1ea5A 537 1.55e-15 c.69.1.1 34592 1llfA 534 2.02e-15 c.69.1.17 78094 1ys1X 320 2.40e-15 1ispA 181 5.80e-15 c.69.1.18 76778 2qs9A 194 1.03e-14 3bixA 574 1.81e-14 1hplA 449 1.89e-14 b.12.1.2,c.69.1.19 23639,34787 2h7cA 542 2.19e-14 c.69.1.1 136207 1thg 544 4.95e-14 1cvl 319 5.27e-14 1bu8A 452 5.92e-14 b.12.1.2,c.69.1.19 23647,34795 2bceA 585 9.65e-14 c.69.1.1 34625 2bce 581 1.16e-13 1jmkC 230 1.75e-13 c.69.1.22 71747 1uxoA 192 2.76e-13 c.69.1.31 108121 2px6A 316 1.13e-12 2cb9A 244 2.21e-12 1thtA 305 5.22e-11 c.69.1.13 34711 1ivyA 452 1.23e-10 c.69.1.5 34654 2dsnA 387 4.51e-08 1ac5A 483 3.02e-07 c.69.1.5 34653 1uwcA 261 1.12e-06 c.69.1.17 100101 1ku0A 388 1.21e-06 c.69.1.18 72994 1cex 214 2.43e-06 2z5gA 387 5.27e-06 1tib 269 5.93e-06 2d80A 318 1.27e-05 1whsA 255 3.42e-05 c.69.1.5 34649 1tibA 269 8.29e-05 c.69.1.17 34738 1g66A 207 9.58e-05 c.69.1.30 31329 2d81A 318 0.001121 2oryA 346 0.001126 2czqA 205 0.001181 3tglA 269 0.001220 c.69.1.17 34733 1cexA 214 0.001264 c.69.1.30 31285 1edgA 380 0.1074 c.1.8.3 28807 1whsB 153 0.4594 2q7xA 326 0.4984 2o2zA 323 2.513 1zc6A 305 3.250 c.55.1.5,c.55.1.5 124888,124889 1moq 368 4.142 1tk9A 188 4.668 c.80.1.3 107082 2qt1A 207 5.430 2bkaA 242 5.527 c.2.1.2 128666 2qtwB 546 5.945 2jepA 395 6.021 1o9gA 250 6.634 c.66.1.29 86692 3bhnA 236 6.963 1ooeA 236 7.069 c.2.1.2 87196 1oxwA 373 8.251 c.19.1.3 87539 2ppwA 216 8.355 3b55A 451 10.02 2f5xA 312 10.22 2gruA 368 11.11 2ze7A 253 11.54 2yvuA 186 11.93 2i49A 429 12.82 2ppvA 332 13.59 2vc7A 314 14.62 2c2nA 339 15.62 1f0kA 364 15.85 c.87.1.2 35465 1kpgA 287 16.25 c.66.1.18 68735 1eceA 358 16.96 c.1.8.3 28813 1xgkA 352 17.17 c.2.1.2 115286 2deoA 230 17.50 1gl6A 436 17.67 c.37.1.11 70259 2df8A 325 18.09 1rrmA 386 18.81 e.22.1.2 105081 3crrA 323 18.88 2i2wA 212 19.10 1p3dA 475 19.48 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2gs8A 317 19.60 2gasA 307 20.15 2j3hA 345 20.78 1w3iA 293 21.21 c.1.10.1 109152 2p91A 285 21.23 1iirA 415 21.62 c.87.1.5 62453 3cjpA 272 21.67 2yvaA 196 21.94 2q7dA 346 22.60 2z8xA 617 23.52 1h1nA 305 23.60 c.1.8.3 70855 1o58A 303 23.79 c.79.1.1 92491 2pocA 367 24.40 1v4vA 376 24.54 c.87.1.3 100313 2pc8A 400 26.69 1vf8A 377 27.01 c.1.8.5,d.26.3.1 120029,120030 2pk3A 321 28.42 1l5xA 280 28.72 c.106.1.1 77718 1x6vA 630 30.00 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3c4vA 426 30.44 3c3jA 384 31.72 2masA 314 31.97 c.70.1.1 34810 2dkfA 431 33.52 2e18A 257 33.56 1usgA 346 33.99 c.93.1.1 99864 1i9gA 280 34.54 c.66.1.13 62090 2qmoA 220 35.63 1k0fA 277 36.60 c.92.2.2 71974 2bsxA 253 37.45 c.56.2.1 129128 2dm6A 333 37.71 b.35.1.2,c.2.1.1 131567,131568 1f3lA 321 38.04 c.66.1.6 59630 2ffeA 311 38.21 c.143.1.1 133381 3b9gA 328 38.28 3cdxA 354 38.48 1byi 224 39.19 2ac7A 235 39.50 c.56.2.1 126543 1rxyA 253 39.51 c.56.2.1 98065 2bcoA 350 39.86 c.56.5.7 128302 1htwA 158 39.94 c.37.1.18 71083 1b5pA 385 39.98 c.67.1.1 90403 1gu7A 364 40.68 b.35.1.2,c.2.1.1 83321,83322 2fqxA 318 41.42 1nhpA 447 42.12 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1g5cA 170 42.52 c.53.2.1 60264 2hzbA 333 43.54 c.143.1.1 136911 1ceoA 343 44.88 c.1.8.3 28808 1h72C 296 44.89 d.14.1.5,d.58.26.1 60712,60713 2gouA 365 45.45 1bu6O 501 46.81 c.55.1.4,c.55.1.4 33499,33500 1nhsA 447 48.68 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1i52A 236 49.72 c.68.1.13 61767 1lqtA 456 49.96 c.3.1.1,c.4.1.1 74198,74199 1qgoA 264 50.07 c.92.1.2 35596 2b9wA 424 50.69 1e8cA 498 50.77 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2ywdA 191 50.79 1ryiA 382 51.30 c.3.1.2,d.16.1.3 118813,118814 1ne7A 289 51.85 c.124.1.1 91833 2cb0A 333 52.75 1eny 268 52.94 1je0A 236 53.17 c.56.2.1 66581 1jflA 228 53.61 c.78.2.1,c.78.2.1 71656,71657 1bf6A 291 54.26 c.1.9.3 29065 2f46A 156 57.23 2a3nA 355 57.67 2dplA 308 58.90 1kngA 156 59.39 c.47.1.10 72777 1vhwA 253 59.76 c.56.2.1 100706 2i87A 364 59.79 2ioyA 283 60.12 1ve1A 304 60.21 c.79.1.1 120007 1v98A 140 60.59 1tcvA 287 60.64 2gf3A 389 61.06 c.3.1.2,d.16.1.3 135070,135071 3cnqS 266 64.85 4uagA 437 65.24 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2hlsA 243 65.89 2hqsC 118 66.80 d.79.7.1 136666 1bd0A 388 66.81 b.49.2.2,c.1.6.1 26480,28642 1f2dA 341 67.89 c.79.1.1 35298 2abwA 227 69.74 c.23.16.1 126535 1m7yA 435 69.90 c.67.1.4 78761 1ir6A 424 70.02 c.107.1.2 71342 3c86A 328 70.62 2g29A 417 70.67 1tt7A 330 71.70 b.35.1.2,c.2.1.1 112623,112624 2dvzA 314 71.90 2h7mA 269 73.24 c.2.1.2 136219 2p4eA 692 73.38 1odkA 235 74.83 c.56.2.1 86863 1mla 309 75.53 1gsjA 258 76.16 c.73.1.2 70397 2v03A 303 76.40 2z1mA 345 76.67 2bllA 345 77.97 c.2.1.2 128733 1mf7A 194 78.90 c.62.1.1 84937 2bs3A 656 79.00 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2qgnA 322 79.58 1edtA 271 79.63 c.1.8.5 28993 1xw8A 252 79.95 c.6.2.5 116111 2aotA 292 80.36 c.66.1.19 127098 1s3iA 310 81.00 b.46.1.1,c.65.1.1 98435,98436 2ae2A 260 81.20 c.2.1.2 29945 1i19A 561 83.77 d.58.32.3,d.145.1.1 61522,61523 1wlyA 333 83.86 2uytA 489 84.80 1v7cA 351 84.97 c.79.1.1 100446 2amlA 373 85.63 2q5cA 196 85.99 1e0cA 271 87.10 c.46.1.2,c.46.1.2 32717,32718 1or8A 340 88.89 c.66.1.6 93451 2nm0A 253 89.11 1iz0A 302 89.18 b.35.1.2,c.2.1.1 83821,83822 1dtxA 59 89.29 g.8.1.1 44551 2epjA 434 89.52