# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 2.96e-19 2z3zA 706 1.39e-18 2hu5A 582 7.24e-18 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 3.54e-17 b.70.3.1,c.69.1.24 87354,87355 2qm0A 275 1.35e-16 1xfdA 723 2.13e-16 b.70.3.1,c.69.1.24 115251,115252 1qfmA 710 2.55e-16 b.69.7.1,c.69.1.4 27673,34641 1h2wA 710 4.60e-16 b.69.7.1,c.69.1.4 76596,76597 2uz0A 263 5.44e-16 1o6gA 710 5.89e-16 b.69.7.1,c.69.1.4 81087,81088 2gzsA 278 1.54e-15 3c8dA 403 2.04e-15 2b20A 403 2.18e-15 b.1.18.20,c.69.1.2 127685,127686 1l7aA 318 3.15e-15 c.69.1.25 77772 1wb4A 297 4.83e-15 c.69.1.2 120827 2r8bA 251 7.34e-15 1pv1A 299 7.53e-15 c.69.1.34 111639 1vlqA 337 7.78e-15 c.69.1.25 108848 2jbwA 386 9.86e-15 3b5eA 223 1.45e-14 2bklA 695 1.45e-14 1f0nA 285 1.81e-14 c.69.1.3 34636 2i3dA 249 1.93e-14 1zi8A 236 2.53e-14 1yr2A 741 3.10e-14 1lzlA 323 6.08e-14 c.69.1.2 78306 1din 236 6.60e-14 1jjfA 268 7.35e-14 c.69.1.2 66765 2o2gA 223 8.57e-14 1fj2A 232 1.23e-13 c.69.1.14 34720 1auoA 218 1.49e-13 c.69.1.14 34716 1ycdA 243 1.56e-13 1ufoA 238 2.31e-13 c.69.1.27 99344 1jfrA 262 3.71e-13 c.69.1.16 34724 1u4nA 310 4.22e-13 c.69.1.2 113021 2fx5A 258 4.82e-13 1jjiA 311 5.36e-13 c.69.1.2 66766 2fukA 220 5.74e-13 1qe3A 489 1.52e-12 c.69.1.1 34630 1r88A 280 1.74e-12 c.69.1.3 97219 1dqzA 280 2.21e-12 c.69.1.3 34638 1vkhA 273 3.13e-12 c.69.1.32 108662 1p0iA 529 3.17e-12 c.69.1.1 93867 3bxpA 277 3.64e-12 2pblA 262 6.04e-12 1mpxA 615 1.49e-11 b.18.1.13,c.69.1.21 85041,85042 2hdwA 367 1.97e-11 1ea5A 537 2.65e-11 c.69.1.1 34592 1thg 544 4.40e-11 1llfA 534 4.61e-11 c.69.1.17 78094 1cleA 534 5.29e-11 c.69.1.17 34771 1ukcA 522 5.86e-11 c.69.1.17 107911 1imjA 210 1.10e-10 c.69.1.23 71246 1ju3A 583 1.13e-10 b.18.1.13,c.69.1.21 67300,67301 2hm7A 310 3.17e-10 1q0rA 298 5.14e-10 c.69.1.28 95508 2o7rA 338 6.66e-10 1j1iA 296 6.93e-10 c.69.1.10 83977 1wm1A 317 8.95e-10 c.69.1.7 109405 1ede 310 1.20e-09 1jkmA 358 1.26e-09 c.69.1.2 34633 1b6g 310 1.64e-09 1c4xA 285 1.74e-09 c.69.1.10 34684 1qtrA 317 1.98e-09 c.69.1.7 34660 1mtzA 293 2.10e-09 c.69.1.7 79467 1u2eA 289 2.17e-09 2bce 581 2.28e-09 1k8qA 377 3.60e-09 c.69.1.6 72177 1azwA 313 5.24e-09 c.69.1.7 34658 1zd3A 555 5.39e-09 c.108.1.2,c.69.1.11 124930,124931 1uk8A 282 5.76e-09 c.69.1.10 107907 1tqhA 247 6.09e-09 c.69.1.29 107225 1hlgA 371 6.13e-09 c.69.1.6 34656 1a88A 275 6.77e-09 c.69.1.12 34707 3bdiA 207 6.90e-09 1va4A 279 7.17e-09 c.69.1.12 108458 1bn7A 294 7.17e-09 c.69.1.8 34677 1xqwA 293 7.40e-09 1yasA 257 1.01e-08 c.69.1.20 34801 1r1dA 247 1.17e-08 c.69.1.29 96813 1womA 271 1.24e-08 1ehyA 294 1.29e-08 c.69.1.11 34693 1brt 277 1.33e-08 3c5vA 316 1.53e-08 1m33A 258 1.57e-08 c.69.1.26 78514 2ocgA 254 1.71e-08 1tca 317 1.80e-08 1broA 277 2.06e-08 c.69.1.12 34700 1qj4A 257 2.20e-08 c.69.1.20 34796 2cjpA 328 2.46e-08 2b61A 377 2.63e-08 1xklA 273 3.45e-08 c.69.1.20 115410 1mnaA 298 4.16e-08 c.69.1.22 79322 2r11A 306 4.28e-08 1mj5A 302 4.63e-08 c.69.1.8 91285 3bwxA 285 5.16e-08 1hkhA 279 5.16e-08 c.69.1.12 90628 2qjwA 176 5.44e-08 1cv2A 296 6.12e-08 c.69.1.8 34680 1b6gA 310 8.35e-08 c.69.1.8 34661 1zoiA 276 9.63e-08 2h7cA 542 1.07e-07 c.69.1.1 136207 2e3jA 356 1.15e-07 2rhwA 283 1.15e-07 2og1A 286 1.31e-07 3bf7A 255 1.35e-07 2veoA 441 1.42e-07 2qmqA 286 1.82e-07 2qruA 274 1.83e-07 2pujA 286 1.85e-07 1r3dA 264 1.95e-07 c.69.1.35 111680 2yysA 286 1.99e-07 1qo7A 394 2.03e-07 c.69.1.11 34697 2puhA 286 2.13e-07 2psdA 318 2.37e-07 2ogtA 498 2.65e-07 1y37A 304 3.06e-07 1a8sA 273 3.18e-07 c.69.1.12 34710 2pl5A 366 3.37e-07 1gpl 432 3.47e-07 1bu8A 452 3.69e-07 b.12.1.2,c.69.1.19 23647,34795 1a8qA 274 4.05e-07 c.69.1.12 34702 3bdvA 191 4.14e-07 1ei9A 279 4.74e-07 c.69.1.13 34713 1uxoA 192 4.84e-07 c.69.1.31 108121 1tcaA 317 5.24e-07 c.69.1.17 34726 1jmkC 230 8.77e-07 c.69.1.22 71747 1lnsA 763 9.73e-07 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2qs9A 194 1.04e-06 2qvbA 297 1.16e-06 1brtA 277 1.27e-06 c.69.1.12 34699 2o2iA 300 1.29e-06 2rauA 354 1.30e-06 1ys1X 320 2.20e-06 2q0xA 335 2.53e-06 2cb9A 244 4.03e-06 1pjaA 302 4.64e-06 c.69.1.13 94758 1cvl 319 5.80e-06 2hfkA 319 7.07e-06 1thgA 544 1.29e-05 c.69.1.17 34763 2bceA 585 1.44e-05 c.69.1.1 34625 1cvlA 319 1.55e-05 c.69.1.18 34786 1hplA 449 1.68e-05 b.12.1.2,c.69.1.19 23639,34787 1qlwA 328 2.38e-05 c.69.1.15 34722 3bixA 574 2.54e-05 2d80A 318 2.82e-05 2d81A 318 7.30e-05 2px6A 316 0.000171 1ac5 483 0.000210 1ac5A 483 0.000231 c.69.1.5 34653 1ispA 181 0.000357 c.69.1.18 76778 1ivyA 452 0.000386 c.69.1.5 34654 1i6wA 181 0.000732 c.69.1.18 61859 1tibA 269 0.003590 c.69.1.17 34738 2z5gA 387 0.007746 3tglA 269 0.01014 c.69.1.17 34733 1thtA 305 0.01055 c.69.1.13 34711 1gt6A 269 0.01080 c.69.1.17 76342 1tib 269 0.01161 2bjhA 260 0.01320 1uwcA 261 0.02259 c.69.1.17 100101 1cexA 214 0.06398 c.69.1.30 31285 1cex 214 0.06771 2dsnA 387 0.1418 2oryA 346 0.2855 1g0cA 364 0.3751 c.1.8.3 60165 2czqA 205 0.4359 1ku0A 388 1.986 c.69.1.18 72994 1whtA 256 4.487 c.69.1.5 34646 1whsA 255 5.250 c.69.1.5 34649 1wb0A 445 5.363 c.1.8.5,d.26.3.1 120825,120826 2hjpA 290 5.854 1pswA 348 6.066 c.87.1.7 88287 2csuA 457 6.460 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2jepA 395 6.903 1vf8A 377 6.957 c.1.8.5,d.26.3.1 120029,120030 2cksA 306 7.685 1hjxA 362 8.539 c.1.8.5,d.26.3.1 83512,83513 1edg 380 9.397 1g66A 207 9.516 c.69.1.30 31329 1ll7A 392 10.18 c.1.8.5,d.26.3.1 78085,78086 1c93A 265 10.28 c.1.8.5 28998 1e9lA 377 10.32 c.1.8.5,d.26.3.1 59395,59396 1owqA 361 11.47 c.1.8.5,d.26.3.1 104041,104042 2pqmA 343 12.22 2q71A 356 13.37 1qnrA 344 14.77 c.1.8.3 28834 1eziA 228 15.91 c.68.1.13 34512 1hkkA 364 16.56 c.1.8.5,d.26.3.1 90634,90635 1yb0A 159 16.80 d.118.1.1 122865 2bfgA 503 18.40 b.71.1.2,c.1.8.3 128423,128424 2ax4A 198 19.93 1rh9A 373 20.49 c.1.8.3 118773 1v6tA 255 20.83 c.6.2.5 113550 1itxA 419 20.89 c.1.8.5,d.26.3.1 71425,71426 1z7yA 322 21.07 c.79.1.1 124679 2bv9A 290 22.27 c.1.8.3 129242 1fh9A 312 22.54 c.1.8.3 28913 1w9pA 433 22.71 c.1.8.5,d.26.3.1 114412,114413 1vflA 356 23.49 c.1.9.1 120041 3bq9A 460 23.53 1xyzA 347 23.82 c.1.8.3 28804 1d2kA 392 24.00 c.1.8.5,d.26.3.1 29008,38442 2qj8A 332 24.32 1uf3A 228 25.24 d.159.1.6 99317 1eceA 358 28.51 c.1.8.3 28813 1ceo 343 28.84 1e8cA 498 29.10 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1edtA 271 30.07 c.1.8.5 28993 1qgoA 264 30.28 c.92.1.2 35596 2dskA 311 30.70 3c8uA 208 31.18 2f6kA 307 32.72 c.1.9.15 133047 2pc8A 400 33.55 2jg2A 422 34.24 3co4A 312 34.53 2dri 271 34.54 1vmeA 410 34.62 c.23.5.1,d.157.1.3 108893,108894 1z7wA 322 34.62 c.79.1.1 124674 2c0hA 353 35.69 c.1.8.3 129594 2df8A 325 36.11 1ad4A 266 36.60 c.1.21.1 29670 2gwgA 350 37.28 c.1.9.15 135805 1m22A 503 37.42 c.117.1.1 78464 7a3hA 303 37.43 c.1.8.3 28817 1o58A 303 37.69 c.79.1.1 92491 2v3gA 283 37.71 1whsB 153 39.31 1whtB 153 39.42 2hx1A 284 39.59 1uroA 367 40.74 c.1.22.1 29675 2o14A 375 40.98 2pgd 482 40.98 2qahA 303 41.76 3clwA 507 42.88 2ebnA 289 44.26 c.1.8.5 28990 1v2dA 381 44.57 c.67.1.1 108281 1wy0A 342 45.42 2btoA 473 46.72 2c2nA 339 47.71 1lamA 484 47.89 c.50.1.1,c.56.5.3 33166,33829 2rkqA 169 48.37 1tvnA 293 48.48 c.1.8.3 119360 1wz8A 264 49.43 c.14.1.3 121483 1a0dA 440 49.67 c.1.15.3 29533 2vapA 364 50.00 1lam 484 50.15 1w1iE 357 50.32 c.1.9.1 109051 2dfaA 250 50.75 c.6.2.5 131469 1bfd 528 55.44 1uuqA 440 56.24 c.1.8.3 100015 1pjhA 280 57.23 c.14.1.3 94761 2liv 344 59.52 1ydnA 295 60.10 3bptA 363 60.72 3ctpA 330 61.29 2pmbA 462 61.32 1fsz 372 61.39 1oi7A 288 61.86 c.2.1.8,c.23.4.1 87049,87050 1pwhA 327 62.09 c.79.1.1 95224 2ozlB 341 63.12 c.36.1.7,c.48.1.2 139447,139448 2f9iA 327 64.12 2h00A 254 64.54 c.66.1.54 135925 1n82A 331 66.21 c.1.8.3 91703 2pi6A 361 66.81 1d3vA 323 69.25 c.42.1.1 32559 1bjwA 382 69.34 c.67.1.1 34349 2rc5A 314 69.61 1eu8A 409 69.73 c.94.1.1 59502 1rxyA 253 70.64 c.56.2.1 98065 2ob3A 330 71.00 2z8fA 412 71.60 1j97A 211 71.95 c.108.1.4 62753 1jndA 420 72.66 c.1.8.5,d.26.3.1 71757,71758 1yw4A 341 73.26 c.56.5.7 124131 1gudA 288 73.86 c.93.1.1 83326 1x19A 359 74.08 1ofuA 320 75.27 c.32.1.1,d.79.2.1 86972,86973 3bf0A 593 76.76 2q09A 416 78.46 2b4gA 317 79.71 c.1.4.1 127829 2nvoA 535 79.83 1eqcA 394 80.10 c.1.8.3 28811 1wkyA 464 80.12 b.18.1.31,c.1.8.3 120992,120993 1ars 396 80.28 1v0lA 313 81.45 c.1.8.3 108207 1shuX 182 81.67 c.62.1.1 98882 1tzjA 338 82.44 c.79.1.1 112868 2gt1A 326 83.08 1z15A 344 83.72 3c3jA 384 85.51 2ip2A 334 85.85 1tk9A 188 85.91 c.80.1.3 107082 2r8wA 332 85.94 1yt8A 539 85.96 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1t2dA 322 86.54 c.2.1.5,d.162.1.1 99084,99085 2v9dA 343 86.70 2cuyA 305 87.43 1ajsA 412 88.83 c.67.1.1 34276 2uuuA 584 89.05 2fbmA 291 89.63 c.14.1.3 133251 1zsxA 347 89.63