# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 2.85e-24 2z3zA 706 8.56e-24 2hu5A 582 2.28e-23 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 4.68e-22 b.70.3.1,c.69.1.24 87354,87355 1o6gA 710 8.11e-22 b.69.7.1,c.69.1.4 81087,81088 1qfmA 710 9.18e-22 b.69.7.1,c.69.1.4 27673,34641 1h2wA 710 1.50e-21 b.69.7.1,c.69.1.4 76596,76597 1xfdA 723 1.67e-21 b.70.3.1,c.69.1.24 115251,115252 2qm0A 275 7.66e-21 2uz0A 263 1.07e-20 2bklA 695 1.71e-20 1yr2A 741 2.39e-20 3c8dA 403 3.24e-20 1vlqA 337 1.83e-19 c.69.1.25 108848 1l7aA 318 2.11e-19 c.69.1.25 77772 2b20A 403 2.35e-19 b.1.18.20,c.69.1.2 127685,127686 2gzsA 278 2.96e-19 2jbwA 386 7.28e-19 3b5eA 223 1.07e-18 2r8bA 251 1.10e-18 1wb4A 297 1.27e-18 c.69.1.2 120827 2i3dA 249 2.43e-18 1pv1A 299 3.97e-18 c.69.1.34 111639 1f0nA 285 4.78e-18 c.69.1.3 34636 1zi8A 236 1.02e-17 2o2gA 223 1.60e-17 1lzlA 323 1.69e-17 c.69.1.2 78306 1ycdA 243 2.13e-17 1jjfA 268 2.16e-17 c.69.1.2 66765 1fj2A 232 2.60e-17 c.69.1.14 34720 1din 236 5.31e-17 3bxpA 277 6.72e-17 1jfrA 262 9.04e-17 c.69.1.16 34724 1auoA 218 1.19e-16 c.69.1.14 34716 2fx5A 258 1.25e-16 1jjiA 311 2.16e-16 c.69.1.2 66766 1thg 544 2.78e-16 1qe3A 489 3.16e-16 c.69.1.1 34630 2fukA 220 3.43e-16 1ufoA 238 3.97e-16 c.69.1.27 99344 1ea5A 537 4.16e-16 c.69.1.1 34592 1p0iA 529 4.60e-16 c.69.1.1 93867 1u4nA 310 5.34e-16 c.69.1.2 113021 1vkhA 273 9.41e-16 c.69.1.32 108662 1r88A 280 1.05e-15 c.69.1.3 97219 1dqzA 280 1.10e-15 c.69.1.3 34638 1cleA 534 1.86e-15 c.69.1.17 34771 1ukcA 522 3.44e-15 c.69.1.17 107911 1llfA 534 5.72e-15 c.69.1.17 78094 1mpxA 615 5.94e-15 b.18.1.13,c.69.1.21 85041,85042 2hdwA 367 1.32e-14 2pblA 262 5.89e-14 2bce 581 9.18e-14 1ju3A 583 7.33e-13 b.18.1.13,c.69.1.21 67300,67301 1imjA 210 1.28e-12 c.69.1.23 71246 2hm7A 310 1.88e-12 1wm1A 317 2.26e-12 c.69.1.7 109405 1j1iA 296 2.38e-12 c.69.1.10 83977 1q0rA 298 5.36e-12 c.69.1.28 95508 1ede 310 7.17e-12 1jkmA 358 7.19e-12 c.69.1.2 34633 1u2eA 289 7.69e-12 1b6g 310 1.25e-11 1qtrA 317 1.33e-11 c.69.1.7 34660 1va4A 279 1.38e-11 c.69.1.12 108458 1c4xA 285 1.61e-11 c.69.1.10 34684 1uk8A 282 1.63e-11 c.69.1.10 107907 1lnsA 763 1.67e-11 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ehyA 294 1.70e-11 c.69.1.11 34693 1hlgA 371 1.87e-11 c.69.1.6 34656 1bn7A 294 1.92e-11 c.69.1.8 34677 1a88A 275 1.97e-11 c.69.1.12 34707 1zd3A 555 2.15e-11 c.108.1.2,c.69.1.11 124930,124931 1azwA 313 2.77e-11 c.69.1.7 34658 1yasA 257 2.78e-11 c.69.1.20 34801 1k8qA 377 2.95e-11 c.69.1.6 72177 1brt 277 3.02e-11 2o7rA 338 3.15e-11 2veoA 441 3.42e-11 1broA 277 3.53e-11 c.69.1.12 34700 1mtzA 293 3.54e-11 c.69.1.7 79467 1tqhA 247 4.62e-11 c.69.1.29 107225 1qj4A 257 8.06e-11 c.69.1.20 34796 1m33A 258 9.26e-11 c.69.1.26 78514 3bdiA 207 9.37e-11 2h7cA 542 1.06e-10 c.69.1.1 136207 2qjwA 176 1.07e-10 1r1dA 247 1.24e-10 c.69.1.29 96813 1womA 271 1.30e-10 1hkhA 279 1.39e-10 c.69.1.12 90628 1tca 317 1.80e-10 2cjpA 328 2.11e-10 2r11A 306 2.52e-10 1xqwA 293 2.60e-10 2rhwA 283 2.65e-10 3c5vA 316 2.99e-10 1zoiA 276 3.01e-10 2og1A 286 3.77e-10 1mj5A 302 3.81e-10 c.69.1.8 91285 2ocgA 254 4.47e-10 2b61A 377 4.48e-10 1xklA 273 4.77e-10 c.69.1.20 115410 1mnaA 298 4.87e-10 c.69.1.22 79322 1cv2A 296 5.15e-10 c.69.1.8 34680 2pujA 286 6.32e-10 2puhA 286 7.03e-10 1uxoA 192 8.15e-10 c.69.1.31 108121 2ogtA 498 8.39e-10 1ei9A 279 1.21e-09 c.69.1.13 34713 1a8sA 273 1.67e-09 c.69.1.12 34710 2e3jA 356 1.81e-09 1b6gA 310 1.82e-09 c.69.1.8 34661 2qmqA 286 2.12e-09 2qruA 274 2.32e-09 1brtA 277 2.98e-09 c.69.1.12 34699 2psdA 318 3.14e-09 1a8qA 274 3.16e-09 c.69.1.12 34702 3bf7A 255 3.32e-09 3bwxA 285 4.13e-09 1qo7A 394 4.23e-09 c.69.1.11 34697 1tcaA 317 4.36e-09 c.69.1.17 34726 1bu8A 452 4.66e-09 b.12.1.2,c.69.1.19 23647,34795 3bdvA 191 5.52e-09 2qs9A 194 5.68e-09 1gpl 432 5.69e-09 2yysA 286 5.88e-09 1r3dA 264 7.30e-09 c.69.1.35 111680 1pjaA 302 7.47e-09 c.69.1.13 94758 2qvbA 297 1.10e-08 1y37A 304 1.12e-08 2rauA 354 1.57e-08 2o2iA 300 1.77e-08 2pl5A 366 1.93e-08 1thgA 544 2.27e-08 c.69.1.17 34763 1ys1X 320 2.55e-08 1qlwA 328 2.60e-08 c.69.1.15 34722 1jmkC 230 3.03e-08 c.69.1.22 71747 1cvl 319 4.79e-08 3bixA 574 8.11e-08 2bceA 585 1.38e-07 c.69.1.1 34625 2d80A 318 2.31e-07 1cvlA 319 2.43e-07 c.69.1.18 34786 2hfkA 319 3.95e-07 2cb9A 244 8.54e-07 1hplA 449 1.29e-06 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 1.91e-06 2d81A 318 6.36e-06 1ispA 181 9.61e-06 c.69.1.18 76778 2px6A 316 1.75e-05 1i6wA 181 2.31e-05 c.69.1.18 61859 1gt6A 269 4.92e-05 c.69.1.17 76342 1ac5 483 5.73e-05 1ivyA 452 0.000121 c.69.1.5 34654 1tibA 269 0.000157 c.69.1.17 34738 1ac5A 483 0.000223 c.69.1.5 34653 1tib 269 0.000229 1uwcA 261 0.000723 c.69.1.17 100101 2z5gA 387 0.000804 3tglA 269 0.000881 c.69.1.17 34733 2bjhA 260 0.001882 1cexA 214 0.02653 c.69.1.30 31285 1cex 214 0.04162 2dsnA 387 0.05813 1thtA 305 0.1132 c.69.1.13 34711 1whtA 256 0.1616 c.69.1.5 34646 1whsA 255 0.2954 c.69.1.5 34649 2oryA 346 1.043 2csuA 457 1.389 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1qnrA 344 2.320 c.1.8.3 28834 1ku0A 388 2.743 c.69.1.18 72994 1g0cA 364 2.967 c.1.8.3 60165 1whtB 153 3.127 1whsB 153 3.156 2bv9A 290 4.260 c.1.8.3 129242 2gt1A 326 4.423 1pswA 348 4.472 c.87.1.7 88287 2v9cA 215 4.515 1vflA 356 4.612 c.1.9.1 120041 1itxA 419 5.444 c.1.8.5,d.26.3.1 71425,71426 2q4zA 312 6.125 1g66A 207 6.549 c.69.1.30 31329 2czqA 205 6.890 3clwA 507 7.159 2bfgA 503 7.293 b.71.1.2,c.1.8.3 128423,128424 2q62A 247 8.206 1vhwA 253 8.632 c.56.2.1 100706 2ob3A 330 8.676 1ceo 343 9.030 1zowA 313 9.182 1eceA 358 9.97 c.1.8.3 28813 1tyfA 193 10.68 c.14.1.1 30885 1eqcA 394 10.98 c.1.8.3 28811 2hpvA 208 11.74 1owqA 361 11.79 c.1.8.5,d.26.3.1 104041,104042 1yb0A 159 12.41 d.118.1.1 122865 2cksA 306 12.91 1m22A 503 13.06 c.117.1.1 78464 1wb0A 445 13.59 c.1.8.5,d.26.3.1 120825,120826 2c0hA 353 14.29 c.1.8.3 129594 1w1iE 357 14.51 c.1.9.1 109051 2i2wA 212 15.04 1eiwA 111 15.39 c.23.3.1 31130 1tk9A 188 15.85 c.80.1.3 107082 1gudA 288 16.15 c.93.1.1 83326 2pqmA 343 16.34 2q09A 416 16.60 1edg 380 16.60 2ax4A 198 17.32 1db3A 372 17.69 c.2.1.2 29813 2jg2A 422 18.41 1bdbA 277 20.17 c.2.1.2 29874 1gu7A 364 21.12 b.35.1.2,c.2.1.1 83321,83322 1e9lA 377 21.92 c.1.8.5,d.26.3.1 59395,59396 1e3jA 352 22.74 b.35.1.2,c.2.1.1 24765,29781 1fh9A 312 23.96 c.1.8.3 28913 2z98A 200 24.69 1pamA 686 26.00 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1vmkA 277 27.07 c.56.2.1 113680 1h1nA 305 27.56 c.1.8.3 70855 1vf8A 377 27.61 c.1.8.5,d.26.3.1 120029,120030 2v3gA 283 27.71 1vp4A 425 28.59 c.67.1.1 113935 2eaxA 164 28.83 1vjzA 341 29.46 c.1.8.3 100838 2nm0A 253 29.67 2yvaA 196 29.81 1bg4A 302 29.98 c.1.8.3 28806 1o58A 303 30.27 c.79.1.1 92491 2dx6A 159 30.28 1hzdA 272 30.63 c.14.1.3 65969 2dri 271 31.14 1x92A 199 31.27 c.80.1.3 114976 2bgxA 261 33.38 a.20.1.1,d.118.1.1 128504,128505 1bqcA 302 33.47 c.1.8.3 28831 1z7yA 322 34.19 c.79.1.1 124679 1sxrA 183 34.92 d.118.1.1 106101 1ctn 540 36.02 1vp8A 201 36.32 c.49.1.2 113947 1tvnA 293 36.40 c.1.8.3 119360 1hkkA 364 36.44 c.1.8.5,d.26.3.1 90634,90635 1e8cA 498 36.47 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1f89A 291 36.49 d.160.1.1 64988 2f6kA 307 36.78 c.1.9.15 133047 1ohtA 215 36.82 d.118.1.1 87036 1orrA 347 37.26 c.2.1.2 93460 2liv 344 38.09 2c2nA 339 39.66 1yt8A 539 40.01 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2citA 282 40.57 c.1.8.3 130499 1hdoA 206 40.78 c.2.1.2 60965 1fobA 334 41.03 c.1.8.3 83255 2ohhA 404 41.08 1k6xA 352 41.39 c.2.1.2 68238 3ctpA 330 42.30 1to3A 304 43.17 c.1.10.1 107161 1rxyA 253 44.25 c.56.2.1 98065 1ox0A 430 47.18 c.95.1.1,c.95.1.1 87495,87496 1gewA 356 47.81 c.67.1.1 60470 1to6A 371 47.92 c.141.1.1 107170 1ceoA 343 49.17 c.1.8.3 28808 1usgA 346 50.32 c.93.1.1 99864 1kbjA 412 50.84 c.1.4.1 72280 1vcoA 550 51.01 c.23.16.1,c.37.1.10 108508,108509 2hx1A 284 51.73 1js3A 486 52.72 c.67.1.6 67215 1jxhA 288 52.73 c.72.1.2 67415 3c8uA 208 53.78 1ll7A 392 55.26 c.1.8.5,d.26.3.1 78085,78086 1hjxA 362 55.28 c.1.8.5,d.26.3.1 83512,83513 1c93A 265 56.70 c.1.8.5 28998 2a3nA 355 56.84 2q3bA 313 57.80 1xyzA 347 58.37 c.1.8.3 28804 1lfaA 187 58.77 c.62.1.1 34122 1b3bA 415 59.49 c.2.1.7,c.58.1.1 30244,33892 1z15A 344 59.70 2f2lX 167 60.16 d.118.1.1 132844 2uxyA 341 60.24 1jndA 420 60.47 c.1.8.5,d.26.3.1 71757,71758 1edtA 271 60.65 c.1.8.5 28993 2o55A 258 61.23 2cuyA 305 61.31 1geeA 261 61.63 c.2.1.2 90509 1tikA 213 61.96 c.23.5.3 107003 1h4pA 408 63.24 c.1.8.3 90617 2fr1A 486 63.70 c.2.1.2,c.2.1.2 133961,133962 1es9A 232 63.80 c.23.10.3 31340 7a3hA 303 64.10 c.1.8.3 28817 1qe5A 266 64.92 c.56.2.1 33784 1pmmA 466 66.17 c.67.1.6 94901 1gcoA 261 66.57 c.2.1.2 29884 1v72A 356 67.29 c.67.1.1 119860 1ef8A 261 68.24 c.14.1.3 30921 1uhvA 500 68.30 b.71.1.2,c.1.8.3 99402,99403 2nxwA 565 68.84 1v0lA 313 69.26 c.1.8.3 108207 1mjnA 179 69.43 c.62.1.1 79210 1edqA 540 69.75 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2depA 356 70.29 2pc8A 400 71.70 1rh9A 373 72.67 c.1.8.3 118773 3co4A 312 73.81 1fcjA 322 73.97 c.79.1.1 35289 1j0aA 325 74.01 c.79.1.1 83871 1l1eA 287 74.02 c.66.1.18 73454 1ve5A 311 74.05 c.79.1.1 120013 1rttA 193 74.38 c.23.5.4 105098 1vlwA 217 75.68 c.1.10.1 108868 1w85A 368 76.26 c.36.1.11 114335 1sg4A 260 76.59 c.14.1.3 118957 2e87A 357 77.12 2osxA 481 77.77 1w6uA 302 78.93 c.2.1.2 114288 2uz1A 563 79.41 2rkqA 169 80.28 1uf3A 228 80.54 d.159.1.6 99317 1eyeA 280 81.58 c.1.21.1 29672 1o8uA 257 82.08 c.14.1.3 81194 2r6hA 290 83.10 1a4mA 349 83.23 c.1.9.1 29014 2gwgA 350 83.91 c.1.9.15 135805 1uwvA 433 84.10 b.40.4.12,c.66.1.40 100128,100129 2qmoA 220 84.87 1bgvA 449 86.05 c.2.1.7,c.58.1.1 30217,33865 2qahA 303 87.78 1ivnA 190 89.20 c.23.10.5 83719 1szoA 257 89.36 c.14.1.3 106164 1qh8A 478 89.45 c.92.2.3 35633 1t2aA 375 89.65 c.2.1.2 99078