# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o2gA 223 1.68e-07 1ufoA 238 2.11e-07 c.69.1.27 99344 2i3dA 249 2.87e-07 1jjfA 268 2.96e-07 c.69.1.2 66765 1fj2A 232 3.58e-07 c.69.1.14 34720 2d5lA 706 4.60e-07 3bdiA 207 5.30e-07 1jfrA 262 5.50e-07 c.69.1.16 34724 1imjA 210 6.21e-07 c.69.1.23 71246 1auoA 218 6.76e-07 c.69.1.14 34716 1l7aA 318 6.94e-07 c.69.1.25 77772 2jbwA 386 7.16e-07 1mtzA 293 7.75e-07 c.69.1.7 79467 1lzlA 323 8.12e-07 c.69.1.2 78306 1orvA 728 9.71e-07 b.70.3.1,c.69.1.24 87354,87355 2z3zA 706 1.19e-06 2hm7A 310 1.20e-06 2hu5A 582 1.32e-06 b.69.7.2,c.69.1.33 136763,136764 1u4nA 310 1.44e-06 c.69.1.2 113021 2hdwA 367 1.67e-06 2h7cA 542 1.94e-06 c.69.1.1 136207 1thgA 544 2.02e-06 c.69.1.17 34763 1qe3A 489 2.34e-06 c.69.1.1 34630 1r88A 280 2.67e-06 c.69.1.3 97219 1womA 271 2.75e-06 2fukA 220 2.80e-06 1p0iA 529 2.84e-06 c.69.1.1 93867 1c4xA 285 2.87e-06 c.69.1.10 34684 1u2eA 289 2.93e-06 2r8bA 251 3.16e-06 1pv1A 299 3.54e-06 c.69.1.34 111639 3bixA 574 3.55e-06 1jjiA 311 3.60e-06 c.69.1.2 66766 1f0nA 285 3.80e-06 c.69.1.3 34636 1c7iA 489 3.83e-06 c.69.1.1 34632 1j1iA 296 3.88e-06 c.69.1.10 83977 1zoiA 276 4.36e-06 1cr6B 554 4.61e-06 c.69.1.11,c.108.1.2 34688,43338 1b6g 310 5.02e-06 1c7jA 489 5.04e-06 c.69.1.1 34631 2ogtA 498 5.27e-06 1zi8A 236 5.31e-06 1a88A 275 5.42e-06 c.69.1.12 34707 1broA 277 5.68e-06 c.69.1.12 34700 2ocgA 254 5.96e-06 3bxpA 277 6.47e-06 2uz0A 263 6.71e-06 1gkkA 297 6.77e-06 c.69.1.2 65248 1xfdA 723 7.99e-06 b.70.3.1,c.69.1.24 115251,115252 1brt 277 8.24e-06 1qtrA 317 8.27e-06 c.69.1.7 34660 1vlqA 337 8.51e-06 c.69.1.25 108848 1tqhA 247 8.80e-06 c.69.1.29 107225 1ede 310 9.36e-06 1aqlA 532 9.39e-06 c.69.1.1 34627 2qm0A 275 9.57e-06 1ea5A 537 1.01e-05 c.69.1.1 34592 1wb4A 297 1.05e-05 c.69.1.2 120827 1thg 544 1.07e-05 1va4A 279 1.10e-05 c.69.1.12 108458 1b6gA 310 1.22e-05 c.69.1.8 34661 1xqwA 293 1.27e-05 2qmqA 286 1.34e-05 1azwA 313 1.44e-05 c.69.1.7 34658 1xklA 273 1.46e-05 c.69.1.20 115410 1dqyA 283 1.47e-05 c.69.1.3 34640 1zd3A 555 1.52e-05 c.108.1.2,c.69.1.11 124930,124931 1hkhA 279 1.56e-05 c.69.1.12 90628 1h2xA 710 1.57e-05 b.69.7.1,c.69.1.4 76598,76599 2bceA 585 1.63e-05 c.69.1.1 34625 1uk8A 282 1.68e-05 c.69.1.10 107907 1dqzA 280 1.76e-05 c.69.1.3 34638 1yasA 257 1.84e-05 c.69.1.20 34801 1q0rA 298 1.90e-05 c.69.1.28 95508 1o6gA 710 1.92e-05 b.69.7.1,c.69.1.4 81087,81088 2og1A 286 2.07e-05 1din 236 2.12e-05 3b5eA 223 2.15e-05 1a8uA 277 2.17e-05 c.69.1.12 34703 2bklA 695 2.22e-05 1brtA 277 2.28e-05 c.69.1.12 34699 2pujA 286 2.30e-05 1a8sA 273 2.31e-05 c.69.1.12 34710 1r1dA 247 2.43e-05 c.69.1.29 96813 1llfA 534 2.48e-05 c.69.1.17 78094 3c5vA 316 2.52e-05 2puhA 286 2.89e-05 2pblA 262 2.98e-05 1ggvA 232 3.07e-05 c.69.1.9 34683 2o7rA 338 3.18e-05 1cqwA 295 3.45e-05 c.69.1.8 34679 1m33A 258 3.56e-05 c.69.1.26 78514 2b20A 403 3.82e-05 b.1.18.20,c.69.1.2 127685,127686 1ehyA 294 3.85e-05 c.69.1.11 34693 1bn7A 294 4.25e-05 c.69.1.8 34677 2rhwA 283 4.26e-05 1qj4A 257 4.70e-05 c.69.1.20 34796 1a8qA 274 4.81e-05 c.69.1.12 34702 2e3jA 356 5.03e-05 1jkmA 358 5.34e-05 c.69.1.2 34633 2rauA 354 5.46e-05 1bn6A 294 5.55e-05 c.69.1.8 34678 3bwxA 285 5.65e-05 2cjpA 328 5.80e-05 2psdA 318 6.25e-05 1e8nA 710 6.35e-05 b.69.7.1,c.69.1.4 27675,34643 1ukcA 522 6.77e-05 c.69.1.17 107911 1wm1A 317 6.78e-05 c.69.1.7 109405 1r3dA 264 6.90e-05 c.69.1.35 111680 1cv2A 296 6.98e-05 c.69.1.8 34680 3bf7A 255 8.07e-05 1dx4A 586 9.29e-05 c.69.1.1 34622 1y37A 304 9.31e-05 2yysA 286 9.84e-05 2fx5A 258 9.84e-05 1yr2A 741 0.000101 2qjwA 176 0.000105 1h2wA 710 0.000109 b.69.7.1,c.69.1.4 76596,76597 1iz7A 295 0.000111 c.69.1.8 76982 1cleA 534 0.000132 c.69.1.17 34771 2o2iA 300 0.000138 1mj5A 302 0.000138 c.69.1.8 91285 3c8dA 403 0.000151 2bce 581 0.000162 1cvlA 319 0.000204 c.69.1.18 34786 2qvbA 297 0.000216 1ys1X 320 0.000257 1ju3A 583 0.000274 b.18.1.13,c.69.1.21 67300,67301 1qo7A 394 0.000353 c.69.1.11 34697 2d80A 318 0.000527 1tahA 318 0.000537 c.69.1.18 34775 1qfmA 710 0.000814 b.69.7.1,c.69.1.4 27673,34641 1i6wA 181 0.000852 c.69.1.18 61859 2gzsA 278 0.000878 3bdvA 191 0.000959 2d81A 318 0.000991 2qruA 274 0.001006 1cvl 319 0.001259 2pl5A 366 0.001315 1ispA 181 0.001480 c.69.1.18 76778 1lnsA 763 0.001656 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1mpxA 615 0.002009 b.18.1.13,c.69.1.21 85041,85042 1k8qA 377 0.002203 c.69.1.6 72177 1hlgA 371 0.002996 c.69.1.6 34656 1qlwA 328 0.003098 c.69.1.15 34722 1ycdA 243 0.004193 1vkhA 273 0.004365 c.69.1.32 108662 2qs9A 194 0.005875 1thtA 305 0.006533 c.69.1.13 34711 1mnaA 298 0.007484 c.69.1.22 79322 2b61A 377 0.008019 2veoA 441 0.008716 1tcaA 317 0.009489 c.69.1.17 34726 1bu8A 452 0.01348 b.12.1.2,c.69.1.19 23647,34795 1gpl 432 0.01643 1mo2A 294 0.02628 c.69.1.22 79331 1tca 317 0.03479 1kezA 300 0.03940 c.69.1.22 68546 1hplA 449 0.05403 b.12.1.2,c.69.1.19 23639,34787 1uxoA 192 0.1118 c.69.1.31 108121 1pjaA 302 0.1123 c.69.1.13 94758 2q0xA 335 0.1628 1tib 269 0.8212 1ivyA 452 1.126 c.69.1.5 34654 1bcsA 263 1.250 c.69.1.5 34647 1whtA 256 1.262 c.69.1.5 34646 1whsA 255 1.320 c.69.1.5 34649 1gt6A 269 1.801 c.69.1.17 76342 1eiwA 111 2.098 c.23.3.1 31130 1uswA 260 2.505 c.69.1.17 99895 1ei9A 279 2.693 c.69.1.13 34713 1tibA 269 3.049 c.69.1.17 34738 3tglA 269 3.383 c.69.1.17 34733 2hfkA 319 3.834 1ku0A 388 4.261 c.69.1.18 72994 1uwcA 261 4.794 c.69.1.17 100101 2bjhA 260 5.679 1j8mF 297 6.409 a.24.13.1,c.37.1.10 62742,62743 2oryA 346 6.777 1ac5 483 7.940 1lgyA 269 8.575 c.69.1.17 34758 2cb9A 244 8.701 2dsnA 387 11.66 2qvpA 275 12.96 1o2dA 371 13.16 e.22.1.2 86591 1i52A 236 14.22 c.68.1.13 61767 1ac5A 483 15.62 c.69.1.5 34653 2b81A 323 19.13 1jmkC 230 22.40 c.69.1.22 71747 1rz3A 201 24.97 c.37.1.6 98132 1ic6A 279 28.87 c.41.1.1 62257 3c8uA 208 29.35 1bunB 61 31.94 g.8.1.1 44552 1zr0B 63 31.97 2z5gA 387 32.00 1e8cA 498 33.02 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1uirA 314 36.33 c.66.1.17 99429 2yvuA 186 38.62 1drwA 273 42.44 c.2.1.3,d.81.1.3 30057,39972 1aalA 58 43.48 g.8.1.1 44472 2c4nA 250 43.77 c.108.1.14 129837 2gn0A 342 43.89 1g6xA 58 44.09 g.8.1.1 60320 1ceoA 343 44.67 c.1.8.3 28808 1kthA 58 44.69 g.8.1.1 68863 2i7cA 283 46.20 1ne7A 289 48.76 c.124.1.1 91833 1bqg 451 50.00 2px6A 316 51.08 1pydA 556 51.61 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2d73A 738 51.71 1qnrA 344 55.42 c.1.8.3 28834 1wviA 257 55.51 c.108.1.14 114915 2h5eA 529 55.56 1gx1A 160 56.11 d.79.5.1 70675 1v5tA 90 57.03 d.15.1.1 108385 2fi3I 58 57.07 1j3gA 187 57.62 d.118.1.1 77075 2scuA 288 61.28 c.2.1.8,c.23.4.1 30303,31131 1aoxA 203 62.13 c.62.1.1 34151 1dptA 117 62.62 d.80.1.3 39862 1qpbA 563 64.10 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2g1pA 278 66.18 1eceA 358 66.39 c.1.8.3 28813 1m7gA 211 66.46 c.37.1.4 78724 2z20A 432 67.31 1fs5A 266 67.37 c.124.1.1 65044 1scuA 288 69.37 c.2.1.8,c.23.4.1 30307,31135 1v7pC 200 69.81 c.62.1.1 108408 2ivnA 330 72.58 1lehA 364 74.65 c.2.1.7,c.58.1.1 30268,33916 2dokA 186 74.88 2f9iB 285 75.74 2hx1A 284 76.80 1yixA 265 76.88 c.1.9.12 123371 2csuA 457 79.16 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1e32A 458 79.20 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1eudA 311 79.34 c.2.1.8,c.23.4.1 30312,31140 2bkxA 242 80.64 1aapA 58 83.80 g.8.1.1 44543 2am1A 454 84.26 1v2dA 381 84.73 c.67.1.1 108281 2pgnA 589 84.83 2ay1A 394 85.47 c.67.1.1 34357 2vhjA 331 85.60 1hl9A 449 85.65 b.71.1.3,c.1.8.11 90650,90651 2o07A 304 85.67 c.66.1.17 138862 1gci 269 86.15 2o6lA 170 89.30