# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 1.18e-24 2z3zA 706 4.39e-24 2hu5A 582 1.37e-23 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 2.64e-22 b.70.3.1,c.69.1.24 87354,87355 1o6gA 710 4.52e-22 b.69.7.1,c.69.1.4 81087,81088 1qfmA 710 4.97e-22 b.69.7.1,c.69.1.4 27673,34641 1h2wA 710 8.80e-22 b.69.7.1,c.69.1.4 76596,76597 1xfdA 723 1.05e-21 b.70.3.1,c.69.1.24 115251,115252 2qm0A 275 5.98e-21 2uz0A 263 8.25e-21 2bklA 695 1.15e-20 1yr2A 741 1.19e-20 3c8dA 403 2.55e-20 1vlqA 337 8.42e-20 c.69.1.25 108848 2b20A 403 1.23e-19 b.1.18.20,c.69.1.2 127685,127686 1l7aA 318 1.42e-19 c.69.1.25 77772 2gzsA 278 2.76e-19 2jbwA 386 5.00e-19 2r8bA 251 7.77e-19 3b5eA 223 9.61e-19 1wb4A 297 1.22e-18 c.69.1.2 120827 2i3dA 249 1.61e-18 1pv1A 299 3.38e-18 c.69.1.34 111639 1f0nA 285 3.61e-18 c.69.1.3 34636 1zi8A 236 8.23e-18 1lzlA 323 1.12e-17 c.69.1.2 78306 1fj2A 232 1.35e-17 c.69.1.14 34720 1ycdA 243 1.36e-17 2o2gA 223 1.40e-17 1jjfA 268 1.54e-17 c.69.1.2 66765 1din 236 3.35e-17 3bxpA 277 4.70e-17 1jfrA 262 5.97e-17 c.69.1.16 34724 2fx5A 258 9.66e-17 1auoA 218 9.98e-17 c.69.1.14 34716 1jjiA 311 1.49e-16 c.69.1.2 66766 2fukA 220 2.35e-16 1thg 544 2.65e-16 1ufoA 238 2.98e-16 c.69.1.27 99344 1qe3A 489 3.27e-16 c.69.1.1 34630 1u4nA 310 3.74e-16 c.69.1.2 113021 1ea5A 537 4.37e-16 c.69.1.1 34592 1p0iA 529 4.52e-16 c.69.1.1 93867 1vkhA 273 7.79e-16 c.69.1.32 108662 1r88A 280 9.05e-16 c.69.1.3 97219 1dqzA 280 9.07e-16 c.69.1.3 34638 1cleA 534 1.67e-15 c.69.1.17 34771 1ukcA 522 3.45e-15 c.69.1.17 107911 1llfA 534 5.35e-15 c.69.1.17 78094 1mpxA 615 5.79e-15 b.18.1.13,c.69.1.21 85041,85042 2hdwA 367 8.31e-15 2pblA 262 4.18e-14 2bce 581 9.60e-14 1ju3A 583 5.96e-13 b.18.1.13,c.69.1.21 67300,67301 1imjA 210 1.01e-12 c.69.1.23 71246 2hm7A 310 1.40e-12 1wm1A 317 1.41e-12 c.69.1.7 109405 1j1iA 296 1.44e-12 c.69.1.10 83977 1q0rA 298 3.87e-12 c.69.1.28 95508 1jkmA 358 5.06e-12 c.69.1.2 34633 1u2eA 289 5.48e-12 1ede 310 6.56e-12 1qtrA 317 9.59e-12 c.69.1.7 34660 1lnsA 763 9.89e-12 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1b6g 310 1.13e-11 1va4A 279 1.16e-11 c.69.1.12 108458 1uk8A 282 1.20e-11 c.69.1.10 107907 1c4xA 285 1.22e-11 c.69.1.10 34684 1hlgA 371 1.24e-11 c.69.1.6 34656 1ehyA 294 1.40e-11 c.69.1.11 34693 1bn7A 294 1.46e-11 c.69.1.8 34677 1a88A 275 1.65e-11 c.69.1.12 34707 1azwA 313 1.79e-11 c.69.1.7 34658 1yasA 257 1.83e-11 c.69.1.20 34801 1zd3A 555 2.02e-11 c.108.1.2,c.69.1.11 124930,124931 1mtzA 293 2.34e-11 c.69.1.7 79467 1brt 277 2.41e-11 2veoA 441 2.45e-11 2o7rA 338 2.47e-11 1k8qA 377 2.50e-11 c.69.1.6 72177 1broA 277 2.87e-11 c.69.1.12 34700 1tqhA 247 3.38e-11 c.69.1.29 107225 1qj4A 257 5.51e-11 c.69.1.20 34796 3bdiA 207 5.82e-11 1m33A 258 5.99e-11 c.69.1.26 78514 1r1dA 247 7.34e-11 c.69.1.29 96813 2qjwA 176 7.88e-11 1hkhA 279 1.02e-10 c.69.1.12 90628 1womA 271 1.03e-10 2h7cA 542 1.26e-10 c.69.1.1 136207 2cjpA 328 1.43e-10 1tca 317 1.67e-10 2r11A 306 1.74e-10 1xqwA 293 1.76e-10 3c5vA 316 1.90e-10 2rhwA 283 2.23e-10 1mj5A 302 2.45e-10 c.69.1.8 91285 2b61A 377 2.67e-10 1zoiA 276 2.87e-10 1xklA 273 3.05e-10 c.69.1.20 115410 2og1A 286 3.20e-10 2ocgA 254 3.56e-10 1cv2A 296 3.73e-10 c.69.1.8 34680 2pujA 286 4.93e-10 1mnaA 298 5.03e-10 c.69.1.22 79322 2puhA 286 5.91e-10 1uxoA 192 6.38e-10 c.69.1.31 108121 2ogtA 498 9.19e-10 1ei9A 279 1.09e-09 c.69.1.13 34713 1a8sA 273 1.32e-09 c.69.1.12 34710 1b6gA 310 1.55e-09 c.69.1.8 34661 2qmqA 286 1.69e-09 2e3jA 356 1.70e-09 2psdA 318 2.10e-09 3bf7A 255 2.24e-09 1brtA 277 2.54e-09 c.69.1.12 34699 3bwxA 285 3.14e-09 1qo7A 394 3.16e-09 c.69.1.11 34697 2qruA 274 3.21e-09 1a8qA 274 3.27e-09 c.69.1.12 34702 1tcaA 317 3.75e-09 c.69.1.17 34726 2qs9A 194 3.83e-09 2yysA 286 4.24e-09 3bdvA 191 4.40e-09 1bu8A 452 4.66e-09 b.12.1.2,c.69.1.19 23647,34795 1r3dA 264 5.38e-09 c.69.1.35 111680 1gpl 432 5.62e-09 1pjaA 302 7.82e-09 c.69.1.13 94758 1y37A 304 7.86e-09 2qvbA 297 8.58e-09 2o2iA 300 1.20e-08 2pl5A 366 1.21e-08 2rauA 354 1.42e-08 1qlwA 328 1.94e-08 c.69.1.15 34722 1thgA 544 2.50e-08 c.69.1.17 34763 1jmkC 230 2.64e-08 c.69.1.22 71747 1ys1X 320 2.77e-08 1cvl 319 4.25e-08 3bixA 574 8.71e-08 2bceA 585 1.23e-07 c.69.1.1 34625 2d80A 318 1.69e-07 1cvlA 319 2.27e-07 c.69.1.18 34786 2hfkA 319 4.33e-07 2cb9A 244 6.77e-07 1hplA 449 1.14e-06 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 1.38e-06 2d81A 318 5.05e-06 1ispA 181 1.01e-05 c.69.1.18 76778 2px6A 316 1.73e-05 1i6wA 181 2.24e-05 c.69.1.18 61859 1gt6A 269 4.81e-05 c.69.1.17 76342 1ac5 483 4.87e-05 1ivyA 452 9.46e-05 c.69.1.5 34654 1tibA 269 0.000135 c.69.1.17 34738 1ac5A 483 0.000187 c.69.1.5 34653 1tib 269 0.000223 3tglA 269 0.000758 c.69.1.17 34733 2z5gA 387 0.000806 1uwcA 261 0.000883 c.69.1.17 100101 2bjhA 260 0.001955 1cexA 214 0.03033 c.69.1.30 31285 2dsnA 387 0.05852 1cex 214 0.05944 1thtA 305 0.08580 c.69.1.13 34711 1whtA 256 0.1889 c.69.1.5 34646 1whsA 255 0.3657 c.69.1.5 34649 2oryA 346 1.220 2csuA 457 1.409 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1qnrA 344 2.315 c.1.8.3 28834 1whtB 153 2.780 1whsB 153 2.860 2bv9A 290 3.134 c.1.8.3 129242 1ku0A 388 3.166 c.69.1.18 72994 2gt1A 326 3.793 1vflA 356 4.059 c.1.9.1 120041 1g0cA 364 4.263 c.1.8.3 60165 1pswA 348 4.387 c.87.1.7 88287 2v9cA 215 4.408 1itxA 419 5.067 c.1.8.5,d.26.3.1 71425,71426 1g66A 207 6.233 c.69.1.30 31329 2q4zA 312 6.334 2bfgA 503 7.600 b.71.1.2,c.1.8.3 128423,128424 1vhwA 253 8.448 c.56.2.1 100706 2czqA 205 8.453 1ceo 343 8.465 2ob3A 330 8.498 3clwA 507 9.182 2q62A 247 10.13 2q09A 416 10.17 1tyfA 193 10.31 c.14.1.1 30885 1eceA 358 10.98 c.1.8.3 28813 2hpvA 208 11.39 1m22A 503 11.63 c.117.1.1 78464 1owqA 361 11.84 c.1.8.5,d.26.3.1 104041,104042 2cksA 306 11.90 1w1iE 357 12.13 c.1.9.1 109051 1tk9A 188 12.89 c.80.1.3 107082 1zowA 313 13.00 1eqcA 394 13.02 c.1.8.3 28811 1eiwA 111 13.79 c.23.3.1 31130 1edg 380 14.97 1gudA 288 15.38 c.93.1.1 83326 1yb0A 159 15.69 d.118.1.1 122865 2ax4A 198 15.71 2pqmA 343 16.18 1wb0A 445 16.30 c.1.8.5,d.26.3.1 120825,120826 2i2wA 212 16.57 1e3jA 352 18.37 b.35.1.2,c.2.1.1 24765,29781 2c0hA 353 18.53 c.1.8.3 129594 2v3gA 283 19.33 1db3A 372 19.44 c.2.1.2 29813 1vmkA 277 20.34 c.56.2.1 113680 1fh9A 312 21.57 c.1.8.3 28913 2jg2A 422 22.34 1e9lA 377 22.38 c.1.8.5,d.26.3.1 59395,59396 1bdbA 277 22.56 c.2.1.2 29874 1pamA 686 22.92 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1bg4A 302 24.68 c.1.8.3 28806 3ctpA 330 25.04 1e8cA 498 25.85 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2z98A 200 26.03 1vf8A 377 26.34 c.1.8.5,d.26.3.1 120029,120030 2f6kA 307 26.86 c.1.9.15 133047 2yvaA 196 29.39 1x92A 199 30.53 c.80.1.3 114976 1h1nA 305 30.54 c.1.8.3 70855 1to3A 304 31.70 c.1.10.1 107161 1rxyA 253 32.63 c.56.2.1 98065 1xyzA 347 33.03 c.1.8.3 28804 1gu7A 364 33.44 b.35.1.2,c.2.1.1 83321,83322 1vjzA 341 33.55 c.1.8.3 100838 1hzdA 272 33.64 c.14.1.3 65969 2eaxA 164 33.68 2ohhA 404 33.87 1hkkA 364 34.99 c.1.8.5,d.26.3.1 90634,90635 2bgxA 261 35.55 a.20.1.1,d.118.1.1 128504,128505 2dri 271 35.79 1z7yA 322 35.92 c.79.1.1 124679 1k6xA 352 35.99 c.2.1.2 68238 1ctn 540 36.48 1f89A 291 36.74 d.160.1.1 64988 1hdoA 206 38.30 c.2.1.2 60965 1orrA 347 38.30 c.2.1.2 93460 1o58A 303 38.48 c.79.1.1 92491 2nm0A 253 38.60 2dx6A 159 38.94 1tvnA 293 39.80 c.1.8.3 119360 2liv 344 40.76 1gewA 356 42.05 c.67.1.1 60470 1es9A 232 42.49 c.23.10.3 31340 1bqcA 302 42.84 c.1.8.3 28831 1to6A 371 42.94 c.141.1.1 107170 1fobA 334 43.31 c.1.8.3 83255 1ohtA 215 44.05 d.118.1.1 87036 1vp4A 425 45.36 c.67.1.1 113935 1c93A 265 45.37 c.1.8.5 28998 1usgA 346 45.47 c.93.1.1 99864 2e87A 357 46.16 2citA 282 47.44 c.1.8.3 130499 1yt8A 539 48.14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2c2nA 339 48.91 2cuyA 305 49.37 1lfaA 187 49.47 c.62.1.1 34122 1sxrA 183 51.19 d.118.1.1 106101 2q3bA 313 51.43 1hjxA 362 52.54 c.1.8.5,d.26.3.1 83512,83513 1vp8A 201 54.45 c.49.1.2 113947 1uhvA 500 54.47 b.71.1.2,c.1.8.3 99402,99403 2depA 356 54.98 2hx1A 284 55.04 2nxwA 565 55.16 3c8uA 208 56.47 2o55A 258 56.51 7a3hA 303 57.82 c.1.8.3 28817 1ivnA 190 57.88 c.23.10.5 83719 1ve5A 311 58.65 c.79.1.1 120013 1tikA 213 59.11 c.23.5.3 107003 1ox0A 430 59.51 c.95.1.1,c.95.1.1 87495,87496 1ceoA 343 59.56 c.1.8.3 28808 1uf3A 228 59.92 d.159.1.6 99317 2uxyA 341 60.28 1z15A 344 60.47 1qe5A 266 60.96 c.56.2.1 33784 1js3A 486 61.22 c.67.1.6 67215 2a3nA 355 61.25 1kbjA 412 61.35 c.1.4.1 72280 1j0aA 325 61.37 c.79.1.1 83871 1mjnA 179 61.74 c.62.1.1 79210 1ll7A 392 62.65 c.1.8.5,d.26.3.1 78085,78086 1rh9A 373 62.89 c.1.8.3 118773 1j5xA 342 64.47 c.80.1.1 71591 1l1eA 287 64.98 c.66.1.18 73454 3cs3A 277 64.99 2pq6A 482 65.12 2fr1A 486 65.27 c.2.1.2,c.2.1.2 133961,133962 1w85A 368 65.70 c.36.1.11 114335 1v0lA 313 67.12 c.1.8.3 108207 1jndA 420 67.35 c.1.8.5,d.26.3.1 71757,71758 2uz1A 563 68.09 1v6tA 255 68.72 c.6.2.5 113550 2qmoA 220 69.24 1jxhA 288 70.03 c.72.1.2 67415 1sg4A 260 70.58 c.14.1.3 118957 1geeA 261 70.71 c.2.1.2 90509 1edtA 271 70.87 c.1.8.5 28993 2qahA 303 70.90 1ef8A 261 70.95 c.14.1.3 30921 1o8uA 257 72.10 c.14.1.3 81194 1ockA 412 72.66 c.117.1.1 86802 1jx6A 342 72.72 c.93.1.1 67406 2pc8A 400 73.04 1edqA 540 73.22 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2gwgA 350 73.59 c.1.9.15 135805 1gcoA 261 74.86 c.2.1.2 29884 2osxA 481 75.32 1f0kA 364 75.91 c.87.1.2 35465 1ajsA 412 76.27 c.67.1.1 34276 1v72A 356 76.42 c.67.1.1 119860 1h4pA 408 78.22 c.1.8.3 90617 1b3bA 415 80.79 c.2.1.7,c.58.1.1 30244,33892 2rkqA 169 81.74 1rttA 193 81.84 c.23.5.4 105098 1eyeA 280 82.16 c.1.21.1 29672 2r6hA 290 82.57 2h00A 254 82.80 c.66.1.54 135925 2f2lX 167 84.08 d.118.1.1 132844 2b4gA 317 84.19 c.1.4.1 127829 1a4mA 349 85.60 c.1.9.1 29014 2dvtA 327 86.09 c.1.9.15 131793 1kfwA 435 87.04 c.1.8.5,d.26.3.1 77376,77377 1szoA 257 87.12 c.14.1.3 106164 1vd6A 224 87.64 c.1.18.3 119991 1pmmA 466 88.16 c.67.1.6 94901 1uuqA 440 88.43 c.1.8.3 100015 1vbuA 328 88.85 c.1.8.3 119963 2ozlA 365 89.08 2i7gA 376 89.23 1vcoA 550 89.53 c.23.16.1,c.37.1.10 108508,108509