# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jjfA 268 5.97e-11 c.69.1.2 66765 1fj2A 232 6.74e-11 c.69.1.14 34720 1ufoA 238 7.18e-11 c.69.1.27 99344 2i3dA 249 1.81e-10 2d5lA 706 2.51e-10 2o2gA 223 2.94e-10 1l7aA 318 3.60e-10 c.69.1.25 77772 1auoA 218 4.43e-10 c.69.1.14 34716 2jbwA 386 5.50e-10 1jfrA 262 6.24e-10 c.69.1.16 34724 3bdiA 207 6.28e-10 1imjA 210 7.11e-10 c.69.1.23 71246 2hu5A 582 8.15e-10 b.69.7.2,c.69.1.33 136763,136764 2z3zA 706 1.11e-09 1mtzA 293 1.13e-09 c.69.1.7 79467 1r88A 280 1.46e-09 c.69.1.3 97219 1orvA 728 1.49e-09 b.70.3.1,c.69.1.24 87354,87355 1lzlA 323 1.57e-09 c.69.1.2 78306 2hm7A 310 2.33e-09 2h7cA 542 2.60e-09 c.69.1.1 136207 2fukA 220 2.60e-09 1thgA 544 2.90e-09 c.69.1.17 34763 1u4nA 310 2.91e-09 c.69.1.2 113021 1pv1A 299 3.70e-09 c.69.1.34 111639 2r8bA 251 4.11e-09 1f0nA 285 4.13e-09 c.69.1.3 34636 1c4xA 285 4.82e-09 c.69.1.10 34684 1womA 271 5.17e-09 2hdwA 367 5.41e-09 1zi8A 236 5.42e-09 1u2eA 289 5.53e-09 1p0iA 529 6.09e-09 c.69.1.1 93867 1qe3A 489 6.14e-09 c.69.1.1 34630 1gkkA 297 6.48e-09 c.69.1.2 65248 1j1iA 296 7.74e-09 c.69.1.10 83977 1wb4A 297 8.56e-09 c.69.1.2 120827 1c7iA 489 9.01e-09 c.69.1.1 34632 2ocgA 254 9.10e-09 2ogtA 498 1.03e-08 1c7jA 489 1.18e-08 c.69.1.1 34631 1b6g 310 1.48e-08 3bixA 574 1.57e-08 1ea5A 537 1.73e-08 c.69.1.1 34592 1jjiA 311 1.74e-08 c.69.1.2 66766 3bxpA 277 1.88e-08 1cr6B 554 1.97e-08 c.69.1.11,c.108.1.2 34688,43338 1h2xA 710 2.06e-08 b.69.7.1,c.69.1.4 76598,76599 2qm0A 275 2.06e-08 1a88A 275 2.21e-08 c.69.1.12 34707 2pblA 262 2.35e-08 1vlqA 337 2.87e-08 c.69.1.25 108848 1o6gA 710 2.90e-08 b.69.7.1,c.69.1.4 81087,81088 1broA 277 2.92e-08 c.69.1.12 34700 1thg 544 3.07e-08 1tqhA 247 3.25e-08 c.69.1.29 107225 1aqlA 532 3.32e-08 c.69.1.1 34627 1dqyA 283 3.36e-08 c.69.1.3 34640 2b20A 403 3.43e-08 b.1.18.20,c.69.1.2 127685,127686 2uz0A 263 3.65e-08 1brt 277 3.85e-08 1din 236 3.87e-08 1qtrA 317 3.99e-08 c.69.1.7 34660 1xfdA 723 4.01e-08 b.70.3.1,c.69.1.24 115251,115252 1dqzA 280 4.03e-08 c.69.1.3 34638 1azwA 313 4.36e-08 c.69.1.7 34658 1b6gA 310 4.41e-08 c.69.1.8 34661 1ede 310 4.45e-08 1hkhA 279 4.91e-08 c.69.1.12 90628 1xqwA 293 5.06e-08 1va4A 279 5.82e-08 c.69.1.12 108458 1zoiA 276 5.95e-08 1zd3A 555 6.05e-08 c.108.1.2,c.69.1.11 124930,124931 1xklA 273 6.24e-08 c.69.1.20 115410 1ggvA 232 6.73e-08 c.69.1.9 34683 2bklA 695 7.05e-08 1uk8A 282 7.08e-08 c.69.1.10 107907 2bceA 585 8.27e-08 c.69.1.1 34625 2og1A 286 8.83e-08 2qmqA 286 9.13e-08 1llfA 534 9.42e-08 c.69.1.17 78094 1q0rA 298 9.57e-08 c.69.1.28 95508 3b5eA 223 1.03e-07 1r1dA 247 1.11e-07 c.69.1.29 96813 3c5vA 316 1.12e-07 1cqwA 295 1.12e-07 c.69.1.8 34679 1bn7A 294 1.30e-07 c.69.1.8 34677 2pujA 286 1.34e-07 1cv2A 296 1.40e-07 c.69.1.8 34680 1a8uA 277 1.63e-07 c.69.1.12 34703 1yasA 257 1.66e-07 c.69.1.20 34801 2o7rA 338 1.77e-07 1e8nA 710 1.77e-07 b.69.7.1,c.69.1.4 27675,34643 1brtA 277 1.87e-07 c.69.1.12 34699 2puhA 286 1.95e-07 1m33A 258 1.95e-07 c.69.1.26 78514 1ehyA 294 2.09e-07 c.69.1.11 34693 1yr2A 741 2.58e-07 1bn6A 294 2.60e-07 c.69.1.8 34678 1a8sA 273 2.71e-07 c.69.1.12 34710 1jkmA 358 2.83e-07 c.69.1.2 34633 2rauA 354 3.16e-07 1h2wA 710 3.19e-07 b.69.7.1,c.69.1.4 76596,76597 3c8dA 403 3.22e-07 1qj4A 257 3.38e-07 c.69.1.20 34796 2rhwA 283 3.63e-07 1wm1A 317 3.74e-07 c.69.1.7 109405 1ukcA 522 4.11e-07 c.69.1.17 107911 2psdA 318 5.21e-07 2cjpA 328 5.59e-07 1iz7A 295 5.62e-07 c.69.1.8 76982 1a8qA 274 6.22e-07 c.69.1.12 34702 2e3jA 356 6.30e-07 1mj5A 302 6.31e-07 c.69.1.8 91285 1dx4A 586 6.98e-07 c.69.1.1 34622 3bwxA 285 7.52e-07 2qjwA 176 7.57e-07 1cleA 534 7.89e-07 c.69.1.17 34771 1y37A 304 8.07e-07 3bf7A 255 8.35e-07 1r3dA 264 1.06e-06 c.69.1.35 111680 2fx5A 258 1.08e-06 2yysA 286 1.34e-06 2o2iA 300 1.65e-06 2bce 581 1.79e-06 1cvlA 319 2.87e-06 c.69.1.18 34786 2qvbA 297 3.08e-06 1ju3A 583 3.31e-06 b.18.1.13,c.69.1.21 67300,67301 2d80A 318 3.39e-06 1ys1X 320 4.21e-06 1qo7A 394 4.24e-06 c.69.1.11 34697 2qruA 274 4.50e-06 2pl5A 366 7.43e-06 1tahA 318 8.57e-06 c.69.1.18 34775 2d81A 318 8.68e-06 1qfmA 710 9.11e-06 b.69.7.1,c.69.1.4 27673,34641 1mpxA 615 1.30e-05 b.18.1.13,c.69.1.21 85041,85042 2gzsA 278 1.34e-05 1i6wA 181 1.60e-05 c.69.1.18 61859 1k8qA 377 2.29e-05 c.69.1.6 72177 1cvl 319 3.28e-05 1vkhA 273 3.43e-05 c.69.1.32 108662 3bdvA 191 3.68e-05 1lnsA 763 3.95e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1hlgA 371 4.80e-05 c.69.1.6 34656 1ispA 181 5.46e-05 c.69.1.18 76778 2qs9A 194 6.84e-05 2b61A 377 8.82e-05 1qlwA 328 0.000109 c.69.1.15 34722 1thtA 305 0.000117 c.69.1.13 34711 1mnaA 298 0.000130 c.69.1.22 79322 2veoA 441 0.000152 1mo2A 294 0.000191 c.69.1.22 79331 1tcaA 317 0.000451 c.69.1.17 34726 1bu8A 452 0.000453 b.12.1.2,c.69.1.19 23647,34795 1ycdA 243 0.000472 1gpl 432 0.000490 1kezA 300 0.001440 c.69.1.22 68546 1tca 317 0.001689 1hplA 449 0.003754 b.12.1.2,c.69.1.19 23639,34787 1uxoA 192 0.008344 c.69.1.31 108121 2q0xA 335 0.01073 1pjaA 302 0.01650 c.69.1.13 94758 1tib 269 0.04962 1ivyA 452 0.08434 c.69.1.5 34654 1whtA 256 0.09386 c.69.1.5 34646 1bcsA 263 0.1264 c.69.1.5 34647 1whsA 255 0.1350 c.69.1.5 34649 1gt6A 269 0.1848 c.69.1.17 76342 1eiwA 111 0.2728 c.23.3.1 31130 1tibA 269 0.3291 c.69.1.17 34738 1uswA 260 0.4056 c.69.1.17 99895 1ac5A 483 0.5116 c.69.1.5 34653 1uwcA 261 0.6575 c.69.1.17 100101 2bjhA 260 0.6597 1ei9A 279 0.6693 c.69.1.13 34713 3tglA 269 0.7536 c.69.1.17 34733 2hfkA 319 1.022 1ac5 483 1.515 1j8mF 297 1.581 a.24.13.1,c.37.1.10 62742,62743 1ku0A 388 1.722 c.69.1.18 72994 2oryA 346 2.297 2cb9A 244 2.475 1ic6A 279 2.536 c.41.1.1 62257 1lgyA 269 2.855 c.69.1.17 34758 1i52A 236 4.557 c.68.1.13 61767 2dsnA 387 4.843 2qvpA 275 6.423 2pgnA 589 6.668 1o2dA 371 8.212 e.22.1.2 86591 2q7xA 326 10.56 2z5gA 387 14.42 3c8uA 208 19.63 2b81A 323 20.40 2g1pA 278 21.28 2i7cA 283 21.88 3cdxA 354 22.31 1e8cA 498 22.44 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1rz3A 201 23.54 c.37.1.6 98132 1drwA 273 25.27 c.2.1.3,d.81.1.3 30057,39972 2qt1A 207 25.42 2d73A 738 27.25 1ceoA 343 28.30 c.1.8.3 28808 2qm8A 337 28.63 2ctc 307 28.72 1sq5A 308 29.13 c.37.1.6 105882 2px6A 316 30.08 1uirA 314 31.17 c.66.1.17 99429 1p9lA 245 31.33 c.2.1.3,d.81.1.3 94393,94394 2ez9A 603 32.16 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1j3gA 187 32.52 d.118.1.1 77075 2o07A 304 33.02 c.66.1.17 138862 3c6kA 381 33.15 2yvuA 186 34.40 2bz1A 196 37.65 c.144.1.1 129532 1dptA 117 38.00 d.80.1.3 39862 1ne7A 289 40.02 c.124.1.1 91833 1t9bA 677 40.26 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1bunB 61 42.03 g.8.1.1 44552 2j0wA 449 43.19 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 1eceA 358 43.85 c.1.8.3 28813 1qnrA 344 43.99 c.1.8.3 28834 1kbjA 412 47.60 c.1.4.1 72280 2bmaA 470 48.19 1z5rA 306 53.80 c.56.5.1 124488 1vmaA 306 53.90 a.24.13.1,c.37.1.10 108887,108888 2p5tB 253 54.31 1m7gA 211 54.90 c.37.1.4 78724 2hszA 243 56.57 c.108.1.6 136726 1wviA 257 56.80 c.108.1.14 114915 2djiA 590 57.02 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1bu6O 501 58.38 c.55.1.4,c.55.1.4 33499,33500 2ax4A 198 58.46 1cz1A 394 58.50 c.1.8.3 28839 2jejA 358 59.42 d.240.1.1,e.8.1.7 138284,138285 2ag6A 314 60.22 3c3pA 210 60.33 1ekzA 76 60.90 d.50.1.1 38783 1ybhA 590 61.00 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2hdoA 209 61.22 c.108.1.6 136345 2z20A 432 62.00 1pydA 556 63.80 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1o08A 221 64.21 c.108.1.6 86525 2fcrA 173 65.61 c.23.5.1 31151 1jakA 512 65.98 c.1.8.6,d.92.2.1 66472,66473 1b3bA 415 68.20 c.2.1.7,c.58.1.1 30244,33892 2dpmA 284 68.62 c.66.1.28 34246 2nxoA 291 68.88 1x05A 129 69.00 b.55.1.1 121543 1eqcA 394 70.69 c.1.8.3 28811 1uj2A 252 70.90 c.37.1.6 99452 1zr0B 63 70.93 2hx1A 284 72.95 2dyuA 334 73.30 3b2yA 275 73.74 1vjrA 271 74.06 c.108.1.14 100832 1sh7A 284 74.25 1kthA 58 74.25 g.8.1.1 68863 1j7xA 302 74.44 c.14.1.2 66425 1gs5A 258 75.14 c.73.1.2 70395 2oasA 436 75.85 1e32A 458 77.66 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1x7oA 287 78.10 1qpbA 563 78.26 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1to6A 371 78.79 c.141.1.1 107170 1eg5A 384 79.12 c.67.1.3 34429 1g6xA 58 80.09 g.8.1.1 60320 1bavA 309 81.50 c.56.5.1 33806 2zf5O 497 82.49 1f5sA 211 82.50 c.108.1.4 59656 1mkyA 439 82.81 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1esmA 316 83.05 c.37.1.6 31953 1fc4A 401 85.03 c.67.1.4 59760 1vjzA 341 86.02 c.1.8.3 100838 2czqA 205 86.70 1d3gA 367 87.21 c.1.4.1 28600 2cftA 298 88.91 1poxA 585 89.32 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1aalA 58 89.40 g.8.1.1 44472