# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 4.64e-10 c.69.1.27 99344 1jjfA 268 5.72e-10 c.69.1.2 66765 1fj2A 232 7.25e-10 c.69.1.14 34720 2i3dA 249 8.98e-10 2d5lA 706 1.81e-09 2o2gA 223 1.91e-09 1l7aA 318 2.82e-09 c.69.1.25 77772 1auoA 218 3.39e-09 c.69.1.14 34716 1imjA 210 4.41e-09 c.69.1.23 71246 3bdiA 207 4.43e-09 1jfrA 262 4.54e-09 c.69.1.16 34724 2hu5A 582 5.50e-09 b.69.7.2,c.69.1.33 136763,136764 2jbwA 386 6.76e-09 2z3zA 706 6.92e-09 1mtzA 293 7.78e-09 c.69.1.7 79467 1orvA 728 8.52e-09 b.70.3.1,c.69.1.24 87354,87355 2hm7A 310 9.69e-09 1u4nA 310 1.05e-08 c.69.1.2 113021 2h7cA 542 1.15e-08 c.69.1.1 136207 1lzlA 323 1.36e-08 c.69.1.2 78306 2r8bA 251 2.14e-08 2fukA 220 2.19e-08 1r88A 280 2.26e-08 c.69.1.3 97219 1u2eA 289 2.36e-08 1thgA 544 2.45e-08 c.69.1.17 34763 1pv1A 299 2.67e-08 c.69.1.34 111639 1c4xA 285 2.82e-08 c.69.1.10 34684 1zi8A 236 2.85e-08 1p0iA 529 3.01e-08 c.69.1.1 93867 2hdwA 367 3.19e-08 1qe3A 489 3.20e-08 c.69.1.1 34630 1c7iA 489 3.28e-08 c.69.1.1 34632 1gkkA 297 3.42e-08 c.69.1.2 65248 1ea5A 537 3.97e-08 c.69.1.1 34592 1f0nA 285 4.04e-08 c.69.1.3 34636 1womA 271 4.36e-08 1wb4A 297 4.83e-08 c.69.1.2 120827 1b6g 310 4.94e-08 1j1iA 296 5.06e-08 c.69.1.10 83977 1h2xA 710 5.22e-08 b.69.7.1,c.69.1.4 76598,76599 1c7jA 489 5.32e-08 c.69.1.1 34631 2ogtA 498 5.57e-08 3bixA 574 6.14e-08 1cr6B 554 7.58e-08 c.69.1.11,c.108.1.2 34688,43338 1jjiA 311 7.86e-08 c.69.1.2 66766 2qm0A 275 9.09e-08 1a88A 275 1.01e-07 c.69.1.12 34707 1aqlA 532 1.01e-07 c.69.1.1 34627 1o6gA 710 1.02e-07 b.69.7.1,c.69.1.4 81087,81088 2ocgA 254 1.02e-07 1vlqA 337 1.10e-07 c.69.1.25 108848 2pblA 262 1.14e-07 3bxpA 277 1.20e-07 1broA 277 1.25e-07 c.69.1.12 34700 1xfdA 723 1.31e-07 b.70.3.1,c.69.1.24 115251,115252 1b6gA 310 1.32e-07 c.69.1.8 34661 1qtrA 317 1.38e-07 c.69.1.7 34660 1ede 310 1.53e-07 1tqhA 247 1.54e-07 c.69.1.29 107225 1brt 277 1.74e-07 1azwA 313 1.94e-07 c.69.1.7 34658 1thg 544 2.00e-07 2uz0A 263 2.17e-07 1xqwA 293 2.24e-07 1zd3A 555 2.31e-07 c.108.1.2,c.69.1.11 124930,124931 1zoiA 276 2.34e-07 1dqyA 283 2.45e-07 c.69.1.3 34640 2bceA 585 2.49e-07 c.69.1.1 34625 1hkhA 279 2.67e-07 c.69.1.12 90628 1din 236 2.80e-07 1uk8A 282 2.88e-07 c.69.1.10 107907 1xklA 273 2.91e-07 c.69.1.20 115410 1dqzA 280 2.94e-07 c.69.1.3 34638 1va4A 279 3.28e-07 c.69.1.12 108458 2bklA 695 3.33e-07 3c5vA 316 3.62e-07 2b20A 403 3.67e-07 b.1.18.20,c.69.1.2 127685,127686 2qmqA 286 3.71e-07 1q0rA 298 3.98e-07 c.69.1.28 95508 1ggvA 232 4.08e-07 c.69.1.9 34683 1e8nA 710 4.14e-07 b.69.7.1,c.69.1.4 27675,34643 2og1A 286 4.15e-07 1bn7A 294 4.16e-07 c.69.1.8 34677 1cqwA 295 4.37e-07 c.69.1.8 34679 2o7rA 338 4.52e-07 2pujA 286 4.72e-07 1llfA 534 5.74e-07 c.69.1.17 78094 1a8uA 277 5.93e-07 c.69.1.12 34703 3b5eA 223 6.09e-07 1yasA 257 6.26e-07 c.69.1.20 34801 2puhA 286 6.49e-07 1r1dA 247 6.63e-07 c.69.1.29 96813 1h2wA 710 6.97e-07 b.69.7.1,c.69.1.4 76596,76597 1brtA 277 7.97e-07 c.69.1.12 34699 1bn6A 294 8.04e-07 c.69.1.8 34678 1ehyA 294 8.12e-07 c.69.1.11 34693 1cv2A 296 9.06e-07 c.69.1.8 34680 1a8sA 273 9.96e-07 c.69.1.12 34710 2rhwA 283 1.02e-06 1yr2A 741 1.02e-06 1m33A 258 1.18e-06 c.69.1.26 78514 1qj4A 257 1.19e-06 c.69.1.20 34796 2rauA 354 1.24e-06 3c8dA 403 1.45e-06 1wm1A 317 1.46e-06 c.69.1.7 109405 1dx4A 586 1.50e-06 c.69.1.1 34622 1jkmA 358 1.57e-06 c.69.1.2 34633 2e3jA 356 1.89e-06 1ukcA 522 1.98e-06 c.69.1.17 107911 2cjpA 328 2.03e-06 3bwxA 285 2.31e-06 2psdA 318 2.36e-06 2qjwA 176 2.54e-06 1cleA 534 2.58e-06 c.69.1.17 34771 1iz7A 295 2.60e-06 c.69.1.8 76982 3bf7A 255 2.64e-06 1y37A 304 2.85e-06 1r3dA 264 3.07e-06 c.69.1.35 111680 1mj5A 302 3.24e-06 c.69.1.8 91285 1a8qA 274 3.32e-06 c.69.1.12 34702 2bce 581 3.52e-06 2fx5A 258 3.93e-06 2yysA 286 5.17e-06 2o2iA 300 6.11e-06 2d80A 318 1.03e-05 1cvlA 319 1.04e-05 c.69.1.18 34786 2qvbA 297 1.18e-05 1qo7A 394 1.42e-05 c.69.1.11 34697 1ys1X 320 1.42e-05 1qfmA 710 1.71e-05 b.69.7.1,c.69.1.4 27673,34641 1ju3A 583 1.72e-05 b.18.1.13,c.69.1.21 67300,67301 2qruA 274 2.24e-05 1tahA 318 2.52e-05 c.69.1.18 34775 2d81A 318 3.02e-05 2pl5A 366 3.74e-05 1i6wA 181 4.00e-05 c.69.1.18 61859 1mpxA 615 4.19e-05 b.18.1.13,c.69.1.21 85041,85042 2gzsA 278 4.19e-05 3bdvA 191 5.14e-05 1vkhA 273 8.23e-05 c.69.1.32 108662 1k8qA 377 8.51e-05 c.69.1.6 72177 1cvl 319 9.52e-05 1ispA 181 0.000135 c.69.1.18 76778 1hlgA 371 0.000167 c.69.1.6 34656 1qlwA 328 0.000199 c.69.1.15 34722 1lnsA 763 0.000209 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2qs9A 194 0.000229 2b61A 377 0.000298 2veoA 441 0.000398 1thtA 305 0.000442 c.69.1.13 34711 1mnaA 298 0.000589 c.69.1.22 79322 1ycdA 243 0.000797 1mo2A 294 0.000867 c.69.1.22 79331 1tcaA 317 0.000981 c.69.1.17 34726 1gpl 432 0.001304 1bu8A 452 0.001421 b.12.1.2,c.69.1.19 23647,34795 1tca 317 0.003035 1kezA 300 0.003080 c.69.1.22 68546 1hplA 449 0.007150 b.12.1.2,c.69.1.19 23639,34787 1uxoA 192 0.01253 c.69.1.31 108121 2q0xA 335 0.01854 1pjaA 302 0.02533 c.69.1.13 94758 1tib 269 0.1144 1whsA 255 0.2718 c.69.1.5 34649 1ivyA 452 0.3640 c.69.1.5 34654 1bcsA 263 0.3745 c.69.1.5 34647 1whtA 256 0.3848 c.69.1.5 34646 1gt6A 269 0.4638 c.69.1.17 76342 1eiwA 111 0.5770 c.23.3.1 31130 1tibA 269 0.5894 c.69.1.17 34738 2hfkA 319 0.7618 1uswA 260 0.7738 c.69.1.17 99895 1ei9A 279 1.244 c.69.1.13 34713 1uwcA 261 1.268 c.69.1.17 100101 2bjhA 260 1.370 3tglA 269 1.507 c.69.1.17 34733 1ku0A 388 1.903 c.69.1.18 72994 1ac5A 483 2.112 c.69.1.5 34653 1ac5 483 2.291 1j8mF 297 2.906 a.24.13.1,c.37.1.10 62742,62743 2oryA 346 2.981 1lgyA 269 4.647 c.69.1.17 34758 2qvpA 275 5.378 2cb9A 244 5.661 1ic6A 279 5.867 c.41.1.1 62257 2dsnA 387 6.149 1o2dA 371 9.619 e.22.1.2 86591 2pgnA 589 10.33 2q7xA 326 14.97 1i52A 236 15.22 c.68.1.13 61767 3cdxA 354 18.98 2ez9A 603 19.42 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1ceoA 343 19.74 c.1.8.3 28808 2z5gA 387 19.86 1rz3A 201 20.90 c.37.1.6 98132 2b81A 323 21.09 2i7cA 283 24.05 3ckkA 235 24.46 1drwA 273 25.10 c.2.1.3,d.81.1.3 30057,39972 1p9lA 245 25.67 c.2.1.3,d.81.1.3 94393,94394 3c8uA 208 25.94 1e8cA 498 26.38 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1t9bA 677 26.70 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 2qm8A 337 27.24 2g1pA 278 27.76 1j3gA 187 30.98 d.118.1.1 77075 2d73A 738 32.28 2djiA 590 34.35 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2px6A 316 34.52 2bz1A 196 37.19 c.144.1.1 129532 3c6kA 381 37.37 2ctc 307 38.25 2yvuA 186 38.37 2o07A 304 38.48 c.66.1.17 138862 1kbjA 412 39.71 c.1.4.1 72280 1sq5A 308 40.73 c.37.1.6 105882 1ybhA 590 42.49 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1poxA 585 43.05 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2jejA 358 44.37 d.240.1.1,e.8.1.7 138284,138285 1uirA 314 47.80 c.66.1.17 99429 1qpbA 563 47.85 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1z5rA 306 48.24 c.56.5.1 124488 2fcrA 173 49.66 c.23.5.1 31151 2p5tB 253 50.16 2csuA 457 53.32 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1jmkC 230 54.66 c.69.1.22 71747 2qt1A 207 54.91 1pydA 556 55.54 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1lehA 364 55.56 c.2.1.7,c.58.1.1 30268,33916 1m7gA 211 57.45 c.37.1.4 78724 1ne7A 289 59.61 c.124.1.1 91833 1qnrA 344 61.54 c.1.8.3 28834 1cz1A 394 64.74 c.1.8.3 28839 1yixA 265 64.89 c.1.9.12 123371 1bunB 61 65.67 g.8.1.1 44552 1gs5A 258 65.79 c.73.1.2 70395 1bu6O 501 66.00 c.55.1.4,c.55.1.4 33499,33500 1b3bA 415 66.49 c.2.1.7,c.58.1.1 30244,33892 2nxoA 291 67.02 1fc4A 401 67.33 c.67.1.4 59760 1jakA 512 69.70 c.1.8.6,d.92.2.1 66472,66473 2o6lA 170 70.34 3b2yA 275 70.57 1ezwA 349 71.57 c.1.16.3 29558 2am1A 454 71.74 2dpmA 284 71.90 c.66.1.28 34246 2c31A 568 72.14 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2bmaA 470 72.59 1wviA 257 73.63 c.108.1.14 114915 1bavA 309 74.20 c.56.5.1 33806 1cex 214 74.64 1e32A 458 74.77 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1eceA 358 74.97 c.1.8.3 28813 2ax4A 198 75.79 1dptA 117 76.13 d.80.1.3 39862 1owqA 361 78.45 c.1.8.5,d.26.3.1 104041,104042 1m41A 380 78.81 c.1.16.4 78595 1eqcA 394 79.57 c.1.8.3 28811 2hx1A 284 79.58 1vjrA 271 79.68 c.108.1.14 100832 1f5sA 211 80.08 c.108.1.4 59656 2p6pA 384 80.68 1j7xA 302 81.84 c.14.1.2 66425 1hzdA 272 83.22 c.14.1.3 65969 1o08A 221 84.14 c.108.1.6 86525 1b26A 416 84.27 c.2.1.7,c.58.1.1 30232,33880 2ivfA 976 84.81 1vmaA 306 85.95 a.24.13.1,c.37.1.10 108887,108888 1to6A 371 86.35 c.141.1.1 107170 2bkxA 242 86.38 1fs5A 266 86.96 c.124.1.1 65044 1qw9A 502 88.14 b.71.1.2,c.1.8.3 96466,96467 1ag9A 175 89.98 c.23.5.1 31178