# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1zi8A 236 7.30e-16 1din 236 1.62e-15 1b6gA 310 1.88e-15 c.69.1.8 34661 1b6g 310 2.44e-15 1l7aA 318 2.57e-15 c.69.1.25 77772 2i3dA 249 2.83e-15 2b61A 377 3.01e-15 1q0rA 298 3.08e-15 c.69.1.28 95508 1u4nA 310 3.52e-15 c.69.1.2 113021 2o2gA 223 4.09e-15 3bdiA 207 5.09e-15 3b5eA 223 5.77e-15 1wm1A 317 5.80e-15 c.69.1.7 109405 2jbwA 386 6.19e-15 2e3jA 356 6.67e-15 1ufoA 238 6.73e-15 c.69.1.27 99344 1bn7A 294 6.80e-15 c.69.1.8 34677 1k8qA 377 7.43e-15 c.69.1.6 72177 1c4xA 285 7.55e-15 c.69.1.10 34684 2qm0A 275 8.14e-15 1fj2A 232 8.74e-15 c.69.1.14 34720 1jfrA 262 8.99e-15 c.69.1.16 34724 1zd3A 555 9.56e-15 c.108.1.2,c.69.1.11 124930,124931 1hlgA 371 9.74e-15 c.69.1.6 34656 2pujA 286 9.98e-15 2hdwA 367 1.02e-14 1u2eA 289 1.11e-14 2pl5A 366 1.11e-14 1womA 271 1.15e-14 2ocgA 254 1.17e-14 1azwA 313 1.45e-14 c.69.1.7 34658 1auoA 218 1.50e-14 c.69.1.14 34716 3bxpA 277 1.69e-14 2rhwA 283 1.72e-14 2o7rA 338 1.74e-14 2fukA 220 1.80e-14 2r11A 306 1.84e-14 1f0nA 285 1.86e-14 c.69.1.3 34636 2uz0A 263 2.02e-14 1imjA 210 2.12e-14 c.69.1.23 71246 2qruA 274 2.16e-14 1lzlA 323 2.56e-14 c.69.1.2 78306 1mtzA 293 2.65e-14 c.69.1.7 79467 2puhA 286 2.75e-14 1vlqA 337 2.82e-14 c.69.1.25 108848 2cjpA 328 2.88e-14 1xqwA 293 2.88e-14 1zoiA 276 2.88e-14 1pv1A 299 3.00e-14 c.69.1.34 111639 2og1A 286 3.01e-14 1j1iA 296 3.07e-14 c.69.1.10 83977 2z3zA 706 3.08e-14 1uk8A 282 3.14e-14 c.69.1.10 107907 1vkhA 273 3.14e-14 c.69.1.32 108662 3bwxA 285 3.19e-14 1jkmA 358 3.51e-14 c.69.1.2 34633 3bf7A 255 3.60e-14 2fx5A 258 3.65e-14 2hm7A 310 4.12e-14 1va4A 279 4.28e-14 c.69.1.12 108458 2d5lA 706 4.85e-14 1wb4A 297 5.59e-14 c.69.1.2 120827 1dqzA 280 6.47e-14 c.69.1.3 34638 2r8bA 251 7.35e-14 1y37A 304 7.37e-14 2qmqA 286 7.77e-14 2b20A 403 7.98e-14 b.1.18.20,c.69.1.2 127685,127686 1a8qA 274 8.01e-14 c.69.1.12 34702 1r1dA 247 8.32e-14 c.69.1.29 96813 1jjfA 268 8.44e-14 c.69.1.2 66765 1orvA 728 8.87e-14 b.70.3.1,c.69.1.24 87354,87355 1r88A 280 8.92e-14 c.69.1.3 97219 3c5vA 316 9.35e-14 1jjiA 311 1.01e-13 c.69.1.2 66766 2pblA 262 1.05e-13 1mj5A 302 1.13e-13 c.69.1.8 91285 1tqhA 247 1.30e-13 c.69.1.29 107225 1brt 277 1.54e-13 2hu5A 582 1.69e-13 b.69.7.2,c.69.1.33 136763,136764 3c8dA 403 1.77e-13 1ehyA 294 1.95e-13 c.69.1.11 34693 2psdA 318 2.05e-13 2yysA 286 2.27e-13 2qvbA 297 2.44e-13 1qj4A 257 2.84e-13 c.69.1.20 34796 1a8sA 273 3.03e-13 c.69.1.12 34710 1xklA 273 3.15e-13 c.69.1.20 115410 2gzsA 278 3.61e-13 2o2iA 300 3.99e-13 1brtA 277 5.27e-13 c.69.1.12 34699 1hkhA 279 5.63e-13 c.69.1.12 90628 2veoA 441 5.83e-13 1m33A 258 5.90e-13 c.69.1.26 78514 2hfkA 319 6.72e-13 1mpxA 615 7.92e-13 b.18.1.13,c.69.1.21 85041,85042 1ju3A 583 9.37e-13 b.18.1.13,c.69.1.21 67300,67301 1qo7A 394 1.43e-12 c.69.1.11 34697 2bklA 695 3.54e-12 2q0xA 335 4.38e-12 1ycdA 243 5.37e-12 1tcaA 317 5.63e-12 c.69.1.17 34726 1qlwA 328 6.72e-12 c.69.1.15 34722 1h2wA 710 7.21e-12 b.69.7.1,c.69.1.4 76596,76597 1o6gA 710 9.92e-12 b.69.7.1,c.69.1.4 81087,81088 1mnaA 298 1.35e-11 c.69.1.22 79322 1r3dA 264 1.41e-11 c.69.1.35 111680 2rauA 354 2.13e-11 1tca 317 3.16e-11 2ogtA 498 3.76e-11 1pjaA 302 3.81e-11 c.69.1.13 94758 2qjwA 176 3.84e-11 1qe3A 489 3.84e-11 c.69.1.1 34630 3bdvA 191 5.48e-11 1ei9A 279 6.63e-11 c.69.1.13 34713 1yr2A 741 8.94e-11 1cvlA 319 9.31e-11 c.69.1.18 34786 1ys1X 320 1.75e-10 1ukcA 522 2.45e-10 c.69.1.17 107911 1hplA 449 3.36e-10 b.12.1.2,c.69.1.19 23639,34787 1ispA 181 4.43e-10 c.69.1.18 76778 1ea5A 537 4.56e-10 c.69.1.1 34592 1bu8A 452 4.61e-10 b.12.1.2,c.69.1.19 23647,34795 1p0iA 529 4.76e-10 c.69.1.1 93867 1lnsA 763 5.76e-10 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2qs9A 194 7.65e-10 2px6A 316 1.12e-09 1jmkC 230 1.53e-09 c.69.1.22 71747 1cvl 319 2.42e-09 1llfA 534 2.99e-09 c.69.1.17 78094 1thgA 544 3.39e-09 c.69.1.17 34763 3bixA 574 7.75e-09 2h7cA 542 1.04e-08 c.69.1.1 136207 2cb9A 244 1.07e-08 2bceA 585 1.09e-08 c.69.1.1 34625 1thtA 305 1.58e-08 c.69.1.13 34711 2bce 581 1.76e-08 1uxoA 192 3.95e-08 c.69.1.31 108121 1thg 544 7.69e-08 1ivyA 452 9.13e-07 c.69.1.5 34654 1ac5A 483 3.79e-05 c.69.1.5 34653 2dsnA 387 5.06e-05 1cex 214 6.66e-05 2z5gA 387 7.59e-05 1ku0A 388 0.000249 c.69.1.18 72994 2d80A 318 0.000598 1uwcA 261 0.001218 c.69.1.17 100101 1cexA 214 0.002190 c.69.1.30 31285 1tib 269 0.003508 1g66A 207 0.004774 c.69.1.30 31329 1whsA 255 0.01087 c.69.1.5 34649 2d81A 318 0.01167 2czqA 205 0.01516 2oryA 346 0.01655 1tibA 269 0.01724 c.69.1.17 34738 3tglA 269 0.03148 c.69.1.17 34733 1edgA 380 0.4992 c.1.8.3 28807 1whsB 153 2.457 1ir6A 424 2.932 c.107.1.2 71342 2c2nA 339 3.630 2jepA 395 4.931 1iirA 415 5.798 c.87.1.5 62453 2r6r1 338 6.765 2bcoA 350 7.059 c.56.5.7 128302 2c1xA 456 7.155 1f0kA 364 7.675 c.87.1.2 35465 2df8A 325 7.756 1l5xA 280 8.381 c.106.1.1 77718 2cuyA 305 9.039 2vchA 480 9.374 1o9gA 250 9.719 c.66.1.29 86692 1j9lA 247 10.99 c.106.1.1 62762 2c40A 312 11.00 2iyaA 424 11.01 2phjA 251 11.25 3cdxA 354 11.38 2p6pA 384 12.04 3b9gA 328 13.19 1tvnA 293 13.21 c.1.8.3 119360 1h72C 296 13.22 d.14.1.5,d.58.26.1 60712,60713 1moq 368 13.36 1kpgA 287 14.74 c.66.1.18 68735 2qtwB 546 16.14 1bu6O 501 16.56 c.55.1.4,c.55.1.4 33499,33500 1v4vA 376 16.61 c.87.1.3 100313 1vf8A 377 17.03 c.1.8.5,d.26.3.1 120029,120030 1oxwA 373 18.07 c.19.1.3 87539 2d4wA 504 20.65 1zmoA 244 20.84 2h1yA 321 21.63 3b55A 451 22.46 2p91A 285 22.95 1zbqA 327 23.21 c.2.1.2 124862 1rq2A 382 23.51 c.32.1.1,d.79.2.1 105048,105049 2ae2A 260 23.85 c.2.1.2 29945 3c8uA 208 24.12 1vjtA 483 24.51 c.2.1.5,d.162.1.2 100833,100834 1d7oA 297 24.65 c.2.1.2 29907 1nm2A 317 24.90 c.19.1.1,d.58.23.1 80654,80655 1wraA 308 25.10 d.157.1.8 121190 2amlA 373 25.11 2f5xA 312 25.97 2iyfA 430 26.84 2masA 314 27.07 c.70.1.1 34810 2oosA 338 27.25 1edtA 271 27.27 c.1.8.5 28993 1w3iA 293 27.47 c.1.10.1 109152 2acvA 463 27.71 2z8xA 617 27.74 2yvdA 431 28.18 3co4A 312 28.30 1yoeA 322 28.67 3crrA 323 29.40 1qgoA 264 29.57 c.92.1.2 35596 1ooeA 236 29.68 c.2.1.2 87196 1h5qA 265 29.77 c.2.1.2 60643 1uluA 261 30.39 c.2.1.2 113292 2dtxA 264 31.01 2g29A 417 31.41 1gl6A 436 32.02 c.37.1.11 70259 1pwxA 254 32.78 c.2.1.2 95262 3ca8A 266 33.75 2e6cA 244 34.53 1fmcA 255 34.61 c.2.1.2 29856 2jfnA 285 35.11 1i19A 561 35.12 d.58.32.3,d.145.1.1 61522,61523 1v6tA 255 35.14 c.6.2.5 113550 1zmtA 254 35.58 c.2.1.2 125363 1hdcA 253 36.09 c.2.1.2 29862 2jahA 247 36.61 2qj8A 332 36.76 1g0cA 364 37.15 c.1.8.3 60165 3c3pA 210 38.15 2o2yA 349 38.22 c.2.1.2 138894 2qgmA 445 38.91 1cjcA 460 39.49 c.3.1.1,c.4.1.1 30319,30604 2e5fA 325 39.69 1w5fA 353 39.70 c.32.1.1,d.79.2.1 114247,114248 2ph3A 245 39.93 3bzwA 274 40.50 1uzmA 247 40.55 c.2.1.2 119811 1moqA 368 40.89 c.80.1.1 35302 1pswA 348 41.27 c.87.1.7 88287 2vapA 364 41.72 1hp1A 516 42.72 d.114.1.1,d.159.1.2 70976,70977 2cfcA 250 42.88 2pq6A 482 42.98 1qnrA 344 43.03 c.1.8.3 28834 2dkfA 431 43.04 1y8cA 246 43.22 c.66.1.43 116563 2yvuA 186 43.57 1e7wA 291 43.81 c.2.1.2 59373 1xrjA 261 43.81 c.37.1.6 122256 2pocA 367 43.99 2zf5O 497 44.19 1wkyA 464 44.72 b.18.1.31,c.1.8.3 120992,120993 1gegA 256 45.80 c.2.1.2 29888 2ef5A 290 45.99 1vl8A 267 46.99 c.2.1.2 108733 2p4hX 322 47.03 1x1tA 260 47.09 c.2.1.2 121597 2i7vA 459 47.50 1mlaA 309 47.78 c.19.1.1,d.58.23.1 31031,39383 2r91A 286 47.83 2nm0A 253 47.98 1lqtA 456 49.01 c.3.1.1,c.4.1.1 74198,74199 1eceA 358 49.25 c.1.8.3 28813 1c93A 265 49.38 c.1.8.5 28998 1wx1A 335 50.19 2btoA 473 50.35 1kicA 339 50.51 c.70.1.1 72510 1w6uA 302 50.63 c.2.1.2 114288 2ekpA 239 50.95 1xgkA 352 51.96 c.2.1.2 115286 1x7gA 261 51.99 c.2.1.2 114929 1eny 268 52.32 2h7mA 269 52.48 c.2.1.2 136219 2dfaA 250 53.13 c.6.2.5 131469 1dl5A 317 53.55 c.66.1.7,d.197.1.1 64720,64721 1xu9A 286 53.57 c.2.1.2 116052 1mjnA 179 53.72 c.62.1.1 79210 2bgkA 278 53.86 c.2.1.2 128480 1mla 309 53.91 2p3rA 510 53.96 c.55.1.4,c.55.1.4 139471,139472 1qsgA 265 54.06 c.2.1.2 29935 1jndA 420 54.20 c.1.8.5,d.26.3.1 71757,71758 1ooyA 481 54.87 c.124.1.3,c.124.1.2 93388,93389 7a3hA 303 55.63 c.1.8.3 28817 1nffA 260 56.52 c.2.1.2 80457 1nijA 318 57.07 c.37.1.10,d.237.1.1 85741,85742 2cl5A 221 57.10 c.66.1.1 130570 1byiA 224 58.16 c.37.1.10 32199 1oj4A 283 58.19 d.14.1.5,d.58.26.5 93083,93084 2ew8A 249 58.20 c.2.1.2 132447 2f9sA 151 58.28 c.47.1.10 133168 1wohA 305 58.60 c.42.1.1 109446 2dejA 350 58.63 2i49A 429 58.68 1a7jA 290 59.77 c.37.1.6 31952 1rrvA 416 60.15 c.87.1.5 105083 1zl0A 311 60.17 c.8.10.1,c.23.16.7 125231,125232 1xfkA 336 60.51 c.42.1.1 115264 2v9dA 343 60.52 1h1nA 305 60.64 c.1.8.3 70855 2qmoA 220 60.65 1vhqA 232 60.66 c.23.16.2 100696 1x1eA 239 60.85 3ch0A 272 61.10 1vhwA 253 61.15 c.56.2.1 100706 2aebA 322 61.76 c.42.1.1 126617 2am1A 454 61.85 2dwuA 276 62.20 1kkhA 317 62.51 d.14.1.5,d.58.26.3 72645,72646 1j93A 353 63.58 c.1.22.1 66454 2gasA 307 63.89 3c3jA 384 64.20 1d3vA 323 64.33 c.42.1.1 32559 2cb0A 333 65.58 1f3lA 321 66.01 c.66.1.6 59630 2d1yA 256 66.80 c.2.1.2 131151 1q8fA 313 67.18 c.70.1.1 96203 1ukzA 203 67.34 c.37.1.1 31840 1o7jA 327 67.97 c.88.1.1 81140 2a4kA 263 68.06 c.2.1.2 126156 1uayA 242 68.38 c.2.1.2 88390 2p4eA 692 69.07 1a7j 290 69.66 2qgnA 322 69.81 1uxjA 309 70.23 c.2.1.5,d.162.1.1 108112,108113 1r59O 505 70.79 c.55.1.4,c.55.1.4 111697,111698 1e6wA 260 71.18 c.2.1.2 59326 2ch5A 347 71.21 c.55.1.5,c.55.1.5 130453,130454 2epjA 434 71.29 1fcdA 401 71.47 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1w4xA 542 72.20 c.3.1.5,c.3.1.5 109171,109172 1uteA 313 72.64 d.159.1.1 42078 1gsjA 258 72.97 c.73.1.2 70397 1bdbA 277 74.33 c.2.1.2 29874 1iy8A 267 74.45 c.2.1.2 83774 2aqjA 538 74.46 1ybdA 239 75.05 c.73.1.3 122884 1xw8A 252 75.17 c.6.2.5 116111 2oi2A 292 75.74 2a1fA 247 76.24 c.73.1.3 125991 2c5aA 379 77.33 c.2.1.2 129894 1hdhA 536 77.47 c.76.1.2 65805 1uhgA 385 77.90 e.1.1.1 88491 1szqA 483 78.38 e.44.1.1 99045 1geeA 261 78.60 c.2.1.2 90509 2pg9A 337 78.73 1k2wA 256 79.48 c.2.1.2 90927 1l6rA 227 79.55 c.108.1.10 77768 2pzmA 330 79.81 2j4jA 226 80.78 2ax4A 198 80.86 2egxA 269 82.06 1zemA 262 82.32 c.2.1.2 124984 1zk4A 251 82.85 c.2.1.2 125176 2bs3A 656 83.46 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2fexA 188 83.67 c.23.16.2 133354 1yw4A 341 84.15 c.56.5.7 124131 1k47A 337 84.62 d.14.1.5,d.58.26.4 72040,72041 2pnfA 248 85.29 3cgvA 397 85.75 1j1nA 492 87.15 c.94.1.1 83978 1t70A 255 87.26 d.159.1.9 112275 1bdb 277 88.36 1ja9A 274 88.59 c.2.1.2 62817 2p90A 319 88.81