# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 4.96e-28 2z3zA 706 2.10e-27 2hu5A 582 6.67e-27 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 6.76e-26 b.70.3.1,c.69.1.24 87354,87355 1o6gA 710 3.09e-25 b.69.7.1,c.69.1.4 81087,81088 1qfmA 710 3.40e-25 b.69.7.1,c.69.1.4 27673,34641 1xfdA 723 5.00e-25 b.70.3.1,c.69.1.24 115251,115252 1h2wA 710 6.72e-25 b.69.7.1,c.69.1.4 76596,76597 2bklA 695 1.04e-23 2uz0A 263 1.66e-23 2qm0A 275 1.89e-23 1yr2A 741 2.40e-23 3c8dA 403 3.35e-23 1vlqA 337 2.75e-22 c.69.1.25 108848 1l7aA 318 3.06e-22 c.69.1.25 77772 2jbwA 386 4.81e-22 2b20A 403 7.48e-22 b.1.18.20,c.69.1.2 127685,127686 2gzsA 278 1.17e-21 1wb4A 297 4.19e-21 c.69.1.2 120827 1pv1A 299 4.45e-21 c.69.1.34 111639 2r8bA 251 4.83e-21 3b5eA 223 6.65e-21 2i3dA 249 6.82e-21 1f0nA 285 1.00e-20 c.69.1.3 34636 1jjfA 268 1.32e-20 c.69.1.2 66765 1lzlA 323 1.41e-20 c.69.1.2 78306 2o2gA 223 2.90e-20 1fj2A 232 1.03e-19 c.69.1.14 34720 1zi8A 236 1.34e-19 2fx5A 258 1.88e-19 1ycdA 243 2.07e-19 1jfrA 262 2.56e-19 c.69.1.16 34724 1jjiA 311 6.17e-19 c.69.1.2 66766 3bxpA 277 6.59e-19 1din 236 6.72e-19 2fukA 220 6.75e-19 1auoA 218 7.43e-19 c.69.1.14 34716 1u4nA 310 1.03e-18 c.69.1.2 113021 1thg 544 1.92e-18 1dqzA 280 3.17e-18 c.69.1.3 34638 1qe3A 489 3.40e-18 c.69.1.1 34630 1r88A 280 3.84e-18 c.69.1.3 97219 1ea5A 537 6.50e-18 c.69.1.1 34592 1ufoA 238 6.96e-18 c.69.1.27 99344 1p0iA 529 1.18e-17 c.69.1.1 93867 1cleA 534 1.79e-17 c.69.1.17 34771 2hdwA 367 3.01e-17 1vkhA 273 4.02e-17 c.69.1.32 108662 1llfA 534 4.41e-17 c.69.1.17 78094 1mpxA 615 5.38e-17 b.18.1.13,c.69.1.21 85041,85042 1ukcA 522 5.75e-17 c.69.1.17 107911 2pblA 262 1.79e-15 1ju3A 583 2.83e-15 b.18.1.13,c.69.1.21 67300,67301 2bce 581 4.91e-15 2hm7A 310 9.89e-15 1imjA 210 1.32e-14 c.69.1.23 71246 1wm1A 317 2.23e-14 c.69.1.7 109405 1j1iA 296 3.74e-14 c.69.1.10 83977 1q0rA 298 4.11e-14 c.69.1.28 95508 1jkmA 358 9.52e-14 c.69.1.2 34633 1ede 310 9.73e-14 1b6g 310 1.44e-13 1va4A 279 1.46e-13 c.69.1.12 108458 1mtzA 293 1.53e-13 c.69.1.7 79467 1a88A 275 1.73e-13 c.69.1.12 34707 1qtrA 317 1.80e-13 c.69.1.7 34660 1lnsA 763 1.87e-13 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1u2eA 289 2.24e-13 1c4xA 285 2.29e-13 c.69.1.10 34684 1brt 277 2.99e-13 1k8qA 377 3.36e-13 c.69.1.6 72177 1hlgA 371 3.82e-13 c.69.1.6 34656 1uk8A 282 3.87e-13 c.69.1.10 107907 1azwA 313 4.24e-13 c.69.1.7 34658 1broA 277 4.41e-13 c.69.1.12 34700 1yasA 257 4.54e-13 c.69.1.20 34801 1ehyA 294 6.46e-13 c.69.1.11 34693 2o7rA 338 8.44e-13 1bn7A 294 8.55e-13 c.69.1.8 34677 1zd3A 555 8.95e-13 c.108.1.2,c.69.1.11 124930,124931 3bdiA 207 9.98e-13 1tqhA 247 1.28e-12 c.69.1.29 107225 1womA 271 1.98e-12 1qj4A 257 2.33e-12 c.69.1.20 34796 1hkhA 279 2.37e-12 c.69.1.12 90628 1m33A 258 2.79e-12 c.69.1.26 78514 1xklA 273 2.96e-12 c.69.1.20 115410 1zoiA 276 3.19e-12 1xqwA 293 3.27e-12 1r1dA 247 5.33e-12 c.69.1.29 96813 2veoA 441 5.49e-12 2r11A 306 5.49e-12 2qjwA 176 6.27e-12 2rhwA 283 6.74e-12 2cjpA 328 7.16e-12 2ocgA 254 9.27e-12 2h7cA 542 9.32e-12 c.69.1.1 136207 2og1A 286 1.18e-11 2pujA 286 1.65e-11 2puhA 286 2.00e-11 1a8sA 273 2.19e-11 c.69.1.12 34710 1uxoA 192 2.22e-11 c.69.1.31 108121 1tca 317 2.43e-11 1mj5A 302 2.50e-11 c.69.1.8 91285 1a8qA 274 2.93e-11 c.69.1.12 34702 2b61A 377 3.22e-11 3bwxA 285 4.36e-11 3c5vA 316 4.48e-11 1cv2A 296 4.68e-11 c.69.1.8 34680 1brtA 277 4.96e-11 c.69.1.12 34699 2yysA 286 7.03e-11 2ogtA 498 7.05e-11 2e3jA 356 7.66e-11 1b6gA 310 8.62e-11 c.69.1.8 34661 2qmqA 286 1.14e-10 1mnaA 298 1.28e-10 c.69.1.22 79322 3bf7A 255 1.64e-10 1qo7A 394 1.69e-10 c.69.1.11 34697 1ei9A 279 1.70e-10 c.69.1.13 34713 2psdA 318 2.00e-10 2qs9A 194 2.02e-10 1r3dA 264 2.79e-10 c.69.1.35 111680 1tcaA 317 5.34e-10 c.69.1.17 34726 1pjaA 302 5.38e-10 c.69.1.13 94758 2qruA 274 7.46e-10 3bdvA 191 8.53e-10 1gpl 432 1.03e-09 1y37A 304 1.18e-09 2qvbA 297 1.44e-09 1qlwA 328 1.63e-09 c.69.1.15 34722 2rauA 354 1.71e-09 1bu8A 452 1.76e-09 b.12.1.2,c.69.1.19 23647,34795 2o2iA 300 1.96e-09 2pl5A 366 2.44e-09 1thgA 544 2.62e-09 c.69.1.17 34763 1jmkC 230 3.61e-09 c.69.1.22 71747 2bceA 585 6.82e-09 c.69.1.1 34625 3bixA 574 8.53e-09 1ys1X 320 1.17e-08 1cvl 319 1.56e-08 2d80A 318 3.71e-08 2cb9A 244 5.51e-08 1cvlA 319 2.04e-07 c.69.1.18 34786 2hfkA 319 2.46e-07 1hplA 449 2.53e-07 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 7.94e-07 2d81A 318 1.24e-06 2px6A 316 2.28e-06 1ispA 181 2.45e-06 c.69.1.18 76778 1ivyA 452 2.88e-06 c.69.1.5 34654 1ac5 483 3.62e-06 1i6wA 181 6.36e-06 c.69.1.18 61859 1ac5A 483 1.16e-05 c.69.1.5 34653 1gt6A 269 7.77e-05 c.69.1.17 76342 1tibA 269 0.000158 c.69.1.17 34738 1tib 269 0.000197 2z5gA 387 0.000505 3tglA 269 0.000538 c.69.1.17 34733 1uwcA 261 0.000628 c.69.1.17 100101 2bjhA 260 0.004196 1thtA 305 0.01212 c.69.1.13 34711 1cexA 214 0.04033 c.69.1.30 31285 1whtA 256 0.05928 c.69.1.5 34646 1cex 214 0.07546 2dsnA 387 0.08173 1whsA 255 0.09474 c.69.1.5 34649 1whtB 153 0.2497 1whsB 153 0.2908 2oryA 346 0.6481 1qnrA 344 1.211 c.1.8.3 28834 2csuA 457 1.285 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1pswA 348 1.480 c.87.1.7 88287 1ku0A 388 2.496 c.69.1.18 72994 2czqA 205 2.775 1g66A 207 3.812 c.69.1.30 31329 2rkqA 169 4.027 1m22A 503 4.537 c.117.1.1 78464 1g0cA 364 5.301 c.1.8.3 60165 2bv9A 290 6.491 c.1.8.3 129242 2jg2A 422 7.550 2q09A 416 7.613 2cksA 306 7.705 2q4zA 312 7.732 1iirA 415 8.507 c.87.1.5 62453 2ob3A 330 8.871 1gu7A 364 9.780 b.35.1.2,c.2.1.1 83321,83322 2q62A 247 10.28 1tyfA 193 10.68 c.14.1.1 30885 1eqcA 394 10.97 c.1.8.3 28811 1itxA 419 11.71 c.1.8.5,d.26.3.1 71425,71426 2v9cA 215 12.01 1yt8A 539 12.34 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2hpvA 208 12.45 1eiwA 111 12.79 c.23.3.1 31130 1v6tA 255 15.98 c.6.2.5 113550 2bfgA 503 16.71 b.71.1.2,c.1.8.3 128423,128424 2eavA 165 17.18 1vflA 356 17.20 c.1.9.1 120041 2eaxA 164 17.49 1rxyA 253 18.32 c.56.2.1 98065 1gudA 288 18.34 c.93.1.1 83326 2f6kA 307 18.39 c.1.9.15 133047 1yb0A 159 18.69 d.118.1.1 122865 2gt1A 326 18.83 2liv 344 18.98 3clwA 507 19.36 1bqcA 302 19.88 c.1.8.3 28831 1wb0A 445 19.93 c.1.8.5,d.26.3.1 120825,120826 1edg 380 20.14 1fobA 334 20.60 c.1.8.3 83255 2ax4A 198 20.97 1ceo 343 21.46 1to3A 304 22.12 c.1.10.1 107161 1vf8A 377 22.47 c.1.8.5,d.26.3.1 120029,120030 2dx6A 159 23.04 1uf3A 228 24.12 d.159.1.6 99317 1usgA 346 24.31 c.93.1.1 99864 1fpzA 212 24.69 c.45.1.1 59976 1db3A 372 24.71 c.2.1.2 29813 1c93A 265 25.34 c.1.8.5 28998 3c8uA 208 26.77 1k6xA 352 26.77 c.2.1.2 68238 1fh9A 312 26.81 c.1.8.3 28913 2c0hA 353 27.91 c.1.8.3 129594 1js3A 486 28.52 c.67.1.6 67215 2hx1A 284 29.43 1zowA 313 31.07 1w1iE 357 31.15 c.1.9.1 109051 1sxrA 183 32.21 d.118.1.1 106101 1z15A 344 32.54 1vhwA 253 32.77 c.56.2.1 100706 1vp4A 425 33.24 c.67.1.1 113935 1o58A 303 33.46 c.79.1.1 92491 2grjA 192 33.69 2dri 271 33.87 1ohtA 215 34.32 d.118.1.1 87036 2nxwA 565 34.65 2i2wA 212 34.84 1pamA 686 35.38 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1h4pA 408 35.93 c.1.8.3 90617 1sg4A 260 36.00 c.14.1.3 118957 1ceoA 343 36.74 c.1.8.3 28808 1w85A 368 37.29 c.36.1.11 114335 2iv2X 715 37.61 b.52.2.2,c.81.1.1 137714,137715 2pc8A 400 38.41 1szoA 257 39.35 c.14.1.3 106164 1j5xA 342 41.67 c.80.1.1 71591 1uhvA 500 42.88 b.71.1.2,c.1.8.3 99402,99403 1moqA 368 42.89 c.80.1.1 35302 1b8oA 284 42.93 c.56.2.1 33762 2ozlB 341 43.01 c.36.1.7,c.48.1.2 139447,139448 2citA 282 43.06 c.1.8.3 130499 1o8uA 257 43.30 c.14.1.3 81194 1yjsA 419 44.34 c.67.1.4 123461 1ny1A 240 44.69 c.6.2.3 86395 2a5vA 213 44.88 1vmkA 277 45.32 c.56.2.1 113680 1eyeA 280 46.17 c.1.21.1 29672 1g3qA 237 46.57 c.37.1.10 60237 3cs3A 277 46.63 2a3nA 355 46.70 1e8cA 498 46.96 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1owqA 361 47.53 c.1.8.5,d.26.3.1 104041,104042 1vcoA 550 48.17 c.23.16.1,c.37.1.10 108508,108509 2v3gA 283 48.59 1g60A 260 49.58 c.66.1.11 70151 1j6oA 268 49.98 c.1.9.12 77088 1nnsA 326 50.13 c.88.1.1 85910 1e9lA 377 50.75 c.1.8.5,d.26.3.1 59395,59396 1eceA 358 51.09 c.1.8.3 28813 2dvtA 327 51.35 c.1.9.15 131793 1kngA 156 52.28 c.47.1.10 72777 2fg1A 158 52.28 c.50.1.2 133400 1edtA 271 52.46 c.1.8.5 28993 2z98A 200 52.68 2nm0A 253 52.70 1j0aA 325 52.87 c.79.1.1 83871 1orrA 347 53.78 c.2.1.2 93460 1o7jA 327 54.13 c.88.1.1 81140 1yu6A 275 54.35 c.41.1.1 124040 2viaA 405 55.00 1fmjA 351 55.14 c.37.1.5 59879 1tk9A 188 55.28 c.80.1.3 107082 1t35A 191 55.84 c.129.1.1 99108 1rttA 193 55.85 c.23.5.4 105098 1hkkA 364 56.97 c.1.8.5,d.26.3.1 90634,90635 1ri5A 298 57.02 c.66.1.34 97502 2gmnA 274 57.79 1xyzA 347 57.79 c.1.8.3 28804 2vguA 407 58.54 2fr1A 486 59.08 c.2.1.2,c.2.1.2 133961,133962 1mvlA 209 59.13 c.34.1.1 85146 2ppwA 216 59.53 7a3hA 303 59.89 c.1.8.3 28817 2pocA 367 60.48 1cqxA 403 60.67 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1hdoA 206 60.98 c.2.1.2 60965 1z7yA 322 61.29 c.79.1.1 124679 2qahA 303 61.48 1hjsA 332 62.76 c.1.8.3 83492 1b9hA 388 62.79 c.67.1.4 34488 1ivnA 190 64.32 c.23.10.5 83719 1o69A 394 64.52 c.67.1.4 92560 1uwvA 433 64.93 b.40.4.12,c.66.1.40 100128,100129 2dfaA 250 64.95 c.6.2.5 131469 8abp 306 65.50 1vpqA 273 65.75 c.1.32.1 113974 2ozlA 365 65.90 1bdbA 277 66.14 c.2.1.2 29874 1hzdA 272 66.20 c.14.1.3 65969 2f2lX 167 67.63 d.118.1.1 132844 1tikA 213 67.90 c.23.5.3 107003 2q3bA 313 68.39 2bneA 241 69.29 c.73.1.3 128824 1g2oA 268 69.31 c.56.2.1 60228 2qmoA 220 70.06 1ydgA 211 70.32 c.23.5.8 116614 1wekA 217 72.40 c.129.1.1 114553 1ve1A 304 73.57 c.79.1.1 120007 2bmaA 470 74.10 3b6nA 187 74.11 1ve5A 311 74.28 c.79.1.1 120013 1t0iA 191 75.22 c.23.5.4 106209 1bgvA 449 75.83 c.2.1.7,c.58.1.1 30217,33865 2ohhA 404 76.15 1x92A 199 77.82 c.80.1.3 114976 2q4oA 215 77.86 c.129.1.1 139872 1umdA 367 78.71 c.36.1.11 99599 1xx4A 261 78.87 c.14.1.3 116138 2afbA 351 80.36 c.72.1.1 126674 1ynuA 473 81.93 c.67.1.4 123762 2furA 209 82.30 b.45.1.1 134185 1o1xA 155 82.54 c.121.1.1 86553 1onxA 390 82.54 b.92.1.7,c.1.9.13 87176,87177 3c1mA 473 83.00 2depA 356 83.44 2bgxA 261 84.22 a.20.1.1,d.118.1.1 128504,128505 1e3jA 352 84.86 b.35.1.2,c.2.1.1 24765,29781 1uzmA 247 85.65 c.2.1.2 119811 1ecpA 238 85.90 c.56.2.1 33775 1ox0A 430 86.03 c.95.1.1,c.95.1.1 87495,87496 2yvaA 196 87.03 1h1nA 305 87.26 c.1.8.3 70855 1fcjA 322 87.48 c.79.1.1 35289 1pyfA 312 89.05 c.1.7.1 95334 1v0lA 313 89.14 c.1.8.3 108207 2gwgA 350 89.26 c.1.9.15 135805 1kewA 361 89.35 c.2.1.2 68544 1w24A 182 89.73 d.159.1.7 120579