Best Alignments for T0413

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1orvA/T0413-1orvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1orvA/T0413-1orvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2160e-223.44e-109 b.70.3.1
c.69.1.24
2d5lA/T0413-2d5lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2d5lA/T0413-2d5lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.0545e-223.06e-116
2z3zA/T0413-2z3zA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2z3zA/T0413-2z3zA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3350e-213.76e-115
1pv1A/T0413-1pv1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pv1A/T0413-1pv1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5618e-198.51e-90 c.69.1.34
2hu5A/T0413-2hu5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hu5A/T0413-2hu5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0385e-199.00e-104 b.69.7.2
c.69.1.33
1jjfA/T0413-1jjfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jjfA/T0413-1jjfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1447e-164.41e-92 c.69.1.2
1fj2A/T0413-1fj2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fj2A/T0413-1fj2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.9110e-161.00e-80 1auoA c.69.1.14
2uz0A/T0413-2uz0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2uz0A/T0413-2uz0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.8860e-154.53e-85
1yr2A/T0413-1yr2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yr2A/T0413-1yr2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7575e-141.27e-78
1l7aA/T0413-1l7aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1l7aA/T0413-1l7aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8393e-141.20e-86 c.69.1.25

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001