# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7aA 318 1.77e-07 c.69.1.25 77772 2i3dA 249 2.90e-07 2puhA 286 3.44e-07 2r11A 306 3.59e-07 2pujA 286 3.71e-07 1uk8A 282 3.75e-07 c.69.1.10 107907 1din 236 3.92e-07 2hdwA 367 4.08e-07 1c4xA 285 4.09e-07 c.69.1.10 34684 2og1A 286 4.14e-07 3bdiA 207 4.95e-07 2rhwA 283 5.20e-07 1zoiA 276 5.27e-07 1u2eA 289 5.66e-07 1q0rA 298 5.80e-07 c.69.1.28 95508 1a8sA 273 6.23e-07 c.69.1.12 34710 1a8qA 274 6.26e-07 c.69.1.12 34702 2b61A 377 6.51e-07 2d5lA 706 6.60e-07 2z3zA 706 6.68e-07 1zi8A 236 6.82e-07 3bwxA 285 7.25e-07 1bn7A 294 7.43e-07 c.69.1.8 34677 1hlgA 371 7.81e-07 c.69.1.6 34656 1j1iA 296 7.90e-07 c.69.1.10 83977 2hu5A 582 8.65e-07 b.69.7.2,c.69.1.33 136763,136764 2o7rA 338 9.37e-07 2e3jA 356 1.01e-06 1hkhA 279 1.08e-06 c.69.1.12 90628 1va4A 279 1.16e-06 c.69.1.12 108458 2cjpA 328 1.20e-06 2ocgA 254 1.22e-06 1ehyA 294 1.73e-06 c.69.1.11 34693 2jbwA 386 1.79e-06 1brt 277 2.18e-06 1vlqA 337 2.32e-06 c.69.1.25 108848 1b6g 310 2.49e-06 1wm1A 317 2.54e-06 c.69.1.7 109405 2fukA 220 2.58e-06 2o2gA 223 2.61e-06 1zd3A 555 2.79e-06 c.108.1.2,c.69.1.11 124930,124931 1b6gA 310 2.84e-06 c.69.1.8 34661 1jkmA 358 2.94e-06 c.69.1.2 34633 3b5eA 223 3.00e-06 1brtA 277 3.10e-06 c.69.1.12 34699 1k8qA 377 3.34e-06 c.69.1.6 72177 1mj5A 302 3.44e-06 c.69.1.8 91285 1azwA 313 3.78e-06 c.69.1.7 34658 1f0nA 285 3.86e-06 c.69.1.3 34636 2o2iA 300 3.86e-06 2uz0A 263 3.87e-06 2pl5A 366 4.65e-06 2yysA 286 4.66e-06 1jjiA 311 4.85e-06 c.69.1.2 66766 1mtzA 293 5.00e-06 c.69.1.7 79467 1auoA 218 5.28e-06 c.69.1.14 34716 1xqwA 293 5.61e-06 1lzlA 323 5.82e-06 c.69.1.2 78306 1vkhA 273 5.93e-06 c.69.1.32 108662 1jjfA 268 6.00e-06 c.69.1.2 66765 2qvbA 297 6.09e-06 1u4nA 310 6.10e-06 c.69.1.2 113021 1m33A 258 6.43e-06 c.69.1.26 78514 2psdA 318 6.54e-06 3bxpA 277 6.55e-06 2qruA 274 6.58e-06 1womA 271 6.68e-06 2hm7A 310 7.13e-06 1orvA 728 7.59e-06 b.70.3.1,c.69.1.24 87354,87355 1mpxA 615 7.65e-06 b.18.1.13,c.69.1.21 85041,85042 1fj2A 232 8.36e-06 c.69.1.14 34720 1qo7A 394 8.95e-06 c.69.1.11 34697 1imjA 210 9.44e-06 c.69.1.23 71246 1jfrA 262 1.06e-05 c.69.1.16 34724 1y37A 304 1.08e-05 1r88A 280 1.09e-05 c.69.1.3 97219 2qmqA 286 1.18e-05 2gzsA 278 1.33e-05 1ufoA 238 1.40e-05 c.69.1.27 99344 3bf7A 255 1.57e-05 1xklA 273 1.59e-05 c.69.1.20 115410 1r1dA 247 2.08e-05 c.69.1.29 96813 3c5vA 316 2.49e-05 2veoA 441 3.46e-05 2qm0A 275 3.53e-05 2r8bA 251 3.83e-05 1pv1A 299 4.16e-05 c.69.1.34 111639 1dqzA 280 4.91e-05 c.69.1.3 34638 1ju3A 583 5.01e-05 b.18.1.13,c.69.1.21 67300,67301 2b20A 403 5.11e-05 b.1.18.20,c.69.1.2 127685,127686 1qj4A 257 5.60e-05 c.69.1.20 34796 1tqhA 247 7.89e-05 c.69.1.29 107225 1r3dA 264 8.10e-05 c.69.1.35 111680 2rauA 354 8.23e-05 2bklA 695 9.34e-05 1wb4A 297 0.000108 c.69.1.2 120827 2fx5A 258 0.000145 1yr2A 741 0.000156 3c8dA 403 0.000165 2pblA 262 0.000173 1h2wA 710 0.000174 b.69.7.1,c.69.1.4 76596,76597 1p0iA 529 0.000182 c.69.1.1 93867 1o6gA 710 0.000195 b.69.7.1,c.69.1.4 81087,81088 2ogtA 498 0.000195 1qlwA 328 0.000198 c.69.1.15 34722 1qe3A 489 0.000209 c.69.1.1 34630 1ea5A 537 0.000209 c.69.1.1 34592 2q0xA 335 0.000218 3bixA 574 0.000243 2h7cA 542 0.000360 c.69.1.1 136207 2bceA 585 0.000370 c.69.1.1 34625 2qjwA 176 0.000431 1ispA 181 0.000453 c.69.1.18 76778 1pjaA 302 0.000487 c.69.1.13 94758 1ukcA 522 0.000756 c.69.1.17 107911 2bce 581 0.000989 1ycdA 243 0.001196 1thtA 305 0.001370 c.69.1.13 34711 1thgA 544 0.001371 c.69.1.17 34763 2hfkA 319 0.001947 1tcaA 317 0.002016 c.69.1.17 34726 1ivyA 452 0.002316 c.69.1.5 34654 1llfA 534 0.002428 c.69.1.17 78094 2qs9A 194 0.002521 1ys1X 320 0.002601 1uxoA 192 0.002891 c.69.1.31 108121 1cvlA 319 0.002968 c.69.1.18 34786 1thg 544 0.003176 3bdvA 191 0.003483 1ei9A 279 0.004245 c.69.1.13 34713 1cvl 319 0.004370 1tca 317 0.004555 1jmkC 230 0.004688 c.69.1.22 71747 1mnaA 298 0.006746 c.69.1.22 79322 1bu8A 452 0.01098 b.12.1.2,c.69.1.19 23647,34795 1ac5A 483 0.01344 c.69.1.5 34653 2px6A 316 0.01887 1hplA 449 0.01997 b.12.1.2,c.69.1.19 23639,34787 2cb9A 244 0.02815 1lnsA 763 0.1520 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1cex 214 0.2897 2czqA 205 0.6027 1cexA 214 0.7784 c.69.1.30 31285 1g66A 207 1.027 c.69.1.30 31329 1whsA 255 1.664 c.69.1.5 34649 2z5gA 387 2.395 3tglA 269 4.587 c.69.1.17 34733 2dsnA 387 4.817 1ku0A 388 6.761 c.69.1.18 72994 1tib 269 9.045 2o55A 258 12.67 1b26A 416 13.67 c.2.1.7,c.58.1.1 30232,33880 2d80A 318 15.53 3beoA 375 16.05 2qubA 615 16.83 2z8xA 617 17.48 1rrvA 416 17.84 c.87.1.5 105083 3ch0A 272 17.91 2d81A 318 18.79 2oryA 346 19.16 4uagA 437 19.33 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1tibA 269 19.47 c.69.1.17 34738 1dkuA 317 21.21 c.61.1.2,c.61.1.2 34118,34119 1gtmA 419 22.10 c.2.1.7,c.58.1.1 30223,33871 2pzmA 330 22.56 1b3bA 415 23.07 c.2.1.7,c.58.1.1 30244,33892 2ef5A 290 23.30 1rkxA 357 24.54 c.2.1.2 97631 2c5aA 379 26.42 c.2.1.2 129894 1vljA 407 26.70 e.22.1.2 108832 3crrA 323 27.39 2bdqA 224 28.31 1iirA 415 30.15 c.87.1.5 62453 1wraA 308 30.59 d.157.1.8 121190 2odfA 257 32.16 2gruA 368 33.50 1c1dA 355 33.55 c.2.1.7,c.58.1.1 30270,33918 2az4A 429 33.82 d.157.1.10 127597 1v4vA 376 34.65 c.87.1.3 100313 1wvgA 359 34.74 c.2.1.2 121339 2j3hA 345 34.89 1f0kA 364 34.91 c.87.1.2 35465 1zuwA 272 36.31 2dknA 255 36.42 1oj7A 408 36.74 e.22.1.2 103971 2j4jA 226 37.28 2jfgA 445 38.19 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1o2dA 371 38.96 e.22.1.2 86591 2qjjA 402 39.38 1uwcA 261 41.47 c.69.1.17 100101 1fjhA 257 44.76 c.2.1.2 29870 1d7oA 297 47.52 c.2.1.2 29907 1xw8A 252 48.17 c.6.2.5 116111 1ve1A 304 48.35 c.79.1.1 120007 1n7hA 381 50.17 c.2.1.2 80250 2qgnA 322 51.31 2pnfA 248 51.46 1vmeA 410 52.17 c.23.5.1,d.157.1.3 108893,108894 2gmwA 211 52.83 1kfcA 268 53.07 c.1.2.4 77371 2dvtA 327 53.71 c.1.9.15 131793 2qmoA 220 54.00 2e3zA 465 54.49 3buvA 326 55.33 2rfgA 297 57.17 1ja9A 274 57.17 c.2.1.2 62817 2pceA 386 58.07 3c4vA 426 58.56 4pgaA 337 59.57 c.88.1.1 35565 1exnA 290 60.25 a.60.7.1,c.120.1.2 18088,33358 1ek6A 348 60.89 c.2.1.2 29800 1to6A 371 61.17 c.141.1.1 107170 1a76A 326 61.77 a.60.7.1,c.120.1.2 18091,33361 1vd6A 224 61.88 c.1.18.3 119991 2hrdA 253 62.02 1exbA 332 62.39 c.1.7.1 28666 1vjtA 483 63.91 c.2.1.5,d.162.1.2 100833,100834 1iz0A 302 64.12 b.35.1.2,c.2.1.1 83821,83822 1xkyA 301 64.37 c.1.10.1 122094 2ashA 381 64.84 2atsA 292 64.97 c.1.10.1 127306 2yvdA 431 64.99 1tkkA 366 65.01 c.1.11.2,d.54.1.1 107089,107090 1yw4A 341 65.34 c.56.5.7 124131 2pi1A 334 65.41 1dxyA 333 65.43 c.2.1.4,c.23.12.1 30094,31354 1bgvA 449 65.50 c.2.1.7,c.58.1.1 30217,33865 1j96A 323 66.27 c.1.7.1 71616 1vkmA 297 66.48 c.138.1.1 108670 2iyfA 430 66.77 2pqmA 343 67.13 1oi7A 288 68.38 c.2.1.8,c.23.4.1 87049,87050 2pr7A 137 69.28 2dm6A 333 69.30 b.35.1.2,c.2.1.1 131567,131568 2qahA 303 70.58 2gcuA 245 70.94 2nuwA 288 74.18 1vl8A 267 74.30 c.2.1.2 108733 2ekcA 262 75.04 2o14A 375 75.11 3c8uA 208 76.14 2bmaA 470 76.25 1rrmA 386 76.96 e.22.1.2 105081 1zuaX 317 77.42 2b69A 343 79.42 c.2.1.2 127974 1hwxA 501 80.22 c.2.1.7,c.58.1.1 30250,33898 1frb 315 81.87 2zadA 345 83.01 1wb0A 445 83.02 c.1.8.5,d.26.3.1 120825,120826 1cjcA 460 83.69 c.3.1.1,c.4.1.1 30319,30604 1b43A 340 84.11 a.60.7.1,c.120.1.2 18092,33362 1gegA 256 84.56 c.2.1.2 29888 1pswA 348 84.86 c.87.1.7 88287 2hcrA 326 84.91 1poiA 317 85.21 c.124.1.2 34153 2q3bA 313 85.61 2ekpA 239 86.00 1x1eA 239 87.52 2dkfA 431 87.74 2f48A 555 87.95 c.89.1.1 132915 1wlsA 328 88.06 1ur3M 319 88.87 c.1.7.1 99806