# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2d5lA 706 0.000365 2z3zA 706 0.000368 2hu5A 582 0.000635 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 0.000656 b.70.3.1,c.69.1.24 87354,87355 2jbwA 386 0.003097 1o6gA 710 0.003138 b.69.7.1,c.69.1.4 81087,81088 2bklA 695 0.003408 1yr2A 741 0.003482 1l7aA 318 0.003590 c.69.1.25 77772 1xfdA 723 0.003603 b.70.3.1,c.69.1.24 115251,115252 1h2wA 710 0.004047 b.69.7.1,c.69.1.4 76596,76597 2i3dA 249 0.004450 1qfmA 710 0.004602 b.69.7.1,c.69.1.4 27673,34641 2uz0A 263 0.004828 1vlqA 337 0.005148 c.69.1.25 108848 1jjfA 268 0.006073 c.69.1.2 66765 2qm0A 275 0.006559 3b5eA 223 0.007110 2o2gA 223 0.008042 2gzsA 278 0.008616 1dqzA 280 0.008760 c.69.1.3 34638 3c8dA 403 0.009376 1din 236 0.009684 1f0nA 285 0.009780 c.69.1.3 34636 1r88A 280 0.01127 c.69.1.3 97219 1zi8A 236 0.01170 2r8bA 251 0.01173 1auoA 218 0.01499 c.69.1.14 34716 1pv1A 299 0.01602 c.69.1.34 111639 2b20A 403 0.01611 b.1.18.20,c.69.1.2 127685,127686 3bxpA 277 0.01651 1lzlA 323 0.01743 c.69.1.2 78306 1jfrA 262 0.01779 c.69.1.16 34724 2hdwA 367 0.01862 1u4nA 310 0.02042 c.69.1.2 113021 1jjiA 311 0.02201 c.69.1.2 66766 1fj2A 232 0.02219 c.69.1.14 34720 1jkmA 358 0.03023 c.69.1.2 34633 1q0rA 298 0.03040 c.69.1.28 95508 2fukA 220 0.03148 1a88A 275 0.03669 c.69.1.12 34707 2o7rA 338 0.04009 2hm7A 310 0.04049 3bdiA 207 0.04196 1hlgA 371 0.04398 c.69.1.6 34656 1uk8A 282 0.04475 c.69.1.10 107907 1mpxA 615 0.04591 b.18.1.13,c.69.1.21 85041,85042 2fx5A 258 0.04776 1ufoA 238 0.04993 c.69.1.27 99344 1va4A 279 0.05150 c.69.1.12 108458 1c4xA 285 0.05343 c.69.1.10 34684 2r11A 306 0.05922 1u2eA 289 0.05956 1j1iA 296 0.06208 c.69.1.10 83977 2ocgA 254 0.06343 1a8qA 274 0.06347 c.69.1.12 34702 1a8sA 273 0.06408 c.69.1.12 34710 1vkhA 273 0.06772 c.69.1.32 108662 2rhwA 283 0.06876 1hkhA 279 0.06885 c.69.1.12 90628 1broA 277 0.07022 c.69.1.12 34700 1wm1A 317 0.07036 c.69.1.7 109405 1zoiA 276 0.07056 1qtrA 317 0.07197 c.69.1.7 34660 1ju3A 583 0.07304 b.18.1.13,c.69.1.21 67300,67301 2og1A 286 0.07473 2pujA 286 0.07592 1brt 277 0.08610 2puhA 286 0.08826 1ehyA 294 0.09211 c.69.1.11 34693 1mtzA 293 0.09216 c.69.1.7 79467 1imjA 210 0.09498 c.69.1.23 71246 1ycdA 243 0.09732 3bwxA 285 0.09809 2e3jA 356 0.0997 1ede 310 0.1006 1zd3A 555 0.1006 c.108.1.2,c.69.1.11 124930,124931 1b6g 310 0.1006 1k8qA 377 0.1009 c.69.1.6 72177 2yysA 286 0.1032 1wb4A 297 0.1046 c.69.1.2 120827 2pblA 262 0.1068 1bn7A 294 0.1110 c.69.1.8 34677 2cjpA 328 0.1177 1azwA 313 0.1304 c.69.1.7 34658 1qe3A 489 0.1359 c.69.1.1 34630 1brtA 277 0.1487 c.69.1.12 34699 2qmqA 286 0.1489 1y37A 304 0.1557 1xqwA 293 0.1575 1m33A 258 0.1635 c.69.1.26 78514 1ea5A 537 0.1637 c.69.1.1 34592 2b61A 377 0.1713 1xklA 273 0.1792 c.69.1.20 115410 1ukcA 522 0.1852 c.69.1.17 107911 1womA 271 0.1920 1mj5A 302 0.1946 c.69.1.8 91285 1b6gA 310 0.1960 c.69.1.8 34661 1p0iA 529 0.2175 c.69.1.1 93867 2o2iA 300 0.2283 1cv2A 296 0.2321 c.69.1.8 34680 3bf7A 255 0.2360 1qo7A 394 0.2415 c.69.1.11 34697 1tqhA 247 0.2442 c.69.1.29 107225 2qvbA 297 0.2572 2psdA 318 0.2645 1thg 544 0.2801 2h7cA 542 0.3088 c.69.1.1 136207 1r1dA 247 0.3115 c.69.1.29 96813 1cleA 534 0.3839 c.69.1.17 34771 1yasA 257 0.3842 c.69.1.20 34801 1llfA 534 0.3950 c.69.1.17 78094 3c5vA 316 0.3999 2veoA 441 0.4245 1uxoA 192 0.4250 c.69.1.31 108121 1r3dA 264 0.4282 c.69.1.35 111680 3bixA 574 0.4517 2qjwA 176 0.4684 2q0xA 335 0.4852 1qj4A 257 0.5116 c.69.1.20 34796 2pl5A 366 0.5214 2bce 581 0.6568 1ac5 483 0.7208 1ei9A 279 0.7993 c.69.1.13 34713 2qruA 274 0.8032 1tca 317 0.8119 2qs9A 194 0.8271 1qlwA 328 0.8587 c.69.1.15 34722 1ac5A 483 0.9144 c.69.1.5 34653 3bdvA 191 0.9224 1ivyA 452 0.9462 c.69.1.5 34654 2rauA 354 0.9511 1thgA 544 0.9754 c.69.1.17 34763 2bceA 585 0.9885 c.69.1.1 34625 2ogtA 498 1.168 1tcaA 317 1.254 c.69.1.17 34726 1thtA 305 1.635 c.69.1.13 34711 1lnsA 763 2.094 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ys1X 320 2.096 2cb9A 244 2.214 1cvl 319 2.217 1cvlA 319 2.570 c.69.1.18 34786 1pjaA 302 2.765 c.69.1.13 94758 1jmkC 230 2.775 c.69.1.22 71747 1mnaA 298 2.806 c.69.1.22 79322 1i6wA 181 3.123 c.69.1.18 61859 1gpl 432 3.235 1ispA 181 3.370 c.69.1.18 76778 1cex 214 4.134 1bu8A 452 4.234 b.12.1.2,c.69.1.19 23647,34795 2hfkA 319 4.255 1hplA 449 4.702 b.12.1.2,c.69.1.19 23639,34787 1cexA 214 5.621 c.69.1.30 31285 2d80A 318 5.736 2d81A 318 8.096 1tibA 269 10.71 c.69.1.17 34738 2px6A 316 10.92 2czqA 205 12.29 1g66A 207 15.44 c.69.1.30 31329 3tglA 269 16.91 c.69.1.17 34733 1tib 269 18.00 1whsA 255 20.84 c.69.1.5 34649 1gt6A 269 23.98 c.69.1.17 76342 1whtA 256 26.42 c.69.1.5 34646 1uwcA 261 30.37 c.69.1.17 100101 1xjo 284 33.54 2z5gA 387 42.44 2dsnA 387 48.41 2bjhA 260 52.31 1gtmA 419 54.67 c.2.1.7,c.58.1.1 30223,33871 1usuA 260 54.69 d.14.1.8 99885 1qq9A 284 55.36 c.56.5.4 33841 1tkjA 284 57.11 c.56.5.4 119296 2oryA 346 58.46 1a9xA 1058 60.43 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1g0cA 364 64.05 c.1.8.3 60165 1txvB 440 64.27 b.1.15.1,c.62.1.1,g.16.2.1 112784,112785,112786 2bmaA 470 64.77 2o55A 258 64.84 1zy9A 564 66.03 b.30.5.11,c.1.8.13 125813,125814 1hwxA 501 68.67 c.2.1.7,c.58.1.1 30250,33898 1ku0A 388 71.71 c.69.1.18 72994 1dtdA 303 71.79 c.56.5.1 33823 1t2aA 375 73.91 c.2.1.2 99078 1yw4A 341 74.90 c.56.5.7 124131 2pk3A 321 77.09 1b26A 416 80.45 c.2.1.7,c.58.1.1 30232,33880 2pfkA 320 82.84 c.89.1.1 35577 2c5aA 379 82.87 c.2.1.2 129894 2yvdA 431 83.16 1hrdA 449 84.40 c.2.1.7,c.58.1.1 30219,33867 1bgvA 449 87.42 c.2.1.7,c.58.1.1 30217,33865 2pzmA 330 89.04