# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 5.95e-26 2z3zA 706 2.29e-25 2hu5A 582 4.38e-25 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 9.08e-24 b.70.3.1,c.69.1.24 87354,87355 1qfmA 710 2.45e-23 b.69.7.1,c.69.1.4 27673,34641 1o6gA 710 3.10e-23 b.69.7.1,c.69.1.4 81087,81088 1xfdA 723 4.73e-23 b.70.3.1,c.69.1.24 115251,115252 1h2wA 710 5.06e-23 b.69.7.1,c.69.1.4 76596,76597 2qm0A 275 4.14e-22 3c8dA 403 7.49e-22 2uz0A 263 8.52e-22 1yr2A 741 8.98e-22 2bklA 695 1.16e-21 2b20A 403 8.41e-21 b.1.18.20,c.69.1.2 127685,127686 1vlqA 337 9.97e-21 c.69.1.25 108848 1l7aA 318 1.85e-20 c.69.1.25 77772 2jbwA 386 2.75e-20 2gzsA 278 2.93e-20 1wb4A 297 5.52e-20 c.69.1.2 120827 2r8bA 251 7.80e-20 1f0nA 285 1.30e-19 c.69.1.3 34636 3b5eA 223 1.36e-19 1pv1A 299 2.13e-19 c.69.1.34 111639 2i3dA 249 3.10e-19 1jjfA 268 6.83e-19 c.69.1.2 66765 1lzlA 323 1.03e-18 c.69.1.2 78306 2o2gA 223 2.15e-18 1ycdA 243 2.28e-18 1zi8A 236 2.36e-18 1fj2A 232 2.92e-18 c.69.1.14 34720 3bxpA 277 6.62e-18 2fx5A 258 7.63e-18 1din 236 7.95e-18 1jfrA 262 8.45e-18 c.69.1.16 34724 1auoA 218 1.01e-17 c.69.1.14 34716 1u4nA 310 2.29e-17 c.69.1.2 113021 1jjiA 311 2.72e-17 c.69.1.2 66766 1thg 544 2.72e-17 2fukA 220 3.16e-17 1ea5A 537 4.87e-17 c.69.1.1 34592 1p0iA 529 5.07e-17 c.69.1.1 93867 1qe3A 489 6.11e-17 c.69.1.1 34630 1ufoA 238 6.18e-17 c.69.1.27 99344 1dqzA 280 8.76e-17 c.69.1.3 34638 1r88A 280 1.13e-16 c.69.1.3 97219 1cleA 534 2.79e-16 c.69.1.17 34771 1vkhA 273 3.14e-16 c.69.1.32 108662 1ukcA 522 8.09e-16 c.69.1.17 107911 1llfA 534 9.87e-16 c.69.1.17 78094 1mpxA 615 1.05e-15 b.18.1.13,c.69.1.21 85041,85042 2hdwA 367 1.33e-15 2pblA 262 1.28e-14 2bce 581 1.54e-14 1ju3A 583 4.54e-14 b.18.1.13,c.69.1.21 67300,67301 1imjA 210 1.68e-13 c.69.1.23 71246 2hm7A 310 1.93e-13 1j1iA 296 3.78e-13 c.69.1.10 83977 1wm1A 317 4.74e-13 c.69.1.7 109405 1jkmA 358 8.14e-13 c.69.1.2 34633 1q0rA 298 1.12e-12 c.69.1.28 95508 1lnsA 763 1.13e-12 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ede 310 2.16e-12 1u2eA 289 2.27e-12 1b6g 310 2.70e-12 1c4xA 285 2.94e-12 c.69.1.10 34684 1qtrA 317 3.28e-12 c.69.1.7 34660 1uk8A 282 3.62e-12 c.69.1.10 107907 1bn7A 294 3.74e-12 c.69.1.8 34677 1va4A 279 3.76e-12 c.69.1.12 108458 1yasA 257 4.12e-12 c.69.1.20 34801 1hlgA 371 4.75e-12 c.69.1.6 34656 2o7rA 338 4.86e-12 1k8qA 377 4.97e-12 c.69.1.6 72177 1mtzA 293 5.44e-12 c.69.1.7 79467 1a88A 275 6.51e-12 c.69.1.12 34707 1azwA 313 7.08e-12 c.69.1.7 34658 1ehyA 294 8.16e-12 c.69.1.11 34693 1zd3A 555 8.36e-12 c.108.1.2,c.69.1.11 124930,124931 1brt 277 1.09e-11 1tqhA 247 1.16e-11 c.69.1.29 107225 1broA 277 1.31e-11 c.69.1.12 34700 1qj4A 257 1.51e-11 c.69.1.20 34796 1womA 271 1.98e-11 3bdiA 207 2.04e-11 2veoA 441 2.07e-11 1m33A 258 2.50e-11 c.69.1.26 78514 1r1dA 247 3.79e-11 c.69.1.29 96813 2qjwA 176 4.41e-11 1xqwA 293 4.48e-11 2h7cA 542 5.26e-11 c.69.1.1 136207 1hkhA 279 5.77e-11 c.69.1.12 90628 2r11A 306 6.12e-11 1xklA 273 6.14e-11 c.69.1.20 115410 2cjpA 328 7.37e-11 2rhwA 283 7.43e-11 3c5vA 316 9.24e-11 2ocgA 254 1.04e-10 1tca 317 1.09e-10 1mj5A 302 1.21e-10 c.69.1.8 91285 2og1A 286 1.24e-10 1cv2A 296 1.33e-10 c.69.1.8 34680 2b61A 377 1.50e-10 1zoiA 276 1.70e-10 2pujA 286 1.92e-10 2puhA 286 1.97e-10 1mnaA 298 3.07e-10 c.69.1.22 79322 2ogtA 498 3.24e-10 1uxoA 192 3.31e-10 c.69.1.31 108121 1a8sA 273 4.14e-10 c.69.1.12 34710 2e3jA 356 4.28e-10 1b6gA 310 4.78e-10 c.69.1.8 34661 1ei9A 279 5.22e-10 c.69.1.13 34713 2qmqA 286 7.43e-10 3bwxA 285 7.54e-10 1a8qA 274 7.86e-10 c.69.1.12 34702 1brtA 277 1.03e-09 c.69.1.12 34699 2psdA 318 1.08e-09 3bf7A 255 1.14e-09 2yysA 286 1.65e-09 1qo7A 394 1.83e-09 c.69.1.11 34697 2qruA 274 1.88e-09 2qs9A 194 2.02e-09 3bdvA 191 2.10e-09 1pjaA 302 2.39e-09 c.69.1.13 94758 1r3dA 264 2.61e-09 c.69.1.35 111680 1bu8A 452 2.61e-09 b.12.1.2,c.69.1.19 23647,34795 1tcaA 317 3.08e-09 c.69.1.17 34726 1gpl 432 3.34e-09 1y37A 304 4.84e-09 2rauA 354 4.97e-09 2qvbA 297 6.15e-09 1qlwA 328 7.26e-09 c.69.1.15 34722 2pl5A 366 8.02e-09 2o2iA 300 9.01e-09 1thgA 544 1.08e-08 c.69.1.17 34763 1ys1X 320 1.27e-08 1jmkC 230 1.52e-08 c.69.1.22 71747 1cvl 319 2.53e-08 2bceA 585 4.71e-08 c.69.1.1 34625 3bixA 574 5.39e-08 2d80A 318 1.10e-07 1cvlA 319 1.91e-07 c.69.1.18 34786 2hfkA 319 2.89e-07 2cb9A 244 3.41e-07 1hplA 449 8.71e-07 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 1.22e-06 2d81A 318 3.33e-06 1ispA 181 8.11e-06 c.69.1.18 76778 2px6A 316 1.04e-05 1i6wA 181 1.98e-05 c.69.1.18 61859 1ac5 483 2.25e-05 1ivyA 452 2.82e-05 c.69.1.5 34654 1gt6A 269 5.32e-05 c.69.1.17 76342 1ac5A 483 8.08e-05 c.69.1.5 34653 1tib 269 0.000259 1tibA 269 0.000277 c.69.1.17 34738 1uwcA 261 0.000602 c.69.1.17 100101 3tglA 269 0.000819 c.69.1.17 34733 2z5gA 387 0.000966 2bjhA 260 0.003042 1cexA 214 0.02752 c.69.1.30 31285 1thtA 305 0.05382 c.69.1.13 34711 1cex 214 0.06147 1whtA 256 0.07418 c.69.1.5 34646 2dsnA 387 0.08223 1whsA 255 0.1265 c.69.1.5 34649 2oryA 346 0.3527 2csuA 457 0.6429 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1whtB 153 0.8878 1whsB 153 1.001 1qnrA 344 1.416 c.1.8.3 28834 1g0cA 364 3.292 c.1.8.3 60165 1vflA 356 3.435 c.1.9.1 120041 2bv9A 290 4.160 c.1.8.3 129242 2cksA 306 4.358 1ku0A 388 4.402 c.69.1.18 72994 2czqA 205 4.530 1g66A 207 5.224 c.69.1.30 31329 2bfgA 503 8.209 b.71.1.2,c.1.8.3 128423,128424 1m22A 503 8.520 c.117.1.1 78464 1pswA 348 8.807 c.87.1.7 88287 2gt1A 326 9.010 1eceA 358 9.457 c.1.8.3 28813 1gudA 288 9.590 c.93.1.1 83326 2ob3A 330 9.861 2q4zA 312 10.01 1w1iE 357 10.51 c.1.9.1 109051 1tvnA 293 10.68 c.1.8.3 119360 1itxA 419 10.94 c.1.8.5,d.26.3.1 71425,71426 3clwA 507 11.29 2q09A 416 11.48 2pc8A 400 11.70 1eiwA 111 11.95 c.23.3.1 31130 1tyfA 193 12.13 c.14.1.1 30885 1ceo 343 13.33 2jg2A 422 13.45 2v9cA 215 13.84 1zowA 313 14.38 1edg 380 14.40 1vhwA 253 14.64 c.56.2.1 100706 1eqcA 394 15.29 c.1.8.3 28811 2q62A 247 16.68 1e3jA 352 16.87 b.35.1.2,c.2.1.1 24765,29781 1db3A 372 17.38 c.2.1.2 29813 1gu7A 364 18.06 b.35.1.2,c.2.1.1 83321,83322 2dri 271 18.70 2rkqA 169 18.86 2liv 344 19.37 1uhvA 500 19.81 b.71.1.2,c.1.8.3 99402,99403 2a3nA 355 20.52 2i2wA 212 20.65 2hpvA 208 21.81 1k6xA 352 22.17 c.2.1.2 68238 1yt8A 539 22.41 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1fh9A 312 22.42 c.1.8.3 28913 1tk9A 188 22.76 c.80.1.3 107082 2v3gA 283 23.31 1xyzA 347 24.58 c.1.8.3 28804 1rxyA 253 25.72 c.56.2.1 98065 1wb0A 445 26.88 c.1.8.5,d.26.3.1 120825,120826 2f6kA 307 27.82 c.1.9.15 133047 1yb0A 159 27.98 d.118.1.1 122865 1usgA 346 28.17 c.93.1.1 99864 1h1nA 305 30.57 c.1.8.3 70855 1z15A 344 30.76 1ve1A 304 30.85 c.79.1.1 120007 1lfaA 187 33.07 c.62.1.1 34122 1owqA 361 33.59 c.1.8.5,d.26.3.1 104041,104042 3ctpA 330 33.69 1hzdA 272 34.35 c.14.1.3 65969 1bdbA 277 35.07 c.2.1.2 29874 1c93A 265 37.47 c.1.8.5 28998 1mjnA 179 39.32 c.62.1.1 79210 3cs3A 277 39.77 2pqmA 343 40.02 1hdoA 206 40.42 c.2.1.2 60965 1z7yA 322 40.77 c.79.1.1 124679 1e8cA 498 41.38 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1f89A 291 41.42 d.160.1.1 64988 1ceoA 343 41.80 c.1.8.3 28808 2nm0A 253 41.87 1j0aA 325 42.06 c.79.1.1 83871 2i7gA 376 42.65 2grjA 192 43.09 1x92A 199 43.43 c.80.1.3 114976 1vmkA 277 43.88 c.56.2.1 113680 1orrA 347 43.98 c.2.1.2 93460 2ohhA 404 44.47 1jx6A 342 45.32 c.93.1.1 67406 2ax4A 198 46.03 2dx6A 159 47.33 1fcjA 322 47.94 c.79.1.1 35289 1bqcA 302 48.38 c.1.8.3 28831 1es9A 232 48.53 c.23.10.3 31340 2q3bA 313 48.60 1ockA 412 49.45 c.117.1.1 86802 1v6tA 255 49.47 c.6.2.5 113550 8abp 306 50.96 1vf8A 377 51.32 c.1.8.5,d.26.3.1 120029,120030 3c8uA 208 52.69 1ivnA 190 53.70 c.23.10.5 83719 2eaxA 164 53.78 1pixA 587 54.09 c.14.1.4,c.14.1.4 118578,118579 1moqA 368 54.77 c.80.1.1 35302 1vjzA 341 55.14 c.1.8.3 100838 2depA 356 55.31 1szoA 257 55.81 c.14.1.3 106164 1o58A 303 56.83 c.79.1.1 92491 1o8uA 257 56.97 c.14.1.3 81194 1ctn 540 57.30 1vbuA 328 57.76 c.1.8.3 119963 1h4pA 408 58.11 c.1.8.3 90617 1ve5A 311 58.33 c.79.1.1 120013 1gewA 356 59.00 c.67.1.1 60470 1tjyA 316 59.18 c.93.1.1 107062 1z7wA 322 60.10 c.79.1.1 124674 1xpkC 388 60.55 c.95.1.2,c.95.1.2 115747,115748 1fobA 334 60.60 c.1.8.3 83255 2yvaA 196 60.98 2c2nA 339 62.77 2e87A 357 62.80 1w85A 368 62.80 c.36.1.11 114335 1e9lA 377 62.83 c.1.8.5,d.26.3.1 59395,59396 1kewA 361 63.47 c.2.1.2 68544 1rwtA 232 64.81 f.43.1.1 97992 1f0kA 364 65.20 c.87.1.2 35465 2c0hA 353 65.40 c.1.8.3 129594 2z2uA 311 65.76 1ajsA 412 65.96 c.67.1.1 34276 1qh8A 478 65.98 c.92.2.3 35633 1ohtA 215 66.62 d.118.1.1 87036 1vp8A 201 68.16 c.49.1.2 113947 2osxA 481 68.86 2citA 282 70.61 c.1.8.3 130499 7a3hA 303 71.18 c.1.8.3 28817 2cuyA 305 72.47 1pjhA 280 72.88 c.14.1.3 94761 2f9iB 285 73.75 1uf3A 228 74.08 d.159.1.6 99317 2dvtA 327 75.14 c.1.9.15 131793 2ghcX 261 75.18 1bg4A 302 75.97 c.1.8.3 28806 2df8A 325 78.39 1w6uA 302 79.73 c.2.1.2 114288 2o55A 258 79.86 1k2wA 256 80.87 c.2.1.2 90927 1xm7A 195 81.36 d.159.1.8 115473 2hx1A 284 81.50 2dtxA 264 81.60 1js3A 486 83.08 c.67.1.6 67215 1uwvA 433 83.40 b.40.4.12,c.66.1.40 100128,100129 1qrrA 394 83.68 c.2.1.2 29824 1g60A 260 86.18 c.66.1.11 70151 1j5xA 342 86.34 c.80.1.1 71591 1ox0A 430 88.04 c.95.1.1,c.95.1.1 87495,87496 2bmaA 470 88.22 2bgxA 261 88.98 a.20.1.1,d.118.1.1 128504,128505 1v0lA 313 89.46 c.1.8.3 108207