# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 1.18e-26 2z3zA 706 5.59e-26 2hu5A 582 2.58e-25 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 3.73e-24 b.70.3.1,c.69.1.24 87354,87355 1qfmA 710 6.97e-24 b.69.7.1,c.69.1.4 27673,34641 1o6gA 710 7.80e-24 b.69.7.1,c.69.1.4 81087,81088 1h2wA 710 1.12e-23 b.69.7.1,c.69.1.4 76596,76597 1xfdA 723 2.72e-23 b.70.3.1,c.69.1.24 115251,115252 2qm0A 275 1.20e-22 2bklA 695 1.82e-22 1yr2A 741 1.92e-22 2uz0A 263 1.92e-22 3c8dA 403 4.70e-22 1vlqA 337 2.34e-21 c.69.1.25 108848 1l7aA 318 3.05e-21 c.69.1.25 77772 2b20A 403 3.12e-21 b.1.18.20,c.69.1.2 127685,127686 2jbwA 386 6.06e-21 2gzsA 278 8.41e-21 1wb4A 297 1.15e-20 c.69.1.2 120827 2r8bA 251 1.28e-20 3b5eA 223 1.88e-20 1pv1A 299 2.26e-20 c.69.1.34 111639 2i3dA 249 4.33e-20 1f0nA 285 5.05e-20 c.69.1.3 34636 2o2gA 223 1.92e-19 1jjfA 268 1.94e-19 c.69.1.2 66765 1ycdA 243 3.38e-19 1fj2A 232 3.71e-19 c.69.1.14 34720 1zi8A 236 3.89e-19 1lzlA 323 5.84e-19 c.69.1.2 78306 1jfrA 262 1.21e-18 c.69.1.16 34724 1din 236 1.67e-18 3bxpA 277 1.92e-18 2fx5A 258 2.85e-18 2fukA 220 3.87e-18 1auoA 218 4.18e-18 c.69.1.14 34716 1thg 544 5.75e-18 1jjiA 311 7.01e-18 c.69.1.2 66766 1ea5A 537 7.27e-18 c.69.1.1 34592 1ufoA 238 8.06e-18 c.69.1.27 99344 1p0iA 529 8.65e-18 c.69.1.1 93867 1u4nA 310 9.66e-18 c.69.1.2 113021 1qe3A 489 1.03e-17 c.69.1.1 34630 1dqzA 280 1.77e-17 c.69.1.3 34638 1r88A 280 3.18e-17 c.69.1.3 97219 1cleA 534 4.80e-17 c.69.1.17 34771 1ukcA 522 7.71e-17 c.69.1.17 107911 1vkhA 273 9.93e-17 c.69.1.32 108662 1llfA 534 1.04e-16 c.69.1.17 78094 1mpxA 615 1.81e-16 b.18.1.13,c.69.1.21 85041,85042 2hdwA 367 1.94e-16 2bce 581 1.72e-15 2pblA 262 2.31e-15 1ju3A 583 1.73e-14 b.18.1.13,c.69.1.21 67300,67301 1j1iA 296 5.20e-14 c.69.1.10 83977 1imjA 210 5.32e-14 c.69.1.23 71246 2hm7A 310 8.69e-14 1wm1A 317 1.55e-13 c.69.1.7 109405 1q0rA 298 1.98e-13 c.69.1.28 95508 1u2eA 289 2.08e-13 1ede 310 4.19e-13 1jkmA 358 4.37e-13 c.69.1.2 34633 1c4xA 285 6.35e-13 c.69.1.10 34684 1va4A 279 6.72e-13 c.69.1.12 108458 1hlgA 371 7.05e-13 c.69.1.6 34656 1b6g 310 7.36e-13 1qtrA 317 7.76e-13 c.69.1.7 34660 1lnsA 763 7.87e-13 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1uk8A 282 7.98e-13 c.69.1.10 107907 1yasA 257 1.05e-12 c.69.1.20 34801 1k8qA 377 1.07e-12 c.69.1.6 72177 1ehyA 294 1.08e-12 c.69.1.11 34693 1a88A 275 1.27e-12 c.69.1.12 34707 1mtzA 293 1.28e-12 c.69.1.7 79467 1brt 277 1.31e-12 1bn7A 294 1.34e-12 c.69.1.8 34677 1zd3A 555 1.35e-12 c.108.1.2,c.69.1.11 124930,124931 1broA 277 1.61e-12 c.69.1.12 34700 2o7rA 338 1.90e-12 1tqhA 247 2.42e-12 c.69.1.29 107225 1azwA 313 2.97e-12 c.69.1.7 34658 1qj4A 257 2.99e-12 c.69.1.20 34796 1m33A 258 3.24e-12 c.69.1.26 78514 3bdiA 207 4.04e-12 2h7cA 542 6.14e-12 c.69.1.1 136207 1hkhA 279 6.51e-12 c.69.1.12 90628 2veoA 441 6.83e-12 2qjwA 176 7.52e-12 1womA 271 7.60e-12 1r1dA 247 9.84e-12 c.69.1.29 96813 1xklA 273 1.09e-11 c.69.1.20 115410 1xqwA 293 1.16e-11 2cjpA 328 1.40e-11 2r11A 306 1.44e-11 1zoiA 276 1.57e-11 2rhwA 283 1.90e-11 2og1A 286 2.24e-11 1tca 317 2.47e-11 1mnaA 298 2.60e-11 c.69.1.22 79322 3c5vA 316 2.95e-11 2ocgA 254 3.09e-11 1uxoA 192 3.34e-11 c.69.1.31 108121 1mj5A 302 3.78e-11 c.69.1.8 91285 2b61A 377 4.03e-11 1cv2A 296 4.17e-11 c.69.1.8 34680 2puhA 286 4.23e-11 2pujA 286 5.44e-11 2ogtA 498 5.60e-11 1ei9A 279 8.55e-11 c.69.1.13 34713 1a8sA 273 1.04e-10 c.69.1.12 34710 2e3jA 356 1.32e-10 2qmqA 286 1.48e-10 1b6gA 310 2.21e-10 c.69.1.8 34661 3bwxA 285 2.48e-10 1a8qA 274 2.51e-10 c.69.1.12 34702 2psdA 318 2.66e-10 1brtA 277 3.10e-10 c.69.1.12 34699 3bf7A 255 3.15e-10 1qo7A 394 3.73e-10 c.69.1.11 34697 2qruA 274 4.87e-10 1tcaA 317 4.89e-10 c.69.1.17 34726 2yysA 286 4.93e-10 2qs9A 194 5.15e-10 1bu8A 452 5.20e-10 b.12.1.2,c.69.1.19 23647,34795 3bdvA 191 5.68e-10 1gpl 432 6.73e-10 1r3dA 264 7.64e-10 c.69.1.35 111680 1pjaA 302 8.32e-10 c.69.1.13 94758 2qvbA 297 1.16e-09 1y37A 304 1.30e-09 2rauA 354 1.48e-09 2o2iA 300 1.54e-09 1thgA 544 2.12e-09 c.69.1.17 34763 1qlwA 328 2.77e-09 c.69.1.15 34722 2pl5A 366 3.01e-09 1jmkC 230 3.15e-09 c.69.1.22 71747 1ys1X 320 6.24e-09 1cvl 319 7.34e-09 3bixA 574 1.36e-08 2bceA 585 1.48e-08 c.69.1.1 34625 2d80A 318 3.23e-08 2hfkA 319 5.61e-08 1cvlA 319 6.53e-08 c.69.1.18 34786 2cb9A 244 9.71e-08 1hplA 449 1.78e-07 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 2.07e-07 2d81A 318 1.64e-06 2px6A 316 2.05e-06 1ispA 181 3.87e-06 c.69.1.18 76778 1ivyA 452 5.86e-06 c.69.1.5 34654 1gt6A 269 7.56e-06 c.69.1.17 76342 1i6wA 181 9.74e-06 c.69.1.18 61859 1ac5 483 1.19e-05 1ac5A 483 4.16e-05 c.69.1.5 34653 1tib 269 4.39e-05 1tibA 269 8.31e-05 c.69.1.17 34738 3tglA 269 0.000206 c.69.1.17 34733 1uwcA 261 0.000233 c.69.1.17 100101 2z5gA 387 0.000439 2bjhA 260 0.000825 1cexA 214 0.01113 c.69.1.30 31285 1cex 214 0.01638 1thtA 305 0.03660 c.69.1.13 34711 2dsnA 387 0.04502 1whtA 256 0.04545 c.69.1.5 34646 1whsA 255 0.05876 c.69.1.5 34649 2oryA 346 0.3211 2czqA 205 0.5406 2csuA 457 0.5931 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1whtB 153 0.8155 1whsB 153 0.9136 2v9cA 215 1.593 1qnrA 344 1.766 c.1.8.3 28834 2bv9A 290 1.968 c.1.8.3 129242 1g66A 207 2.128 c.69.1.30 31329 1pswA 348 2.325 c.87.1.7 88287 1ku0A 388 2.844 c.69.1.18 72994 1g0cA 364 4.712 c.1.8.3 60165 2q09A 416 5.442 2hpvA 208 5.663 1vflA 356 5.748 c.1.9.1 120041 2gt1A 326 7.138 1m22A 503 7.328 c.117.1.1 78464 2bfgA 503 7.712 b.71.1.2,c.1.8.3 128423,128424 1yb0A 159 8.491 d.118.1.1 122865 2q4zA 312 8.837 2ob3A 330 9.317 1eiwA 111 10.31 c.23.3.1 31130 1tyfA 193 10.38 c.14.1.1 30885 2f6kA 307 10.71 c.1.9.15 133047 2q62A 247 11.31 2v3gA 283 11.84 2cksA 306 12.11 3clwA 507 12.79 1itxA 419 13.48 c.1.8.5,d.26.3.1 71425,71426 2eaxA 164 16.02 2i2wA 212 16.18 1w1iE 357 16.39 c.1.9.1 109051 1e3jA 352 17.01 b.35.1.2,c.2.1.1 24765,29781 1eceA 358 17.28 c.1.8.3 28813 1tk9A 188 17.83 c.80.1.3 107082 3c8uA 208 18.32 2jg2A 422 19.42 1db3A 372 19.61 c.2.1.2 29813 1ceo 343 20.06 1gudA 288 20.65 c.93.1.1 83326 1rxyA 253 21.31 c.56.2.1 98065 2ax4A 198 21.52 1zowA 313 22.17 2z98A 200 22.41 1bdbA 277 23.47 c.2.1.2 29874 1edg 380 23.63 1k6xA 352 23.77 c.2.1.2 68238 1hzdA 272 24.76 c.14.1.3 65969 1eqcA 394 25.78 c.1.8.3 28811 1w85A 368 26.54 c.36.1.11 114335 2eavA 165 26.58 1gewA 356 26.68 c.67.1.1 60470 2dx6A 159 27.25 1rwtA 232 27.83 f.43.1.1 97992 1x92A 199 28.50 c.80.1.3 114976 2pqmA 343 28.56 1tikA 213 29.08 c.23.5.3 107003 1sxrA 183 29.12 d.118.1.1 106101 2c0hA 353 31.27 c.1.8.3 129594 2amjA 204 31.74 1gu7A 364 31.80 b.35.1.2,c.2.1.1 83321,83322 1fpzA 212 32.11 c.45.1.1 59976 1vjzA 341 32.51 c.1.8.3 100838 1e8cA 498 32.65 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1eyeA 280 33.94 c.1.21.1 29672 1wb0A 445 34.17 c.1.8.5,d.26.3.1 120825,120826 2nm0A 253 34.36 1e9lA 377 34.64 c.1.8.5,d.26.3.1 59395,59396 1hdoA 206 34.70 c.2.1.2 60965 2pc8A 400 35.03 1lfaA 187 35.15 c.62.1.1 34122 1o58A 303 35.57 c.79.1.1 92491 2liv 344 35.58 1js3A 486 35.75 c.67.1.6 67215 2yvaA 196 36.07 1vhwA 253 36.60 c.56.2.1 100706 2a3nA 355 36.78 1ox0A 430 37.26 c.95.1.1,c.95.1.1 87495,87496 2c2nA 339 37.40 2df8A 325 37.41 1o8uA 257 38.17 c.14.1.3 81194 2dvtA 327 39.06 c.1.9.15 131793 1f0kA 364 39.21 c.87.1.2 35465 1vmkA 277 39.46 c.56.2.1 113680 2f2lX 167 39.52 d.118.1.1 132844 1to6A 371 40.15 c.141.1.1 107170 1j5xA 342 40.22 c.80.1.1 71591 2ppyA 265 42.60 1owqA 361 43.15 c.1.8.5,d.26.3.1 104041,104042 1j0aA 325 43.81 c.79.1.1 83871 1fobA 334 44.52 c.1.8.3 83255 1vp4A 425 44.97 c.67.1.1 113935 1kbjA 412 45.16 c.1.4.1 72280 2rkqA 169 45.46 1szoA 257 46.14 c.14.1.3 106164 1ohtA 215 46.86 d.118.1.1 87036 1vf8A 377 47.05 c.1.8.5,d.26.3.1 120029,120030 1fh9A 312 47.22 c.1.8.3 28913 2citA 282 48.63 c.1.8.3 130499 1mjnA 179 50.02 c.62.1.1 79210 1dorA 311 51.06 c.1.4.1 28595 2ozlA 365 51.39 1j6oA 268 51.86 c.1.9.12 77088 1gciA 269 52.85 c.41.1.1 32503 1qw9A 502 52.96 b.71.1.2,c.1.8.3 96466,96467 2jfgA 445 53.39 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1z7yA 322 53.70 c.79.1.1 124679 1usgA 346 54.22 c.93.1.1 99864 1rttA 193 54.78 c.23.5.4 105098 2ffiA 288 55.10 c.1.9.15 133385 2hx1A 284 56.14 2ohhA 404 56.54 3ctpA 330 56.58 1bqcA 302 56.70 c.1.8.3 28831 1vpqA 273 57.47 c.1.32.1 113974 2dri 271 57.53 1j3gA 187 59.78 d.118.1.1 77075 1vp8A 201 59.81 c.49.1.2 113947 1ajsA 412 60.16 c.67.1.1 34276 1nzyA 269 60.54 c.14.1.3 30903 1h1nA 305 61.29 c.1.8.3 70855 1oheA 348 61.32 c.45.1.1,c.45.1.1 87013,87014 2ozlB 341 62.60 c.36.1.7,c.48.1.2 139447,139448 2p3rA 510 62.92 c.55.1.4,c.55.1.4 139471,139472 2gkoA 309 63.31 1vcoA 550 63.78 c.23.16.1,c.37.1.10 108508,108509 2zf5O 497 64.17 1yt8A 539 64.47 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1d3gA 367 65.00 c.1.4.1 28600 1ri5A 298 65.97 c.66.1.34 97502 2qtwB 546 66.22 2bgxA 261 66.38 a.20.1.1,d.118.1.1 128504,128505 2qahA 303 67.46 2bzsA 236 68.14 c.23.5.3 129560 1jxhA 288 68.45 c.72.1.2 67415 2qwxA 231 68.64 1uf3A 228 68.70 d.159.1.6 99317 2ghcX 261 68.73 1qe5A 266 69.62 c.56.2.1 33784 1es9A 232 69.79 c.23.10.3 31340 1m7yA 435 69.88 c.67.1.4 78761 1ceoA 343 70.72 c.1.8.3 28808 1yn9A 169 71.08 1z15A 344 71.45 1f89A 291 71.79 d.160.1.1 64988 1hjxA 362 71.96 c.1.8.5,d.26.3.1 83512,83513 1edtA 271 72.82 c.1.8.5 28993 1yjsA 419 73.35 c.67.1.4 123461 3co4A 312 73.90 1g60A 260 74.17 c.66.1.11 70151 1vd6A 224 74.51 c.1.18.3 119991 1wz8A 264 75.30 c.14.1.3 121483 1tvnA 293 75.40 c.1.8.3 119360 1b3bA 415 76.52 c.2.1.7,c.58.1.1 30244,33892 1ydgA 211 76.89 c.23.5.8 116614 1l1eA 287 77.10 c.66.1.18 73454 1d4aA 273 77.58 c.23.5.3 31219 1dhr 241 78.89 2gwgA 350 79.17 c.1.9.15 135805 1nulA 152 79.54 c.61.1.1 34011 1uwvA 433 79.60 b.40.4.12,c.66.1.40 100128,100129 1yu6A 275 79.71 c.41.1.1 124040 1wr8A 231 80.48 c.108.1.10 114836 2r6hA 290 81.38 1t0iA 191 81.52 c.23.5.4 106209 1sg4A 260 81.58 c.14.1.3 118957 1v72A 356 83.49 c.67.1.1 119860 1h4pA 408 83.88 c.1.8.3 90617 2os5A 119 84.69 2fwmX 250 85.01 1xyzA 347 86.01 c.1.8.3 28804 1b63A 333 86.25 d.14.1.3,d.122.1.2 37566,41107 2d51A 406 86.47 2h1yA 321 86.53 2cuyA 305 86.58 1vgyA 393 87.26 c.56.5.4,d.58.19.1 100620,100621 1zzmA 259 87.35 c.1.9.12 125911 2ixtA 310 88.74 2grjA 192 89.73