# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 5.64e-25 c.69.1.25 77772 1vlqA 337 4.02e-24 c.69.1.25 108848 1u4nA 310 5.69e-24 c.69.1.2 113021 1lzlA 323 1.68e-23 c.69.1.2 78306 1b6g 310 2.05e-23 1b6gA 310 2.17e-23 c.69.1.8 34661 2hdwA 367 2.42e-23 1jkmA 358 2.58e-23 c.69.1.2 34633 1wm1A 317 2.68e-23 c.69.1.7 109405 2jbwA 386 3.11e-23 2qm0A 275 3.41e-23 2hu5A 582 5.69e-23 b.69.7.2,c.69.1.33 136763,136764 1u2eA 289 5.70e-23 1bn7A 294 6.49e-23 c.69.1.8 34677 2uz0A 263 6.99e-23 1zi8A 236 9.66e-23 2og1A 286 1.01e-22 2b61A 377 1.18e-22 2hm7A 310 1.18e-22 2z3zA 706 1.31e-22 1orvA 728 1.41e-22 b.70.3.1,c.69.1.24 87354,87355 2b20A 403 1.42e-22 b.1.18.20,c.69.1.2 127685,127686 1c4xA 285 1.53e-22 c.69.1.10 34684 1k8qA 377 1.55e-22 c.69.1.6 72177 2r11A 306 1.57e-22 1jfrA 262 1.65e-22 c.69.1.16 34724 2o7rA 338 1.70e-22 1hlgA 371 1.98e-22 c.69.1.6 34656 3bdiA 207 1.99e-22 1din 236 2.11e-22 1jjiA 311 2.17e-22 c.69.1.2 66766 2o2gA 223 2.23e-22 3b5eA 223 2.27e-22 1q0rA 298 3.00e-22 c.69.1.28 95508 2pujA 286 3.42e-22 2rhwA 283 3.57e-22 1vkhA 273 3.99e-22 c.69.1.32 108662 1uk8A 282 4.32e-22 c.69.1.10 107907 1zd3A 555 4.39e-22 c.108.1.2,c.69.1.11 124930,124931 2fx5A 258 4.55e-22 1f0nA 285 4.87e-22 c.69.1.3 34636 2veoA 441 5.83e-22 2puhA 286 6.49e-22 1dqzA 280 6.84e-22 c.69.1.3 34638 1azwA 313 7.21e-22 c.69.1.7 34658 2r8bA 251 7.49e-22 1jjfA 268 7.86e-22 c.69.1.2 66765 2d5lA 706 7.94e-22 2fukA 220 8.00e-22 1auoA 218 8.48e-22 c.69.1.14 34716 1mtzA 293 9.14e-22 c.69.1.7 79467 2pl5A 366 9.20e-22 3bxpA 277 9.81e-22 1womA 271 1.06e-21 1h2wA 710 1.12e-21 b.69.7.1,c.69.1.4 76596,76597 1xqwA 293 1.17e-21 3c8dA 403 1.53e-21 1fj2A 232 1.55e-21 c.69.1.14 34720 2i3dA 249 1.61e-21 1ufoA 238 1.92e-21 c.69.1.27 99344 1j1iA 296 2.19e-21 c.69.1.10 83977 1wb4A 297 2.21e-21 c.69.1.2 120827 2e3jA 356 3.10e-21 2ocgA 254 3.45e-21 1r88A 280 4.31e-21 c.69.1.3 97219 1zoiA 276 4.46e-21 1pv1A 299 4.68e-21 c.69.1.34 111639 3bf7A 255 5.02e-21 2qmqA 286 5.06e-21 1imjA 210 5.74e-21 c.69.1.23 71246 2qruA 274 6.41e-21 3bwxA 285 6.74e-21 1brt 277 6.90e-21 1a8qA 274 7.70e-21 c.69.1.12 34702 2bklA 695 8.19e-21 2cjpA 328 9.96e-21 1xklA 273 1.09e-20 c.69.1.20 115410 1va4A 279 1.09e-20 c.69.1.12 108458 1mj5A 302 1.11e-20 c.69.1.8 91285 1qj4A 257 1.42e-20 c.69.1.20 34796 3c5vA 316 1.44e-20 1o6gA 710 1.66e-20 b.69.7.1,c.69.1.4 81087,81088 2o2iA 300 1.99e-20 1brtA 277 2.14e-20 c.69.1.12 34699 1mpxA 615 2.15e-20 b.18.1.13,c.69.1.21 85041,85042 1ehyA 294 2.25e-20 c.69.1.11 34693 2qvbA 297 2.54e-20 2gzsA 278 3.38e-20 1a8sA 273 3.46e-20 c.69.1.12 34710 1lnsA 763 5.00e-20 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1y37A 304 5.73e-20 2yysA 286 6.12e-20 1hkhA 279 7.31e-20 c.69.1.12 90628 2psdA 318 8.16e-20 1qo7A 394 1.56e-19 c.69.1.11 34697 1r1dA 247 1.64e-19 c.69.1.29 96813 2pblA 262 1.72e-19 1yr2A 741 1.86e-19 1tqhA 247 2.72e-19 c.69.1.29 107225 1m33A 258 2.99e-19 c.69.1.26 78514 1ju3A 583 4.99e-19 b.18.1.13,c.69.1.21 67300,67301 1tcaA 317 2.03e-18 c.69.1.17 34726 1ycdA 243 3.54e-18 2ogtA 498 4.39e-18 2hfkA 319 4.40e-18 1qe3A 489 6.77e-18 c.69.1.1 34630 1pjaA 302 8.86e-18 c.69.1.13 94758 1qlwA 328 8.94e-18 c.69.1.15 34722 1cvlA 319 1.35e-17 c.69.1.18 34786 2rauA 354 3.91e-17 2qjwA 176 4.60e-17 1ukcA 522 4.87e-17 c.69.1.17 107911 1tca 317 7.58e-17 2q0xA 335 8.11e-17 3bdvA 191 1.04e-16 1ei9A 279 1.15e-16 c.69.1.13 34713 1r3dA 264 1.24e-16 c.69.1.35 111680 1p0iA 529 2.24e-16 c.69.1.1 93867 1mnaA 298 3.31e-16 c.69.1.22 79322 1thgA 544 3.75e-16 c.69.1.17 34763 1ea5A 537 3.87e-16 c.69.1.1 34592 1llfA 534 6.19e-16 c.69.1.17 78094 1ys1X 320 8.37e-16 1ispA 181 2.04e-15 c.69.1.18 76778 2qs9A 194 3.63e-15 3bixA 574 6.08e-15 2h7cA 542 6.89e-15 c.69.1.1 136207 1hplA 449 9.43e-15 b.12.1.2,c.69.1.19 23639,34787 2bceA 585 1.72e-14 c.69.1.1 34625 1bu8A 452 1.82e-14 b.12.1.2,c.69.1.19 23647,34795 1thg 544 2.36e-14 1cvl 319 3.28e-14 2bce 581 3.79e-14 1uxoA 192 6.75e-14 c.69.1.31 108121 1jmkC 230 8.31e-14 c.69.1.22 71747 2px6A 316 2.59e-13 2cb9A 244 1.19e-12 1thtA 305 1.79e-11 c.69.1.13 34711 1ivyA 452 5.69e-11 c.69.1.5 34654 2dsnA 387 3.00e-08 1ac5A 483 2.86e-07 c.69.1.5 34653 1uwcA 261 9.80e-07 c.69.1.17 100101 1ku0A 388 1.06e-06 c.69.1.18 72994 1cex 214 1.51e-06 2z5gA 387 3.02e-06 1tib 269 5.10e-06 2d80A 318 1.06e-05 1whsA 255 1.99e-05 c.69.1.5 34649 1tibA 269 5.83e-05 c.69.1.17 34738 1g66A 207 6.01e-05 c.69.1.30 31329 2d81A 318 0.000344 1cexA 214 0.000388 c.69.1.30 31285 3tglA 269 0.000468 c.69.1.17 34733 2czqA 205 0.000571 2oryA 346 0.001633 1edgA 380 0.1271 c.1.8.3 28807 1whsB 153 0.2801 2q7xA 326 0.6180 1moq 368 3.120 2qt1A 207 3.167 2bkaA 242 3.273 c.2.1.2 128666 1zc6A 305 3.310 c.55.1.5,c.55.1.5 124888,124889 2o2zA 323 3.429 1iirA 415 4.240 c.87.1.5 62453 2qtwB 546 4.407 2ze7A 253 5.481 3bhnA 236 5.552 1ooeA 236 5.663 c.2.1.2 87196 2c2nA 339 5.821 2ppwA 216 5.984 1oxwA 373 6.390 c.19.1.3 87539 1f0kA 364 6.832 c.87.1.2 35465 1tk9A 188 7.175 c.80.1.3 107082 1o9gA 250 7.355 c.66.1.29 86692 1p3dA 475 7.377 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 3b55A 451 7.681 2jepA 395 9.420 2yvuA 186 10.25 2q7dA 346 10.36 1rrmA 386 10.82 e.22.1.2 105081 2gruA 368 10.93 1htwA 158 12.10 c.37.1.18 71083 2vc7A 314 13.12 1kpgA 287 13.16 c.66.1.18 68735 1b5pA 385 13.36 c.67.1.1 90403 1bu6O 501 13.41 c.55.1.4,c.55.1.4 33499,33500 2j3hA 345 14.33 2ppvA 332 14.85 3crrA 323 14.89 2f5xA 312 14.95 2df8A 325 15.69 3cjpA 272 16.04 3c4vA 426 16.28 2i2wA 212 16.37 1o58A 303 16.80 c.79.1.1 92491 2gs8A 317 18.21 2p91A 285 18.62 2d4wA 504 18.80 1xgkA 352 19.52 c.2.1.2 115286 2gasA 307 19.66 2z8xA 617 20.80 2qmoA 220 21.37 2yvaA 196 21.85 2i49A 429 22.97 1w3iA 293 25.15 c.1.10.1 109152 1v4vA 376 25.68 c.87.1.3 100313 2ac7A 235 26.50 c.56.2.1 126543 1bf6A 291 27.79 c.1.9.3 29065 2pk3A 321 28.14 2fqxA 318 28.88 1vf8A 377 30.13 c.1.8.5,d.26.3.1 120029,120030 2f46A 156 30.43 1eceA 358 30.97 c.1.8.3 28813 1g5cA 170 30.99 c.53.2.1 60264 2gt1A 326 31.02 1gsjA 258 31.11 c.73.1.2 70397 1h1nA 305 32.74 c.1.8.3 70855 1thmA 279 33.08 c.41.1.1 32544 2pocA 367 33.38 2e18A 257 33.62 2hqsC 118 34.16 d.79.7.1 136666 1gl6A 436 35.20 c.37.1.11 70259 3c86A 328 35.27 2gouA 365 35.75 2deoA 230 35.79 2dvzA 314 36.38 1v98A 140 37.56 2masA 314 37.70 c.70.1.1 34810 1l5xA 280 38.70 c.106.1.1 77718 1rxyA 253 38.90 c.56.2.1 98065 1f3lA 321 39.38 c.66.1.6 59630 2bsxA 253 39.69 c.56.2.1 129128 2csuA 457 40.64 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1x6vA 630 41.02 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1eziA 228 41.23 c.68.1.13 34512 2ffeA 311 41.50 c.143.1.1 133381 1eny 268 41.82 1je0A 236 42.43 c.56.2.1 66581 2dm6A 333 42.51 b.35.1.2,c.2.1.1 131567,131568 2ew2A 316 42.76 1ceoA 343 42.94 c.1.8.3 28808 2cb0A 333 43.34 2bcoA 350 45.07 c.56.5.7 128302 1hdcA 253 45.34 c.2.1.2 29862 1e6uA 321 45.37 c.2.1.2 29805 2eihA 343 45.58 2dkfA 431 45.68 2gf3A 389 47.00 c.3.1.2,d.16.1.3 135070,135071 2c1xA 456 47.35 1h72C 296 47.39 d.14.1.5,d.58.26.1 60712,60713 1k0fA 277 47.56 c.92.2.2 71974 1qwjA 229 47.62 c.68.1.13 96478 2ywdA 191 47.65 1i19A 561 49.66 d.58.32.3,d.145.1.1 61522,61523 3cnqS 266 50.51 2a3nA 355 51.36 2iyaA 424 51.93 1xrjA 261 51.99 c.37.1.6 122256 1xw8A 252 52.00 c.6.2.5 116111 1vhwA 253 52.52 c.56.2.1 100706 1o89A 345 52.70 b.35.1.2,c.2.1.1 92644,92645 2ae2A 260 52.71 c.2.1.2 29945 2qgnA 322 53.30 1ryiA 382 53.41 c.3.1.2,d.16.1.3 118813,118814 1uzmA 247 54.24 c.2.1.2 119811 1usgA 346 54.79 c.93.1.1 99864 1wlyA 333 54.93 1m7yA 435 56.62 c.67.1.4 78761 3c1oA 321 57.19 2i87A 364 58.03 1pswA 348 58.43 c.87.1.7 88287 1byi 224 59.35 2uytA 489 59.51 4uagA 437 59.72 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1nhsA 447 60.43 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ir6A 424 60.56 c.107.1.2 71342 1z06A 189 60.96 c.37.1.8 124301 2h7mA 269 62.08 c.2.1.2 136219 2epjA 434 62.95 1odkA 235 63.70 c.56.2.1 86863 2ax4A 198 63.73 2iw1A 374 63.92 c.87.1.8 137738 1i52A 236 64.45 c.68.1.13 61767 2ioyA 283 64.87 2pw6A 271 65.39 1rzuA 485 65.63 c.87.1.8 105140 2hy7A 406 65.78 1ve5A 311 66.00 c.79.1.1 120013 1z15A 344 66.57 1mf7A 194 67.23 c.62.1.1 84937 1zmoA 244 67.45 1ymgA 263 67.86 2b9wA 424 68.38 3c3jA 384 68.46 2dtxA 264 68.65 1yb4A 295 69.64 3b9gA 328 70.02 2v03A 303 70.04 1qgoA 264 70.09 c.92.1.2 35596 1kngA 156 70.58 c.47.1.10 72777 2zf5O 497 71.51 2b6nA 278 71.65 2dplA 308 72.24 1xu9A 286 72.45 c.2.1.2 116052 1iz0A 302 72.93 b.35.1.2,c.2.1.1 83821,83822 2pc8A 400 73.46 1or8A 340 73.85 c.66.1.6 93451 1w6uA 302 74.40 c.2.1.2 114288 2cksA 306 74.92 2qm1A 326 76.43 1vicA 262 76.52 c.68.1.13 100756 2odtX 328 76.69 1a7jA 290 77.85 c.37.1.6 31952 1nhpA 447 77.93 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1uayA 242 78.62 c.2.1.2 88390 2bs3A 656 79.16 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1e5kA 201 80.44 c.68.1.8 34578 2p3rA 510 80.48 c.55.1.4,c.55.1.4 139471,139472 2hzbA 333 80.80 c.143.1.1 136911 1zx0A 236 82.25 c.66.1.16 125757 2nm0A 253 82.78 2ihtA 573 83.12 2q5cA 196 83.76 1ne7A 289 83.77 c.124.1.1 91833 3cdxA 354 84.45 1chd 203 84.55 2jahA 247 84.62 1ukzA 203 84.77 c.37.1.1 31840 1ve1A 304 84.98 c.79.1.1 120007 1tcvA 287 85.57 2gjsA 176 86.42 c.37.1.8 135287 1j32A 388 87.44 c.67.1.1 77067 2ef5A 290 87.70 1o4sA 389 87.73 c.67.1.1 86620 2p4eA 692 88.03 2cuyA 305 88.19 1uluA 261 89.56 c.2.1.2 113292 1jflA 228 89.77 c.78.2.1,c.78.2.1 71656,71657 2f9sA 151 89.98 c.47.1.10 133168