# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 2.30e-19 2z3zA 706 1.22e-18 2hu5A 582 2.54e-18 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 2.58e-17 b.70.3.1,c.69.1.24 87354,87355 1qfmA 710 2.84e-17 b.69.7.1,c.69.1.4 27673,34641 1xfdA 723 3.45e-17 b.70.3.1,c.69.1.24 115251,115252 1h2wA 710 5.53e-17 b.69.7.1,c.69.1.4 76596,76597 1o6gA 710 8.17e-17 b.69.7.1,c.69.1.4 81087,81088 2qm0A 275 8.55e-17 3c8dA 403 2.54e-16 2uz0A 263 2.67e-16 2bklA 695 5.76e-16 1yr2A 741 1.42e-15 2b20A 403 1.54e-15 b.1.18.20,c.69.1.2 127685,127686 1l7aA 318 2.11e-15 c.69.1.25 77772 1wb4A 297 2.12e-15 c.69.1.2 120827 2gzsA 278 2.40e-15 2jbwA 386 3.27e-15 1vlqA 337 4.81e-15 c.69.1.25 108848 2r8bA 251 6.31e-15 3b5eA 223 1.54e-14 1pv1A 299 1.70e-14 c.69.1.34 111639 1f0nA 285 1.96e-14 c.69.1.3 34636 2i3dA 249 2.92e-14 1zi8A 236 2.94e-14 1lzlA 323 5.59e-14 c.69.1.2 78306 1jjfA 268 6.11e-14 c.69.1.2 66765 1din 236 6.63e-14 2o2gA 223 7.30e-14 1ycdA 243 1.14e-13 1fj2A 232 1.95e-13 c.69.1.14 34720 1jfrA 262 2.41e-13 c.69.1.16 34724 1auoA 218 3.43e-13 c.69.1.14 34716 2fx5A 258 5.91e-13 2fukA 220 7.29e-13 1r88A 280 7.49e-13 c.69.1.3 97219 1u4nA 310 7.97e-13 c.69.1.2 113021 1p0iA 529 8.73e-13 c.69.1.1 93867 1ufoA 238 9.70e-13 c.69.1.27 99344 1dqzA 280 1.29e-12 c.69.1.3 34638 1thg 544 1.30e-12 1qe3A 489 2.05e-12 c.69.1.1 34630 1jjiA 311 2.47e-12 c.69.1.2 66766 1ea5A 537 2.72e-12 c.69.1.1 34592 3bxpA 277 3.85e-12 1vkhA 273 4.19e-12 c.69.1.32 108662 1mpxA 615 5.48e-12 b.18.1.13,c.69.1.21 85041,85042 2hdwA 367 5.97e-12 1cleA 534 8.70e-12 c.69.1.17 34771 1llfA 534 8.99e-12 c.69.1.17 78094 2pblA 262 1.71e-11 1ukcA 522 2.53e-11 c.69.1.17 107911 2bce 581 1.49e-10 1ju3A 583 1.62e-10 b.18.1.13,c.69.1.21 67300,67301 2hm7A 310 2.63e-10 1wm1A 317 3.83e-10 c.69.1.7 109405 1imjA 210 4.55e-10 c.69.1.23 71246 1jkmA 358 7.05e-10 c.69.1.2 34633 1q0rA 298 7.19e-10 c.69.1.28 95508 1j1iA 296 8.80e-10 c.69.1.10 83977 1k8qA 377 1.26e-09 c.69.1.6 72177 1u2eA 289 1.55e-09 1ede 310 1.63e-09 1qtrA 317 1.65e-09 c.69.1.7 34660 2o7rA 338 1.68e-09 1mtzA 293 1.68e-09 c.69.1.7 79467 1uk8A 282 1.72e-09 c.69.1.10 107907 1c4xA 285 1.79e-09 c.69.1.10 34684 1b6g 310 1.85e-09 1hlgA 371 2.11e-09 c.69.1.6 34656 1azwA 313 3.07e-09 c.69.1.7 34658 1zd3A 555 3.40e-09 c.108.1.2,c.69.1.11 124930,124931 1va4A 279 4.24e-09 c.69.1.12 108458 1bn7A 294 4.24e-09 c.69.1.8 34677 1a88A 275 5.80e-09 c.69.1.12 34707 1tqhA 247 6.42e-09 c.69.1.29 107225 1brt 277 6.66e-09 1r1dA 247 7.21e-09 c.69.1.29 96813 1xqwA 293 8.17e-09 1lnsA 763 8.53e-09 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2ocgA 254 9.12e-09 1broA 277 9.39e-09 c.69.1.12 34700 1m33A 258 1.09e-08 c.69.1.26 78514 1ehyA 294 1.09e-08 c.69.1.11 34693 3bdiA 207 1.14e-08 2h7cA 542 1.40e-08 c.69.1.1 136207 2cjpA 328 1.70e-08 1womA 271 1.74e-08 2veoA 441 1.86e-08 3c5vA 316 1.91e-08 2r11A 306 1.94e-08 1yasA 257 2.04e-08 c.69.1.20 34801 1hkhA 279 2.37e-08 c.69.1.12 90628 1cv2A 296 2.75e-08 c.69.1.8 34680 2b61A 377 3.00e-08 1mj5A 302 3.10e-08 c.69.1.8 91285 1zoiA 276 3.85e-08 1qj4A 257 4.29e-08 c.69.1.20 34796 2rhwA 283 5.22e-08 2qjwA 176 5.38e-08 1xklA 273 6.18e-08 c.69.1.20 115410 2e3jA 356 7.00e-08 2og1A 286 8.45e-08 1b6gA 310 8.58e-08 c.69.1.8 34661 3bwxA 285 8.75e-08 2pujA 286 8.99e-08 1tca 317 1.02e-07 2puhA 286 1.06e-07 2yysA 286 1.09e-07 2qmqA 286 1.20e-07 1mnaA 298 1.33e-07 c.69.1.22 79322 1a8sA 273 1.33e-07 c.69.1.12 34710 2psdA 318 1.56e-07 2ogtA 498 1.69e-07 1brtA 277 1.98e-07 c.69.1.12 34699 3bf7A 255 2.12e-07 1r3dA 264 2.31e-07 c.69.1.35 111680 1uxoA 192 2.35e-07 c.69.1.31 108121 2qruA 274 2.38e-07 1a8qA 274 2.73e-07 c.69.1.12 34702 1y37A 304 3.12e-07 1qo7A 394 3.97e-07 c.69.1.11 34697 2o2iA 300 4.43e-07 1tcaA 317 4.95e-07 c.69.1.17 34726 2pl5A 366 5.31e-07 2qvbA 297 5.37e-07 1ei9A 279 6.68e-07 c.69.1.13 34713 2qs9A 194 1.12e-06 1bu8A 452 1.39e-06 b.12.1.2,c.69.1.19 23647,34795 2rauA 354 1.44e-06 3bdvA 191 1.70e-06 1pjaA 302 2.35e-06 c.69.1.13 94758 1gpl 432 3.00e-06 1jmkC 230 3.16e-06 c.69.1.22 71747 1qlwA 328 3.83e-06 c.69.1.15 34722 2bceA 585 4.28e-06 c.69.1.1 34625 1thgA 544 4.70e-06 c.69.1.17 34763 1ys1X 320 4.78e-06 1cvl 319 4.82e-06 1cvlA 319 5.93e-06 c.69.1.18 34786 2cb9A 244 6.69e-06 3bixA 574 7.85e-06 2q0xA 335 1.66e-05 2hfkA 319 1.67e-05 2d80A 318 4.63e-05 1hplA 449 7.37e-05 b.12.1.2,c.69.1.19 23639,34787 2px6A 316 7.83e-05 2d81A 318 0.000193 1ac5 483 0.000297 1ivyA 452 0.000450 c.69.1.5 34654 1ac5A 483 0.000521 c.69.1.5 34653 1ispA 181 0.000934 c.69.1.18 76778 1i6wA 181 0.001637 c.69.1.18 61859 1tibA 269 0.002989 c.69.1.17 34738 1tib 269 0.006280 2bjhA 260 0.009747 1gt6A 269 0.01087 c.69.1.17 76342 3tglA 269 0.01926 c.69.1.17 34733 1uwcA 261 0.02014 c.69.1.17 100101 1thtA 305 0.02894 c.69.1.13 34711 1cex 214 0.03375 1cexA 214 0.03485 c.69.1.30 31285 2z5gA 387 0.03783 2oryA 346 0.1531 2czqA 205 0.8140 2dsnA 387 0.8409 1whsA 255 1.763 c.69.1.5 34649 2csuA 457 1.929 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2bfgA 503 2.221 b.71.1.2,c.1.8.3 128423,128424 1whtA 256 2.480 c.69.1.5 34646 1g0cA 364 3.081 c.1.8.3 60165 2cksA 306 5.030 1ku0A 388 6.904 c.69.1.18 72994 1ll7A 392 7.083 c.1.8.5,d.26.3.1 78085,78086 1wb0A 445 7.139 c.1.8.5,d.26.3.1 120825,120826 1d2kA 392 7.413 c.1.8.5,d.26.3.1 29008,38442 1edg 380 7.838 2bv9A 290 7.888 c.1.8.3 129242 1whtB 153 8.930 1whsB 153 9.229 3c3jA 384 10.63 2b0mA 393 11.87 c.1.4.1 127644 1uf3A 228 13.35 d.159.1.6 99317 1hjxA 362 14.56 c.1.8.5,d.26.3.1 83512,83513 1w9pA 433 14.79 c.1.8.5,d.26.3.1 114412,114413 2dvtA 327 15.60 c.1.9.15 131793 1e8cA 498 16.33 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1vf8A 377 16.37 c.1.8.5,d.26.3.1 120029,120030 1eceA 358 18.40 c.1.8.3 28813 1j0aA 325 18.79 c.79.1.1 83871 1g66A 207 18.87 c.69.1.30 31329 2c0hA 353 19.09 c.1.8.3 129594 2pc8A 400 19.11 1hkkA 364 19.16 c.1.8.5,d.26.3.1 90634,90635 2v3gA 283 19.35 1e9lA 377 19.83 c.1.8.5,d.26.3.1 59395,59396 2f6kA 307 20.31 c.1.9.15 133047 1ceoA 343 20.36 c.1.8.3 28808 1itxA 419 20.59 c.1.8.5,d.26.3.1 71425,71426 1vflA 356 21.08 c.1.9.1 120041 1oi7A 288 21.55 c.2.1.8,c.23.4.1 87049,87050 1yb0A 159 21.71 d.118.1.1 122865 1w1iE 357 22.73 c.1.9.1 109051 1xyzA 347 23.64 c.1.8.3 28804 2q71A 356 24.06 1fh9A 312 24.41 c.1.8.3 28913 1vmeA 410 24.99 c.23.5.1,d.157.1.3 108893,108894 2jepA 395 25.49 1owqA 361 25.54 c.1.8.5,d.26.3.1 104041,104042 2q4zA 312 25.82 7a3hA 303 28.39 c.1.8.3 28817 2pqmA 343 28.58 1eudA 311 29.58 c.2.1.8,c.23.4.1 30312,31140 1lamA 484 29.68 c.50.1.1,c.56.5.3 33166,33829 1z7yA 322 30.12 c.79.1.1 124679 1qgoA 264 30.55 c.92.1.2 35596 1qe5A 266 31.11 c.56.2.1 33784 1m22A 503 31.28 c.117.1.1 78464 1ceo 343 32.54 2hx1A 284 34.27 1gytA 503 34.90 c.50.1.1,c.56.5.3 70765,70766 2ax4A 198 35.78 1fcjA 322 35.80 c.79.1.1 35289 2liv 344 36.25 1k6xA 352 37.14 c.2.1.2 68238 1wkyA 464 37.20 b.18.1.31,c.1.8.3 120992,120993 1p5jA 372 37.43 c.79.1.1 104067 1edqA 540 42.16 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1e3jA 352 42.96 b.35.1.2,c.2.1.1 24765,29781 1uroA 367 44.27 c.1.22.1 29675 1c93A 265 45.44 c.1.8.5 28998 1kfwA 435 45.45 c.1.8.5,d.26.3.1 77376,77377 2ozlA 365 45.63 2df8A 325 45.83 2q09A 416 46.17 1v71A 323 46.37 c.79.1.1 119859 2a22A 215 46.57 d.159.1.7 126025 3clwA 507 46.98 1pwhA 327 47.90 c.79.1.1 95224 1uuqA 440 48.85 c.1.8.3 100015 1tvnA 293 48.86 c.1.8.3 119360 1z7wA 322 49.49 c.79.1.1 124674 1pswA 348 51.17 c.87.1.7 88287 2rkqA 169 51.83 1ctn 540 52.12 1lam 484 52.50 2r8wA 332 52.58 2jg2A 422 54.41 1bg4A 302 54.70 c.1.8.3 28806 1n82A 331 55.32 c.1.8.3 91703 2v03A 303 55.93 1oheA 348 56.98 c.45.1.1,c.45.1.1 87013,87014 3ctpA 330 57.25 1to6A 371 57.29 c.141.1.1 107170 1wohA 305 57.54 c.42.1.1 109446 1o58A 303 57.62 c.79.1.1 92491 2hjpA 290 57.93 1ad4A 266 58.65 c.1.21.1 29670 1ydnA 295 59.00 1yn9A 169 59.36 2qahA 303 59.89 1vbuA 328 60.78 c.1.8.3 119963 1ve1A 304 61.17 c.79.1.1 120007 1bu6O 501 61.60 c.55.1.4,c.55.1.4 33499,33500 2gtrA 261 61.71 2gwgA 350 62.05 c.1.9.15 135805 1jndA 420 62.24 c.1.8.5,d.26.3.1 71757,71758 1h4pA 408 63.12 c.1.8.3 90617 1nzyA 269 63.94 c.14.1.3 30903 2a3nA 355 64.53 1moqA 368 65.32 c.80.1.1 35302 1qnrA 344 65.69 c.1.8.3 28834 2gt1A 326 66.02 1scuA 288 66.47 c.2.1.8,c.23.4.1 30307,31135 1rh9A 373 67.53 c.1.8.3 118773 2ob3A 330 67.76 1ve5A 311 68.00 c.79.1.1 120013 1bdbA 277 68.36 c.2.1.2 29874 1d3gA 367 68.98 c.1.4.1 28600 1kpgA 287 69.75 c.66.1.18 68735 2fg1A 158 70.28 c.50.1.2 133400 2fbmA 291 70.75 c.14.1.3 133251 2trcP 217 71.93 c.47.1.6 33051 2amxA 376 72.08 c.1.9.1 127024 1qopB 396 72.29 c.79.1.1 35270 2r98A 456 73.00 1v7cA 351 74.89 c.79.1.1 100446 2btoA 473 75.01 2uz1A 563 75.42 1hzdA 272 75.66 c.14.1.3 65969 1xm7A 195 75.70 d.159.1.8 115473 1ybtA 184 76.73 1ituA 369 79.08 c.1.9.7 71423 3cs3A 277 82.73 3b9eA 584 84.21 1p0kA 349 84.22 c.1.4.1 87648 2zatA 260 84.94 2yv1A 294 85.03 3co4A 312 85.50 3cvjA 243 87.26 2iucA 375 87.44 2pocA 367 88.18 3b9qA 302 88.58 1wc3A 219 89.01 d.58.29.1 114495 1w0mA 226 89.26 c.1.1.1 109027