# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 7.81e-18 c.69.1.25 77772 2jbwA 386 2.96e-17 1b6g 310 4.02e-17 1b6gA 310 4.64e-17 c.69.1.8 34661 1zi8A 236 5.29e-17 2hdwA 367 6.35e-17 1vlqA 337 9.76e-17 c.69.1.25 108848 1u4nA 310 1.05e-16 c.69.1.2 113021 3bdiA 207 1.20e-16 1din 236 1.30e-16 1jfrA 262 1.37e-16 c.69.1.16 34724 1k8qA 377 1.38e-16 c.69.1.6 72177 1lzlA 323 1.39e-16 c.69.1.2 78306 2z3zA 706 1.43e-16 2qm0A 275 1.72e-16 2o2gA 223 1.79e-16 2b61A 377 1.85e-16 1u2eA 289 1.91e-16 1fj2A 232 1.95e-16 c.69.1.14 34720 2i3dA 249 2.00e-16 2r11A 306 2.10e-16 2d5lA 706 2.18e-16 1wm1A 317 2.28e-16 c.69.1.7 109405 3bxpA 277 2.33e-16 2pujA 286 2.37e-16 2rhwA 283 2.50e-16 3b5eA 223 2.56e-16 1bn7A 294 2.68e-16 c.69.1.8 34677 1hlgA 371 2.77e-16 c.69.1.6 34656 2og1A 286 2.79e-16 2fx5A 258 3.04e-16 1uk8A 282 3.39e-16 c.69.1.10 107907 1c4xA 285 3.42e-16 c.69.1.10 34684 1q0rA 298 3.46e-16 c.69.1.28 95508 2puhA 286 3.57e-16 2o7rA 338 3.69e-16 2uz0A 263 3.83e-16 1jkmA 358 3.87e-16 c.69.1.2 34633 1orvA 728 4.43e-16 b.70.3.1,c.69.1.24 87354,87355 2hu5A 582 4.61e-16 b.69.7.2,c.69.1.33 136763,136764 2ocgA 254 4.84e-16 2b20A 403 5.27e-16 b.1.18.20,c.69.1.2 127685,127686 1zoiA 276 5.44e-16 1zd3A 555 6.12e-16 c.108.1.2,c.69.1.11 124930,124931 1azwA 313 6.53e-16 c.69.1.7 34658 2fukA 220 6.65e-16 1imjA 210 6.73e-16 c.69.1.23 71246 1f0nA 285 6.74e-16 c.69.1.3 34636 2e3jA 356 7.42e-16 2pl5A 366 7.44e-16 1vkhA 273 8.31e-16 c.69.1.32 108662 2hm7A 310 8.78e-16 1ufoA 238 9.76e-16 c.69.1.27 99344 1womA 271 1.05e-15 1mtzA 293 1.11e-15 c.69.1.7 79467 1jjfA 268 1.17e-15 c.69.1.2 66765 1auoA 218 1.21e-15 c.69.1.14 34716 1j1iA 296 1.22e-15 c.69.1.10 83977 2veoA 441 1.32e-15 2r8bA 251 1.32e-15 1jjiA 311 1.43e-15 c.69.1.2 66766 2cjpA 328 1.58e-15 1va4A 279 1.82e-15 c.69.1.12 108458 2qruA 274 2.03e-15 3c8dA 403 2.05e-15 1xqwA 293 2.06e-15 1pv1A 299 2.35e-15 c.69.1.34 111639 1brt 277 2.54e-15 3bf7A 255 2.88e-15 3bwxA 285 2.96e-15 2qmqA 286 3.05e-15 1a8qA 274 3.54e-15 c.69.1.12 34702 1tqhA 247 3.79e-15 c.69.1.29 107225 1a8sA 273 3.94e-15 c.69.1.12 34710 1wb4A 297 4.07e-15 c.69.1.2 120827 1r1dA 247 4.53e-15 c.69.1.29 96813 1r88A 280 4.68e-15 c.69.1.3 97219 3c5vA 316 4.73e-15 1mj5A 302 4.91e-15 c.69.1.8 91285 2pblA 262 5.45e-15 2o2iA 300 6.11e-15 1y37A 304 7.76e-15 2qvbA 297 7.83e-15 1dqzA 280 8.69e-15 c.69.1.3 34638 1brtA 277 1.15e-14 c.69.1.12 34699 1ehyA 294 1.17e-14 c.69.1.11 34693 1hkhA 279 1.25e-14 c.69.1.12 90628 2gzsA 278 1.30e-14 1h2wA 710 1.41e-14 b.69.7.1,c.69.1.4 76596,76597 1mpxA 615 1.43e-14 b.18.1.13,c.69.1.21 85041,85042 1xklA 273 1.58e-14 c.69.1.20 115410 2bklA 695 1.71e-14 1qo7A 394 2.38e-14 c.69.1.11 34697 2yysA 286 2.66e-14 2psdA 318 3.14e-14 1ju3A 583 3.17e-14 b.18.1.13,c.69.1.21 67300,67301 1o6gA 710 4.95e-14 b.69.7.1,c.69.1.4 81087,81088 1m33A 258 5.61e-14 c.69.1.26 78514 1qj4A 257 5.89e-14 c.69.1.20 34796 2hfkA 319 6.46e-14 1yr2A 741 2.28e-13 1qlwA 328 3.86e-13 c.69.1.15 34722 1tcaA 317 4.57e-13 c.69.1.17 34726 1ycdA 243 4.59e-13 2ogtA 498 4.70e-13 1qe3A 489 5.26e-13 c.69.1.1 34630 1lnsA 763 6.59e-13 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2qjwA 176 1.27e-12 1r3dA 264 1.54e-12 c.69.1.35 111680 2rauA 354 1.55e-12 2q0xA 335 1.62e-12 1mnaA 298 3.47e-12 c.69.1.22 79322 1tca 317 3.81e-12 1ukcA 522 4.64e-12 c.69.1.17 107911 1ea5A 537 5.20e-12 c.69.1.1 34592 1pjaA 302 7.98e-12 c.69.1.13 94758 1p0iA 529 8.48e-12 c.69.1.1 93867 1cvlA 319 1.02e-11 c.69.1.18 34786 3bdvA 191 1.52e-11 1llfA 534 1.65e-11 c.69.1.17 78094 1ispA 181 5.02e-11 c.69.1.18 76778 1thgA 544 5.09e-11 c.69.1.17 34763 1ei9A 279 7.48e-11 c.69.1.13 34713 3bixA 574 7.91e-11 2h7cA 542 8.53e-11 c.69.1.1 136207 2qs9A 194 1.41e-10 1bu8A 452 2.13e-10 b.12.1.2,c.69.1.19 23647,34795 1ys1X 320 2.15e-10 1hplA 449 2.37e-10 b.12.1.2,c.69.1.19 23639,34787 1cvl 319 2.79e-10 2bceA 585 3.07e-10 c.69.1.1 34625 2px6A 316 5.45e-10 2bce 581 7.44e-10 1uxoA 192 1.11e-09 c.69.1.31 108121 1jmkC 230 1.20e-09 c.69.1.22 71747 1thg 544 4.92e-09 1thtA 305 5.71e-09 c.69.1.13 34711 2cb9A 244 8.79e-09 1ivyA 452 2.23e-08 c.69.1.5 34654 1ac5A 483 8.02e-06 c.69.1.5 34653 2z5gA 387 6.69e-05 1cex 214 9.24e-05 2dsnA 387 0.000216 2d80A 318 0.000281 1ku0A 388 0.000371 c.69.1.18 72994 1uwcA 261 0.000464 c.69.1.17 100101 1tib 269 0.000586 1whsA 255 0.000874 c.69.1.5 34649 1cexA 214 0.001586 c.69.1.30 31285 1tibA 269 0.001715 c.69.1.17 34738 1g66A 207 0.004985 c.69.1.30 31329 3tglA 269 0.005328 c.69.1.17 34733 2d81A 318 0.007346 2oryA 346 0.009196 2czqA 205 0.01142 1edgA 380 0.2849 c.1.8.3 28807 2jepA 395 1.756 2df8A 325 2.858 7a3hA 303 3.586 c.1.8.3 28817 1tvnA 293 3.656 c.1.8.3 119360 2qtwB 546 5.720 1l5xA 280 5.880 c.106.1.1 77718 1j9lA 247 6.136 c.106.1.1 62762 2c2nA 339 6.434 1whsB 153 7.058 2pocA 367 7.604 1o9gA 250 9.719 c.66.1.29 86692 1moq 368 10.03 2phjA 251 11.31 3b55A 451 11.33 2masA 314 12.00 c.70.1.1 34810 3crrA 323 12.87 2nm0A 253 13.84 1ooeA 236 14.01 c.2.1.2 87196 1vhwA 253 14.83 c.56.2.1 100706 1qgoA 264 15.99 c.92.1.2 35596 2e6cA 244 16.17 2vc7A 314 16.90 1oxwA 373 16.99 c.19.1.3 87539 2cb0A 333 19.26 1j0aA 325 19.60 c.79.1.1 83871 2vchA 480 19.83 1g0cA 364 22.17 c.1.8.3 60165 2i87A 364 22.19 2p91A 285 22.90 1xgkA 352 23.01 c.2.1.2 115286 2qmoA 220 23.20 1edtA 271 23.60 c.1.8.5 28993 1ir6A 424 23.62 c.107.1.2 71342 1nm2A 317 23.85 c.19.1.1,d.58.23.1 80654,80655 1eceA 358 24.01 c.1.8.3 28813 2v9dA 343 24.25 1wkyA 464 24.26 b.18.1.31,c.1.8.3 120992,120993 1moqA 368 24.35 c.80.1.1 35302 3b9gA 328 25.03 1yoeA 322 25.14 2a3nA 355 25.74 2ac7A 235 26.67 c.56.2.1 126543 1wohA 305 26.73 c.42.1.1 109446 2cdcA 366 27.72 2c40A 312 27.82 1bf6A 291 29.04 c.1.9.3 29065 1byiA 224 29.04 c.37.1.10 32199 1i52A 236 29.27 c.68.1.13 61767 1mf7A 194 29.43 c.62.1.1 84937 1h5qA 265 29.59 c.2.1.2 60643 1v7cA 351 29.60 c.79.1.1 100446 1zmtA 254 29.87 c.2.1.2 125363 2r6r1 338 30.63 2uz1A 563 30.84 2h1yA 321 30.85 2ekpA 239 31.51 1uteA 313 32.55 d.159.1.1 42078 2gasA 307 32.93 1ve5A 311 33.49 c.79.1.1 120013 1uayA 242 33.56 c.2.1.2 88390 1p3dA 475 33.73 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1zmoA 244 33.78 1c93A 265 33.95 c.1.8.5 28998 1v71A 323 33.99 c.79.1.1 119859 2e5fA 325 34.53 1kpgA 287 34.82 c.66.1.18 68735 1mlaA 309 35.80 c.19.1.1,d.58.23.1 31031,39383 2j3hA 345 35.84 1uzmA 247 35.97 c.2.1.2 119811 1w3iA 293 37.06 c.1.10.1 109152 1f0kA 364 37.50 c.87.1.2 35465 2qt1A 207 38.24 2f5xA 312 39.07 1d7oA 297 39.52 c.2.1.2 29907 1q8fA 313 39.61 c.70.1.1 96203 1vf8A 377 39.69 c.1.8.5,d.26.3.1 120029,120030 1mla 309 39.77 2csuA 457 40.11 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2p4hX 322 40.23 1v6tA 255 40.41 c.6.2.5 113550 1zsxA 347 41.22 2vbfA 570 42.08 2rjoA 332 42.83 2gs8A 317 43.07 2pk3A 321 43.16 2dvtA 327 43.88 c.1.9.15 131793 2qahA 303 43.98 1hl2A 297 44.16 c.1.10.1 83581 1pwhA 327 44.39 c.79.1.1 95224 1n3yA 198 45.53 c.62.1.1 79976 1bu6O 501 45.87 c.55.1.4,c.55.1.4 33499,33500 1pixA 587 46.02 c.14.1.4,c.14.1.4 118578,118579 1y8cA 246 46.43 c.66.1.43 116563 1pwxA 254 46.97 c.2.1.2 95262 1e5kA 201 47.18 c.68.1.8 34578 1uluA 261 47.42 c.2.1.2 113292 1rxyA 253 47.66 c.56.2.1 98065 1w5fA 353 47.74 c.32.1.1,d.79.2.1 114247,114248 1xrjA 261 47.98 c.37.1.6 122256 2d4wA 504 48.10 1iz0A 302 48.33 b.35.1.2,c.2.1.1 83821,83822 1kcxA 518 48.52 b.92.1.3,c.1.9.6 90953,90954 1wraA 308 48.74 d.157.1.8 121190 1v4vA 376 50.14 c.87.1.3 100313 1x9iA 302 51.17 c.80.1.1 114997 3cdxA 354 51.27 1iirA 415 51.68 c.87.1.5 62453 1ozhA 566 51.98 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1a7jA 290 52.13 c.37.1.6 31952 1ryiA 382 53.04 c.3.1.2,d.16.1.3 118813,118814 2bcoA 350 53.04 c.56.5.7 128302 1a7j 290 53.69 2bsxA 253 54.04 c.56.2.1 129128 1ic6A 279 54.21 c.41.1.1 62257 2aamA 309 54.36 c.1.8.15 126489 2qgnA 322 54.72 1eny 268 54.79 2hxvA 360 55.01 c.71.1.2,c.97.1.2 136859,136860 1lqtA 456 55.02 c.3.1.1,c.4.1.1 74198,74199 1ionA 243 55.38 c.37.1.10 62633 2dkfA 431 55.51 1h1nA 305 56.39 c.1.8.3 70855 2r8wA 332 56.46 2h7mA 269 56.82 c.2.1.2 136219 3c8uA 208 56.91 2zbwA 335 57.80 2ze7A 253 57.98 1chd 203 58.31 2az4A 429 58.59 d.157.1.10 127597 1xkyA 301 60.57 c.1.10.1 122094 2amlA 373 60.61 3c1oA 321 62.05 2e18A 257 62.18 1yw4A 341 62.21 c.56.5.7 124131 1okgA 373 63.31 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2cksA 306 63.91 2dtxA 264 64.35 1nijA 318 64.85 c.37.1.10,d.237.1.1 85741,85742 3c86A 328 65.02 1zbqA 327 65.75 c.2.1.2 124862 2a0mA 316 66.25 c.42.1.1 125960 2o2zA 323 66.25 2i49A 429 66.86 2bw0A 329 66.90 b.46.1.1,c.65.1.1 129303,129304 2bllA 345 67.51 c.2.1.2 128733 2jahA 247 67.77 2culA 232 67.93 c.3.1.7 130813 2pi6A 361 67.99 2qgmA 445 68.54 1kqpA 271 69.57 c.26.2.1 72883 1c0pA 363 70.21 c.4.1.2,d.16.1.3 30647,37934 2dm6A 333 70.59 b.35.1.2,c.2.1.1 131567,131568 3c3jA 384 71.47 2yvdA 431 71.56 1h1dA 221 71.56 c.66.1.1 83452 1o5kA 306 71.92 c.1.10.1 92504 1exbA 332 72.03 c.1.7.1 28666 1cjcA 460 72.14 c.3.1.1,c.4.1.1 30319,30604 1atzA 189 72.42 c.62.1.1 34132 1o98A 511 73.23 c.105.1.1,c.76.1.3 86684,86685 2jfnA 285 73.28 2p8jA 209 73.42 1j0dA 341 74.51 c.79.1.1 83902 2am1A 454 75.10 2pzmA 330 75.11 2a4kA 263 75.91 c.2.1.2 126156 2i7vA 459 76.08 3ca8A 266 76.81 1on3A 523 77.46 c.14.1.4,c.14.1.4 87107,87108 1xw8A 252 77.79 c.6.2.5 116111 3bhnA 236 77.80 2nsmA 439 77.93 2pc8A 400 78.03 2jhfA 374 78.48 b.35.1.2,c.2.1.1 138314,138315 2z8xA 617 79.07 1o58A 303 79.16 c.79.1.1 92491 1zc6A 305 79.83 c.55.1.5,c.55.1.5 124888,124889 2dvzA 314 80.33 4uagA 437 80.98 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1byi 224 81.85 1shuX 182 81.89 c.62.1.1 98882 2deoA 230 82.59 2h8gA 267 82.74 2cfcA 250 82.76 1zpdA 568 84.76 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1d3gA 367 85.06 c.1.4.1 28600 2gf3A 389 85.10 c.3.1.2,d.16.1.3 135070,135071 1w6uA 302 85.16 c.2.1.2 114288 2c07A 285 86.96 c.2.1.2 129577 1y7lA 316 87.22 c.79.1.1 122695 1jndA 420 87.77 c.1.8.5,d.26.3.1 71757,71758 3bptA 363 88.78 1ybhA 590 89.65 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893