# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 5.86e-29 2z3zA 706 2.57e-28 2hu5A 582 1.18e-27 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 4.27e-26 b.70.3.1,c.69.1.24 87354,87355 1qfmA 710 4.88e-26 b.69.7.1,c.69.1.4 27673,34641 1o6gA 710 5.46e-26 b.69.7.1,c.69.1.4 81087,81088 1h2wA 710 9.05e-26 b.69.7.1,c.69.1.4 76596,76597 1xfdA 723 2.96e-25 b.70.3.1,c.69.1.24 115251,115252 2qm0A 275 1.04e-24 2uz0A 263 1.77e-24 2bklA 695 1.95e-24 1yr2A 741 2.03e-24 3c8dA 403 4.15e-24 1vlqA 337 3.08e-23 c.69.1.25 108848 2b20A 403 4.38e-23 b.1.18.20,c.69.1.2 127685,127686 1l7aA 318 5.00e-23 c.69.1.25 77772 2jbwA 386 1.13e-22 2gzsA 278 1.40e-22 1wb4A 297 2.09e-22 c.69.1.2 120827 2r8bA 251 2.70e-22 1pv1A 299 2.77e-22 c.69.1.34 111639 3b5eA 223 3.87e-22 1f0nA 285 7.76e-22 c.69.1.3 34636 2i3dA 249 8.45e-22 1jjfA 268 3.61e-21 c.69.1.2 66765 2o2gA 223 3.94e-21 1fj2A 232 1.00e-20 c.69.1.14 34720 1ycdA 243 1.00e-20 1zi8A 236 1.08e-20 1lzlA 323 1.48e-20 c.69.1.2 78306 1jfrA 262 4.51e-20 c.69.1.16 34724 3bxpA 277 5.34e-20 1din 236 5.39e-20 2fukA 220 1.28e-19 1auoA 218 1.33e-19 c.69.1.14 34716 2fx5A 258 1.37e-19 1jjiA 311 1.92e-19 c.69.1.2 66766 1ea5A 537 2.70e-19 c.69.1.1 34592 1thg 544 3.33e-19 1u4nA 310 3.40e-19 c.69.1.2 113021 1dqzA 280 4.87e-19 c.69.1.3 34638 1ufoA 238 4.93e-19 c.69.1.27 99344 1p0iA 529 6.85e-19 c.69.1.1 93867 1qe3A 489 7.88e-19 c.69.1.1 34630 1r88A 280 9.22e-19 c.69.1.3 97219 1cleA 534 2.47e-18 c.69.1.17 34771 1vkhA 273 4.01e-18 c.69.1.32 108662 1ukcA 522 6.29e-18 c.69.1.17 107911 1llfA 534 6.72e-18 c.69.1.17 78094 1mpxA 615 8.14e-18 b.18.1.13,c.69.1.21 85041,85042 2hdwA 367 9.78e-18 2bce 581 2.28e-16 2pblA 262 2.29e-16 1ju3A 583 1.19e-15 b.18.1.13,c.69.1.21 67300,67301 1imjA 210 3.86e-15 c.69.1.23 71246 1j1iA 296 4.80e-15 c.69.1.10 83977 2hm7A 310 7.19e-15 1wm1A 317 1.15e-14 c.69.1.7 109405 1q0rA 298 1.82e-14 c.69.1.28 95508 1u2eA 289 2.45e-14 1ede 310 4.36e-14 1jkmA 358 4.75e-14 c.69.1.2 34633 1lnsA 763 5.37e-14 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1va4A 279 7.01e-14 c.69.1.12 108458 1b6g 310 7.84e-14 1c4xA 285 7.96e-14 c.69.1.10 34684 1qtrA 317 8.18e-14 c.69.1.7 34660 1hlgA 371 8.26e-14 c.69.1.6 34656 1k8qA 377 9.19e-14 c.69.1.6 72177 1uk8A 282 9.55e-14 c.69.1.10 107907 1mtzA 293 1.00e-13 c.69.1.7 79467 1yasA 257 1.23e-13 c.69.1.20 34801 1brt 277 1.28e-13 1a88A 275 1.39e-13 c.69.1.12 34707 1ehyA 294 1.43e-13 c.69.1.11 34693 1zd3A 555 1.45e-13 c.108.1.2,c.69.1.11 124930,124931 1bn7A 294 1.60e-13 c.69.1.8 34677 1broA 277 1.81e-13 c.69.1.12 34700 1tqhA 247 2.79e-13 c.69.1.29 107225 2o7rA 338 2.81e-13 1azwA 313 3.09e-13 c.69.1.7 34658 1qj4A 257 3.66e-13 c.69.1.20 34796 1m33A 258 4.01e-13 c.69.1.26 78514 3bdiA 207 5.31e-13 2veoA 441 7.33e-13 1womA 271 7.98e-13 1hkhA 279 8.03e-13 c.69.1.12 90628 2qjwA 176 1.33e-12 1r1dA 247 1.37e-12 c.69.1.29 96813 1xqwA 293 1.38e-12 1xklA 273 1.43e-12 c.69.1.20 115410 2h7cA 542 1.52e-12 c.69.1.1 136207 2cjpA 328 1.86e-12 2r11A 306 1.96e-12 1zoiA 276 2.02e-12 2rhwA 283 2.56e-12 2og1A 286 3.19e-12 1tca 317 3.54e-12 2ocgA 254 3.73e-12 3c5vA 316 4.20e-12 2b61A 377 5.04e-12 1mj5A 302 5.05e-12 c.69.1.8 91285 1cv2A 296 5.62e-12 c.69.1.8 34680 1mnaA 298 6.11e-12 c.69.1.22 79322 2puhA 286 6.60e-12 1uxoA 192 7.12e-12 c.69.1.31 108121 2pujA 286 8.47e-12 1a8sA 273 1.64e-11 c.69.1.12 34710 2ogtA 498 1.73e-11 1ei9A 279 1.83e-11 c.69.1.13 34713 2qmqA 286 2.01e-11 2e3jA 356 2.12e-11 1a8qA 274 3.91e-11 c.69.1.12 34702 1b6gA 310 3.96e-11 c.69.1.8 34661 2psdA 318 4.64e-11 3bwxA 285 4.85e-11 1brtA 277 4.92e-11 c.69.1.12 34699 3bf7A 255 6.24e-11 1qo7A 394 7.03e-11 c.69.1.11 34697 2yysA 286 7.81e-11 2qs9A 194 9.16e-11 2qruA 274 1.29e-10 1bu8A 452 1.30e-10 b.12.1.2,c.69.1.19 23647,34795 1r3dA 264 1.40e-10 c.69.1.35 111680 3bdvA 191 1.44e-10 1tcaA 317 1.77e-10 c.69.1.17 34726 2qvbA 297 1.99e-10 1pjaA 302 2.02e-10 c.69.1.13 94758 1gpl 432 2.18e-10 1y37A 304 2.49e-10 2o2iA 300 2.77e-10 2rauA 354 3.01e-10 1qlwA 328 3.30e-10 c.69.1.15 34722 2pl5A 366 7.30e-10 1thgA 544 8.33e-10 c.69.1.17 34763 1jmkC 230 8.48e-10 c.69.1.22 71747 1ys1X 320 1.52e-09 1cvl 319 2.52e-09 3bixA 574 5.22e-09 2bceA 585 6.19e-09 c.69.1.1 34625 2d80A 318 7.64e-09 2hfkA 319 2.59e-08 1cvlA 319 2.91e-08 c.69.1.18 34786 2cb9A 244 3.08e-08 1hplA 449 7.07e-08 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 8.75e-08 2d81A 318 5.21e-07 2px6A 316 8.24e-07 1ispA 181 2.46e-06 c.69.1.18 76778 1ivyA 452 4.88e-06 c.69.1.5 34654 1gt6A 269 5.19e-06 c.69.1.17 76342 1i6wA 181 5.43e-06 c.69.1.18 61859 1ac5 483 1.07e-05 1tib 269 2.19e-05 1tibA 269 3.55e-05 c.69.1.17 34738 1ac5A 483 4.57e-05 c.69.1.5 34653 3tglA 269 8.92e-05 c.69.1.17 34733 1uwcA 261 0.000166 c.69.1.17 100101 2z5gA 387 0.000300 2bjhA 260 0.000412 1cexA 214 0.01198 c.69.1.30 31285 1cex 214 0.01625 1thtA 305 0.03271 c.69.1.13 34711 2dsnA 387 0.04498 1whtA 256 0.05316 c.69.1.5 34646 1whsA 255 0.07504 c.69.1.5 34649 2csuA 457 0.2438 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2oryA 346 0.2613 2czqA 205 0.4290 1whtB 153 0.4655 1whsB 153 0.6226 1qnrA 344 1.342 c.1.8.3 28834 2bv9A 290 1.977 c.1.8.3 129242 2v9cA 215 2.433 1g66A 207 2.657 c.69.1.30 31329 1g0cA 364 3.436 c.1.8.3 60165 1pswA 348 3.640 c.87.1.7 88287 1vflA 356 4.487 c.1.9.1 120041 2q09A 416 4.695 1ku0A 388 4.722 c.69.1.18 72994 2bfgA 503 5.720 b.71.1.2,c.1.8.3 128423,128424 1m22A 503 5.794 c.117.1.1 78464 2q4zA 312 6.833 2cksA 306 7.441 2ob3A 330 8.904 2hpvA 208 9.187 2gt1A 326 9.854 1eiwA 111 10.42 c.23.3.1 31130 1tyfA 193 10.55 c.14.1.1 30885 2f6kA 307 10.84 c.1.9.15 133047 1yb0A 159 10.85 d.118.1.1 122865 3clwA 507 11.09 1gudA 288 11.31 c.93.1.1 83326 1eceA 358 11.57 c.1.8.3 28813 2v3gA 283 13.43 2q62A 247 13.78 1w85A 368 15.19 c.36.1.11 114335 1db3A 372 15.40 c.2.1.2 29813 1w1iE 357 15.81 c.1.9.1 109051 1zowA 313 15.87 1gewA 356 15.94 c.67.1.1 60470 2i2wA 212 16.06 1vjzA 341 17.69 c.1.8.3 100838 1tk9A 188 17.73 c.80.1.3 107082 1itxA 419 18.10 c.1.8.5,d.26.3.1 71425,71426 2jg2A 422 18.59 1e3jA 352 21.43 b.35.1.2,c.2.1.1 24765,29781 1ox0A 430 21.45 c.95.1.1,c.95.1.1 87495,87496 1rxyA 253 21.52 c.56.2.1 98065 1edg 380 21.87 1ceo 343 23.10 1vhwA 253 23.30 c.56.2.1 100706 1eqcA 394 23.35 c.1.8.3 28811 2dx6A 159 23.59 1hzdA 272 23.84 c.14.1.3 65969 1vmkA 277 24.54 c.56.2.1 113680 2eaxA 164 25.59 1js3A 486 25.66 c.67.1.6 67215 2c2nA 339 25.91 1x92A 199 27.33 c.80.1.3 114976 1to6A 371 29.59 c.141.1.1 107170 1bqcA 302 29.69 c.1.8.3 28831 1k6xA 352 30.37 c.2.1.2 68238 2liv 344 31.87 1ajsA 412 32.52 c.67.1.1 34276 1e9lA 377 32.69 c.1.8.5,d.26.3.1 59395,59396 1bdbA 277 32.84 c.2.1.2 29874 2citA 282 32.91 c.1.8.3 130499 1fpzA 212 33.24 c.45.1.1 59976 1j0aA 325 33.48 c.79.1.1 83871 2ax4A 198 33.60 3c8uA 208 33.69 2eavA 165 33.72 2pc8A 400 33.85 1o8uA 257 34.52 c.14.1.3 81194 1rwtA 232 34.84 f.43.1.1 97992 1e8cA 498 35.11 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1eyeA 280 36.17 c.1.21.1 29672 2c0hA 353 36.35 c.1.8.3 129594 1fobA 334 36.55 c.1.8.3 83255 1wb0A 445 38.11 c.1.8.5,d.26.3.1 120825,120826 2cuyA 305 38.21 2yvaA 196 38.50 2df8A 325 38.74 1o58A 303 38.89 c.79.1.1 92491 1sxrA 183 38.97 d.118.1.1 106101 2a3nA 355 39.34 1j5xA 342 39.60 c.80.1.1 71591 1vpqA 273 39.65 c.1.32.1 113974 1hdoA 206 39.77 c.2.1.2 60965 2ppyA 265 40.19 1usgA 346 40.25 c.93.1.1 99864 2nm0A 253 40.60 1ri5A 298 40.98 c.66.1.34 97502 2ozlA 365 41.07 2gkoA 309 41.25 1j3gA 187 41.42 d.118.1.1 77075 1szoA 257 41.42 c.14.1.3 106164 1tvnA 293 41.89 c.1.8.3 119360 2z98A 200 42.33 1fh9A 312 42.59 c.1.8.3 28913 1j6oA 268 43.74 c.1.9.12 77088 1owqA 361 43.75 c.1.8.5,d.26.3.1 104041,104042 1lfaA 187 43.93 c.62.1.1 34122 1mjnA 179 44.03 c.62.1.1 79210 1m7yA 435 44.49 c.67.1.4 78761 2rkqA 169 44.50 1uf3A 228 44.76 d.159.1.6 99317 1f0kA 364 45.22 c.87.1.2 35465 2qtwB 546 46.02 1l1eA 287 46.87 c.66.1.18 73454 2amjA 204 46.92 2pqmA 343 47.58 2dri 271 47.71 1vp4A 425 47.79 c.67.1.1 113935 1gu7A 364 48.13 b.35.1.2,c.2.1.1 83321,83322 2ghcX 261 48.83 1vf8A 377 49.67 c.1.8.5,d.26.3.1 120029,120030 3ctpA 330 49.95 2f2lX 167 50.08 d.118.1.1 132844 1dorA 311 50.74 c.1.4.1 28595 1z15A 344 50.94 1kbjA 412 51.11 c.1.4.1 72280 2ohhA 404 51.32 1tikA 213 51.66 c.23.5.3 107003 1yt8A 539 51.91 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1ohtA 215 52.40 d.118.1.1 87036 2ffiA 288 52.53 c.1.9.15 133385 2fk8A 318 52.85 c.66.1.18 133648 1es9A 232 56.30 c.23.10.3 31340 1h1nA 305 56.92 c.1.8.3 70855 1vcoA 550 56.96 c.23.16.1,c.37.1.10 108508,108509 1yn9A 169 59.14 2dvtA 327 59.14 c.1.9.15 131793 2gwgA 350 60.89 c.1.9.15 135805 1qe5A 266 61.12 c.56.2.1 33784 8abp 306 61.20 2jfgA 445 62.00 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1d3gA 367 62.31 c.1.4.1 28600 1nzyA 269 62.70 c.14.1.3 30903 1ceoA 343 63.30 c.1.8.3 28808 1vp8A 201 64.45 c.49.1.2 113947 1b8gA 429 66.19 c.67.1.4 34499 2p3rA 510 67.15 c.55.1.4,c.55.1.4 139471,139472 2ozlB 341 67.31 c.36.1.7,c.48.1.2 139447,139448 1v6tA 255 68.74 c.6.2.5 113550 2zf5O 497 69.34 2hx1A 284 69.35 1uhvA 500 69.47 b.71.1.2,c.1.8.3 99402,99403 1qs0A 407 69.76 c.36.1.11 31829 2qahA 303 69.88 1jxhA 288 72.15 c.72.1.2 67415 1oheA 348 72.25 c.45.1.1,c.45.1.1 87013,87014 2a5vA 213 72.35 1wz8A 264 73.55 c.14.1.3 121483 1pmmA 466 73.86 c.67.1.6 94901 2osxA 481 74.15 1z7yA 322 74.32 c.79.1.1 124679 1sg4A 260 75.43 c.14.1.3 118957 1xyzA 347 75.71 c.1.8.3 28804 7a3hA 303 76.49 c.1.8.3 28817 1vd6A 224 77.38 c.1.18.3 119991 2os5A 119 77.49 1gciA 269 77.97 c.41.1.1 32503 1qw9A 502 78.43 b.71.1.2,c.1.8.3 96466,96467 1b63A 333 78.67 d.14.1.3,d.122.1.2 37566,41107 7aatA 401 78.69 c.67.1.1 34250 1ivnA 190 78.81 c.23.10.5 83719 1xm7A 195 78.99 d.159.1.8 115473 2d51A 406 80.32 1nulA 152 80.67 c.61.1.1 34011 1rttA 193 81.73 c.23.5.4 105098 1v72A 356 82.20 c.67.1.1 119860 2ixtA 310 82.47 2o55A 258 83.24 2bzsA 236 83.98 c.23.5.3 129560 1ockA 412 84.10 c.117.1.1 86802 2h1yA 321 84.81 1gy8A 397 85.61 c.2.1.2 83376 1jx6A 342 86.37 c.93.1.1 67406 1pjhA 280 86.79 c.14.1.3 94761 1g2oA 268 86.99 c.56.2.1 60228 2bgxA 261 87.13 a.20.1.1,d.118.1.1 128504,128505 1yu6A 275 87.20 c.41.1.1 124040 1w24A 182 87.73 d.159.1.7 120579 1qrrA 394 88.20 c.2.1.2 29824 2i7gA 376 89.05