# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 4.30e-27 2hu5A 582 9.11e-27 b.69.7.2,c.69.1.33 136763,136764 2z3zA 706 1.12e-26 1orvA 728 1.22e-24 b.70.3.1,c.69.1.24 87354,87355 1qfmA 710 1.33e-24 b.69.7.1,c.69.1.4 27673,34641 1o6gA 710 2.09e-24 b.69.7.1,c.69.1.4 81087,81088 1h2wA 710 2.84e-24 b.69.7.1,c.69.1.4 76596,76597 1xfdA 723 6.04e-24 b.70.3.1,c.69.1.24 115251,115252 2qm0A 275 1.59e-23 3c8dA 403 5.75e-23 1yr2A 741 6.20e-23 2uz0A 263 7.51e-23 2bklA 695 8.13e-23 2b20A 403 4.12e-22 b.1.18.20,c.69.1.2 127685,127686 1vlqA 337 6.81e-22 c.69.1.25 108848 2gzsA 278 1.59e-21 1l7aA 318 1.75e-21 c.69.1.25 77772 1wb4A 297 2.10e-21 c.69.1.2 120827 2jbwA 386 3.12e-21 2r8bA 251 7.33e-21 3b5eA 223 9.97e-21 1f0nA 285 1.30e-20 c.69.1.3 34636 2i3dA 249 2.79e-20 1pv1A 299 3.35e-20 c.69.1.34 111639 1jjfA 268 5.56e-20 c.69.1.2 66765 1ycdA 243 9.10e-20 1lzlA 323 1.82e-19 c.69.1.2 78306 2o2gA 223 2.29e-19 1zi8A 236 3.24e-19 1fj2A 232 3.26e-19 c.69.1.14 34720 3bxpA 277 6.61e-19 1jfrA 262 7.37e-19 c.69.1.16 34724 1din 236 8.45e-19 1auoA 218 1.60e-18 c.69.1.14 34716 2fx5A 258 1.65e-18 1jjiA 311 3.61e-18 c.69.1.2 66766 1thg 544 4.02e-18 1u4nA 310 4.40e-18 c.69.1.2 113021 1ufoA 238 5.31e-18 c.69.1.27 99344 2fukA 220 5.38e-18 1p0iA 529 6.12e-18 c.69.1.1 93867 1qe3A 489 6.55e-18 c.69.1.1 34630 1ea5A 537 1.09e-17 c.69.1.1 34592 1dqzA 280 1.43e-17 c.69.1.3 34638 1r88A 280 2.21e-17 c.69.1.3 97219 1vkhA 273 2.95e-17 c.69.1.32 108662 1cleA 534 5.62e-17 c.69.1.17 34771 1ukcA 522 1.94e-16 c.69.1.17 107911 2hdwA 367 2.64e-16 1llfA 534 3.25e-16 c.69.1.17 78094 1mpxA 615 4.91e-16 b.18.1.13,c.69.1.21 85041,85042 2pblA 262 1.42e-15 2bce 581 2.59e-15 1ju3A 583 1.48e-14 b.18.1.13,c.69.1.21 67300,67301 1imjA 210 4.13e-14 c.69.1.23 71246 2hm7A 310 8.14e-14 1j1iA 296 1.01e-13 c.69.1.10 83977 1wm1A 317 1.28e-13 c.69.1.7 109405 1q0rA 298 2.71e-13 c.69.1.28 95508 1lnsA 763 3.06e-13 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1jkmA 358 3.90e-13 c.69.1.2 34633 1c4xA 285 5.32e-13 c.69.1.10 34684 1ede 310 5.73e-13 1b6g 310 6.41e-13 1u2eA 289 6.74e-13 1qtrA 317 8.47e-13 c.69.1.7 34660 1uk8A 282 1.07e-12 c.69.1.10 107907 1bn7A 294 1.51e-12 c.69.1.8 34677 1yasA 257 1.55e-12 c.69.1.20 34801 1va4A 279 1.55e-12 c.69.1.12 108458 2o7rA 338 1.73e-12 1azwA 313 1.77e-12 c.69.1.7 34658 1ehyA 294 1.83e-12 c.69.1.11 34693 1k8qA 377 1.91e-12 c.69.1.6 72177 1hlgA 371 2.23e-12 c.69.1.6 34656 1mtzA 293 2.58e-12 c.69.1.7 79467 1a88A 275 2.97e-12 c.69.1.12 34707 2veoA 441 4.61e-12 1qj4A 257 4.76e-12 c.69.1.20 34796 1tqhA 247 4.82e-12 c.69.1.29 107225 1broA 277 5.07e-12 c.69.1.12 34700 1brt 277 5.35e-12 1zd3A 555 7.57e-12 c.108.1.2,c.69.1.11 124930,124931 3bdiA 207 8.61e-12 1womA 271 8.62e-12 1m33A 258 1.08e-11 c.69.1.26 78514 2qjwA 176 1.20e-11 1xklA 273 1.29e-11 c.69.1.20 115410 2h7cA 542 1.78e-11 c.69.1.1 136207 2r11A 306 1.93e-11 2ocgA 254 2.39e-11 1xqwA 293 2.46e-11 1r1dA 247 2.64e-11 c.69.1.29 96813 1tca 317 2.74e-11 2b61A 377 2.81e-11 3c5vA 316 3.21e-11 2cjpA 328 3.41e-11 2rhwA 283 3.89e-11 1hkhA 279 3.99e-11 c.69.1.12 90628 2og1A 286 4.53e-11 1mj5A 302 5.44e-11 c.69.1.8 91285 1cv2A 296 6.76e-11 c.69.1.8 34680 1uxoA 192 7.28e-11 c.69.1.31 108121 1mnaA 298 8.85e-11 c.69.1.22 79322 2puhA 286 8.93e-11 2pujA 286 1.12e-10 1zoiA 276 1.23e-10 1b6gA 310 1.58e-10 c.69.1.8 34661 2e3jA 356 1.59e-10 1ei9A 279 1.65e-10 c.69.1.13 34713 2ogtA 498 1.82e-10 1a8sA 273 2.95e-10 c.69.1.12 34710 2qmqA 286 3.16e-10 3bwxA 285 3.61e-10 3bdvA 191 3.89e-10 2qruA 274 3.94e-10 2yysA 286 4.00e-10 2qs9A 194 4.12e-10 2psdA 318 4.21e-10 3bf7A 255 4.90e-10 1brtA 277 5.69e-10 c.69.1.12 34699 1a8qA 274 8.66e-10 c.69.1.12 34702 1pjaA 302 8.73e-10 c.69.1.13 94758 1tcaA 317 9.37e-10 c.69.1.17 34726 1qo7A 394 1.14e-09 c.69.1.11 34697 1bu8A 452 2.05e-09 b.12.1.2,c.69.1.19 23647,34795 1y37A 304 2.06e-09 1r3dA 264 2.14e-09 c.69.1.35 111680 2pl5A 366 2.38e-09 1qlwA 328 2.43e-09 c.69.1.15 34722 2qvbA 297 2.47e-09 2o2iA 300 3.65e-09 1jmkC 230 3.94e-09 c.69.1.22 71747 2rauA 354 4.25e-09 1thgA 544 4.43e-09 c.69.1.17 34763 1gpl 432 6.21e-09 1ys1X 320 8.97e-09 1cvl 319 1.07e-08 2d80A 318 4.42e-08 3bixA 574 4.70e-08 1cvlA 319 5.24e-08 c.69.1.18 34786 2bceA 585 7.36e-08 c.69.1.1 34625 2hfkA 319 1.13e-07 2cb9A 244 1.34e-07 2q0xA 335 4.56e-07 1hplA 449 8.67e-07 b.12.1.2,c.69.1.19 23639,34787 2d81A 318 3.47e-06 2px6A 316 6.95e-06 1ispA 181 7.27e-06 c.69.1.18 76778 1ac5 483 8.37e-06 1ivyA 452 1.56e-05 c.69.1.5 34654 1gt6A 269 2.48e-05 c.69.1.17 76342 1i6wA 181 2.58e-05 c.69.1.18 61859 1ac5A 483 3.02e-05 c.69.1.5 34653 1tibA 269 0.000110 c.69.1.17 34738 1tib 269 0.000134 1uwcA 261 0.000251 c.69.1.17 100101 2z5gA 387 0.000512 2bjhA 260 0.001180 3tglA 269 0.002295 c.69.1.17 34733 2dsnA 387 0.03698 1cexA 214 0.06161 c.69.1.30 31285 1thtA 305 0.06457 c.69.1.13 34711 1whtA 256 0.08673 c.69.1.5 34646 1whsA 255 0.1078 c.69.1.5 34649 2oryA 346 0.1508 1cex 214 0.1681 1whtB 153 0.997 1whsB 153 1.055 2csuA 457 1.791 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1ku0A 388 2.413 c.69.1.18 72994 1qnrA 344 3.223 c.1.8.3 28834 2cksA 306 4.478 1g0cA 364 5.190 c.1.8.3 60165 1vflA 356 5.243 c.1.9.1 120041 2bv9A 290 5.254 c.1.8.3 129242 2q4zA 312 5.622 2pc8A 400 5.948 1itxA 419 6.233 c.1.8.5,d.26.3.1 71425,71426 2czqA 205 6.379 1eceA 358 6.793 c.1.8.3 28813 2jg2A 422 6.927 1g66A 207 9.485 c.69.1.30 31329 2v9cA 215 9.496 1w1iE 357 9.866 c.1.9.1 109051 2gt1A 326 10.32 1vhwA 253 10.97 c.56.2.1 100706 1tyfA 193 12.90 c.14.1.1 30885 1m22A 503 13.58 c.117.1.1 78464 2ob3A 330 14.87 2ohhA 404 15.19 1gudA 288 15.66 c.93.1.1 83326 2hpvA 208 15.75 1e3jA 352 15.89 b.35.1.2,c.2.1.1 24765,29781 1ctn 540 15.97 1pswA 348 15.98 c.87.1.7 88287 1eiwA 111 16.29 c.23.3.1 31130 2q09A 416 16.59 1ceo 343 16.59 2bmaA 470 16.99 2a3nA 355 17.02 1yt8A 539 18.31 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1yb0A 159 20.07 d.118.1.1 122865 2rkqA 169 20.13 3clwA 507 20.57 1k6xA 352 20.98 c.2.1.2 68238 1gu7A 364 22.28 b.35.1.2,c.2.1.1 83321,83322 1wb0A 445 23.71 c.1.8.5,d.26.3.1 120825,120826 2dri 271 24.63 2i2wA 212 25.25 1rxyA 253 26.14 c.56.2.1 98065 1edg 380 26.67 2i7gA 376 27.09 1hzdA 272 27.86 c.14.1.3 65969 2q62A 247 27.87 1hdoA 206 28.12 c.2.1.2 60965 2f6kA 307 28.80 c.1.9.15 133047 2liv 344 28.85 2v3gA 283 29.42 1xyzA 347 29.48 c.1.8.3 28804 1j0aA 325 29.98 c.79.1.1 83871 3ctpA 330 30.88 1fh9A 312 31.27 c.1.8.3 28913 1lfaA 187 32.55 c.62.1.1 34122 1eqcA 394 33.73 c.1.8.3 28811 1e9lA 377 34.12 c.1.8.5,d.26.3.1 59395,59396 1qh8A 478 34.13 c.92.2.3 35633 2vjxA 846 34.39 1tk9A 188 35.41 c.80.1.3 107082 2o55A 258 36.27 2pqmA 343 37.10 1pixA 587 37.54 c.14.1.4,c.14.1.4 118578,118579 2dx6A 159 38.16 1usgA 346 38.29 c.93.1.1 99864 2z2uA 311 38.51 2grjA 192 39.28 1bdbA 277 39.63 c.2.1.2 29874 1zowA 313 39.82 1x13A 401 40.51 1ceoA 343 40.63 c.1.8.3 28808 1f89A 291 41.07 d.160.1.1 64988 2eaxA 164 41.89 2c2nA 339 42.68 1tvnA 293 45.68 c.1.8.3 119360 1vf8A 377 47.90 c.1.8.5,d.26.3.1 120029,120030 1z15A 344 47.95 1mjnA 179 48.33 c.62.1.1 79210 1jx6A 342 48.77 c.93.1.1 67406 1x92A 199 49.63 c.80.1.3 114976 1vp8A 201 49.69 c.49.1.2 113947 1moqA 368 50.07 c.80.1.1 35302 8abp 306 51.60 2nm0A 253 51.83 1c93A 265 52.82 c.1.8.5 28998 1ka2A 499 55.55 d.92.1.5 77305 2bs9A 503 55.78 b.71.1.2,c.1.8.3 129062,129063 1e8cA 498 56.58 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2jfgA 445 57.03 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2h00A 254 57.18 c.66.1.54 135925 2d51A 406 57.89 1v6tA 255 58.16 c.6.2.5 113550 1gewA 356 58.34 c.67.1.1 60470 1ox0A 430 59.97 c.95.1.1,c.95.1.1 87495,87496 1to6A 371 60.68 c.141.1.1 107170 1ohtA 215 61.88 d.118.1.1 87036 3c8uA 208 62.43 1o8uA 257 62.79 c.14.1.3 81194 1bgvA 449 64.63 c.2.1.7,c.58.1.1 30217,33865 1szoA 257 64.80 c.14.1.3 106164 1kbjA 412 67.32 c.1.4.1 72280 1xpkC 388 67.89 c.95.1.2,c.95.1.2 115747,115748 1rwtA 232 70.55 f.43.1.1 97992 1edqA 540 71.00 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1qw9A 502 71.08 b.71.1.2,c.1.8.3 96466,96467 1vbuA 328 71.62 c.1.8.3 119963 2bfgA 503 71.64 b.71.1.2,c.1.8.3 128423,128424 1pjhA 280 71.96 c.14.1.3 94761 1yhtA 367 73.23 c.1.8.6 123213 2z98A 200 73.70 2hx1A 284 73.90 1uwvA 433 75.79 b.40.4.12,c.66.1.40 100128,100129 1w6uA 302 76.00 c.2.1.2 114288 1uf3A 228 77.54 d.159.1.6 99317 1ajsA 412 77.67 c.67.1.1 34276 1kngA 156 78.49 c.47.1.10 72777 2c0hA 353 79.56 c.1.8.3 129594 2dskA 311 80.89 1ivnA 190 83.05 c.23.10.5 83719 2j5iA 276 83.19 2amxA 376 83.77 c.1.9.1 127024 3cs3A 277 84.33 2hqbA 296 84.92 1xm7A 195 86.55 d.159.1.8 115473 1wz8A 264 87.71 c.14.1.3 121483 1h4pA 408 88.20 c.1.8.3 90617 2e87A 357 88.35 1ockA 412 89.52 c.117.1.1 86802