# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 1.54e-11 c.69.1.27 99344 1fj2A 232 2.64e-11 c.69.1.14 34720 2i3dA 249 4.49e-11 1jjfA 268 6.40e-11 c.69.1.2 66765 2o2gA 223 7.38e-11 2d5lA 706 7.80e-11 1l7aA 318 1.05e-10 c.69.1.25 77772 1auoA 218 1.63e-10 c.69.1.14 34716 2jbwA 386 3.01e-10 3bdiA 207 3.28e-10 1mtzA 293 3.64e-10 c.69.1.7 79467 1imjA 210 3.82e-10 c.69.1.23 71246 1jfrA 262 3.89e-10 c.69.1.16 34724 2h7cA 542 5.13e-10 c.69.1.1 136207 2z3zA 706 5.61e-10 2hu5A 582 5.80e-10 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 8.61e-10 b.70.3.1,c.69.1.24 87354,87355 1lzlA 323 8.73e-10 c.69.1.2 78306 1thgA 544 9.02e-10 c.69.1.17 34763 1u4nA 310 9.50e-10 c.69.1.2 113021 2fukA 220 1.04e-09 2r8bA 251 1.28e-09 2hm7A 310 1.30e-09 1qe3A 489 1.78e-09 c.69.1.1 34630 1p0iA 529 1.93e-09 c.69.1.1 93867 1u2eA 289 2.08e-09 1c7iA 489 2.13e-09 c.69.1.1 34632 1r88A 280 2.21e-09 c.69.1.3 97219 1zi8A 236 2.33e-09 1j1iA 296 2.62e-09 c.69.1.10 83977 2ogtA 498 2.70e-09 1ea5A 537 2.99e-09 c.69.1.1 34592 1pv1A 299 3.10e-09 c.69.1.34 111639 1c4xA 285 3.23e-09 c.69.1.10 34684 3bixA 574 3.24e-09 1f0nA 285 3.35e-09 c.69.1.3 34636 1c7jA 489 3.37e-09 c.69.1.1 34631 1womA 271 3.38e-09 2hdwA 367 3.59e-09 2pblA 262 4.97e-09 1wb4A 297 5.07e-09 c.69.1.2 120827 1gkkA 297 5.19e-09 c.69.1.2 65248 1cr6B 554 6.37e-09 c.69.1.11,c.108.1.2 34688,43338 1b6g 310 6.81e-09 3bxpA 277 6.92e-09 1h2xA 710 7.99e-09 b.69.7.1,c.69.1.4 76598,76599 1aqlA 532 8.08e-09 c.69.1.1 34627 2ocgA 254 9.12e-09 1jjiA 311 9.69e-09 c.69.1.2 66766 1a88A 275 9.84e-09 c.69.1.12 34707 1thg 544 1.03e-08 1tqhA 247 1.13e-08 c.69.1.29 107225 1vlqA 337 1.19e-08 c.69.1.25 108848 1zoiA 276 1.22e-08 2uz0A 263 1.28e-08 1qtrA 317 1.35e-08 c.69.1.7 34660 2qm0A 275 1.63e-08 1broA 277 1.71e-08 c.69.1.12 34700 1xfdA 723 1.78e-08 b.70.3.1,c.69.1.24 115251,115252 1o6gA 710 1.82e-08 b.69.7.1,c.69.1.4 81087,81088 1ede 310 2.13e-08 1b6gA 310 2.19e-08 c.69.1.8 34661 1brt 277 2.33e-08 2rauA 354 2.38e-08 1din 236 2.40e-08 1xqwA 293 2.57e-08 2bceA 585 2.68e-08 c.69.1.1 34625 1zd3A 555 2.73e-08 c.108.1.2,c.69.1.11 124930,124931 1llfA 534 2.81e-08 c.69.1.17 78094 3c5vA 316 2.85e-08 1azwA 313 2.87e-08 c.69.1.7 34658 1dqzA 280 3.03e-08 c.69.1.3 34638 1dqyA 283 3.04e-08 c.69.1.3 34640 2qmqA 286 3.36e-08 1va4A 279 3.37e-08 c.69.1.12 108458 1uk8A 282 3.67e-08 c.69.1.10 107907 1hkhA 279 4.01e-08 c.69.1.12 90628 3b5eA 223 4.15e-08 1ggvA 232 4.48e-08 c.69.1.9 34683 2o7rA 338 4.65e-08 2og1A 286 5.12e-08 1cqwA 295 5.22e-08 c.69.1.8 34679 2b20A 403 5.41e-08 b.1.18.20,c.69.1.2 127685,127686 1r1dA 247 5.51e-08 c.69.1.29 96813 1m33A 258 6.57e-08 c.69.1.26 78514 1bn7A 294 6.84e-08 c.69.1.8 34677 2bklA 695 7.46e-08 2pujA 286 7.86e-08 1q0rA 298 8.36e-08 c.69.1.28 95508 1cv2A 296 8.39e-08 c.69.1.8 34680 1xklA 273 9.40e-08 c.69.1.20 115410 1bn6A 294 9.82e-08 c.69.1.8 34678 1a8uA 277 1.09e-07 c.69.1.12 34703 1ehyA 294 1.17e-07 c.69.1.11 34693 1yr2A 741 1.23e-07 1e8nA 710 1.23e-07 b.69.7.1,c.69.1.4 27675,34643 1yasA 257 1.27e-07 c.69.1.20 34801 1a8sA 273 1.34e-07 c.69.1.12 34710 2puhA 286 1.38e-07 1brtA 277 1.51e-07 c.69.1.12 34699 2qjwA 176 1.82e-07 1cleA 534 1.95e-07 c.69.1.17 34771 1ukcA 522 1.97e-07 c.69.1.17 107911 2rhwA 283 2.00e-07 1h2wA 710 2.06e-07 b.69.7.1,c.69.1.4 76596,76597 2e3jA 356 2.09e-07 1iz7A 295 2.19e-07 c.69.1.8 76982 1jkmA 358 2.32e-07 c.69.1.2 34633 1dx4A 586 2.45e-07 c.69.1.1 34622 1wm1A 317 2.51e-07 c.69.1.7 109405 2cjpA 328 2.63e-07 1y37A 304 2.65e-07 2psdA 318 2.74e-07 1qj4A 257 3.12e-07 c.69.1.20 34796 3c8dA 403 3.24e-07 1mj5A 302 3.27e-07 c.69.1.8 91285 1r3dA 264 3.55e-07 c.69.1.35 111680 3bf7A 255 4.63e-07 2o2iA 300 4.66e-07 1a8qA 274 4.96e-07 c.69.1.12 34702 3bwxA 285 5.29e-07 2bce 581 6.12e-07 2fx5A 258 6.73e-07 2yysA 286 7.24e-07 2qvbA 297 9.55e-07 1cvlA 319 1.13e-06 c.69.1.18 34786 2d80A 318 1.52e-06 1ys1X 320 1.63e-06 1tahA 318 3.20e-06 c.69.1.18 34775 1ju3A 583 4.10e-06 b.18.1.13,c.69.1.21 67300,67301 2pl5A 366 4.46e-06 1qo7A 394 4.53e-06 c.69.1.11 34697 2d81A 318 4.96e-06 3bdvA 191 6.87e-06 2qruA 274 7.77e-06 1i6wA 181 7.93e-06 c.69.1.18 61859 1qfmA 710 1.01e-05 b.69.7.1,c.69.1.4 27673,34641 1cvl 319 1.60e-05 2gzsA 278 1.75e-05 1mpxA 615 1.87e-05 b.18.1.13,c.69.1.21 85041,85042 1lnsA 763 2.33e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ispA 181 2.85e-05 c.69.1.18 76778 1vkhA 273 3.75e-05 c.69.1.32 108662 2b61A 377 7.68e-05 1k8qA 377 9.22e-05 c.69.1.6 72177 1qlwA 328 0.000120 c.69.1.15 34722 1thtA 305 0.000125 c.69.1.13 34711 1mnaA 298 0.000129 c.69.1.22 79322 1hlgA 371 0.000167 c.69.1.6 34656 2qs9A 194 0.000199 1bu8A 452 0.000199 b.12.1.2,c.69.1.19 23647,34795 1ycdA 243 0.000216 1mo2A 294 0.000244 c.69.1.22 79331 2veoA 441 0.000247 1tcaA 317 0.000364 c.69.1.17 34726 1gpl 432 0.000372 1tca 317 0.001591 1kezA 300 0.002344 c.69.1.22 68546 1hplA 449 0.002485 b.12.1.2,c.69.1.19 23639,34787 1uxoA 192 0.007162 c.69.1.31 108121 2q0xA 335 0.01024 1pjaA 302 0.01035 c.69.1.13 94758 1tib 269 0.1144 1ivyA 452 0.2265 c.69.1.5 34654 1whtA 256 0.2542 c.69.1.5 34646 1bcsA 263 0.3965 c.69.1.5 34647 1eiwA 111 0.4695 c.23.3.1 31130 1gt6A 269 0.4928 c.69.1.17 76342 1whsA 255 0.5040 c.69.1.5 34649 1tibA 269 0.5115 c.69.1.17 34738 2hfkA 319 0.6012 1uswA 260 0.6787 c.69.1.17 99895 1uwcA 261 1.010 c.69.1.17 100101 1ei9A 279 1.141 c.69.1.13 34713 3tglA 269 1.143 c.69.1.17 34733 2bjhA 260 1.429 1ku0A 388 1.892 c.69.1.18 72994 1lgyA 269 2.241 c.69.1.17 34758 1j8mF 297 2.499 a.24.13.1,c.37.1.10 62742,62743 2cb9A 244 2.632 2oryA 346 2.806 1i52A 236 3.993 c.68.1.13 61767 1ic6A 279 4.134 c.41.1.1 62257 1ac5A 483 4.203 c.69.1.5 34653 2qvpA 275 4.616 2dsnA 387 5.077 1ac5 483 5.092 1o2dA 371 11.67 e.22.1.2 86591 2pgnA 589 13.58 3ckkA 235 13.69 1e8cA 498 15.14 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2z5gA 387 15.61 2q7xA 326 15.93 2fywA 267 17.11 c.135.1.1 134408 1j3gA 187 17.48 d.118.1.1 77075 1bunB 61 19.82 g.8.1.1 44552 2g1pA 278 20.28 1drwA 273 20.90 c.2.1.3,d.81.1.3 30057,39972 1ceoA 343 21.11 c.1.8.3 28808 2jejA 358 23.18 d.240.1.1,e.8.1.7 138284,138285 2b81A 323 23.35 1m41A 380 28.27 c.1.16.4 78595 1ezwA 349 28.52 c.1.16.3 29558 2d73A 738 31.36 2yvuA 186 31.39 1rz3A 201 31.58 c.37.1.6 98132 2ez9A 603 32.61 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2hx1A 284 33.94 1eceA 358 34.00 c.1.8.3 28813 1poxA 585 35.69 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1zr0B 63 35.78 1t9bA 677 36.34 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1qpbA 563 38.65 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 3c6kA 381 41.17 1jmkC 230 41.95 c.69.1.22 71747 2px6A 316 42.17 1ybhA 590 42.42 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1b3bA 415 42.76 c.2.1.7,c.58.1.1 30244,33892 1lehA 364 42.83 c.2.1.7,c.58.1.1 30268,33916 1kthA 58 43.59 g.8.1.1 68863 2bz1A 196 44.63 c.144.1.1 129532 2dpmA 284 45.37 c.66.1.28 34246 3c8uA 208 45.51 3cdxA 354 47.57 2djiA 590 48.00 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2cmuA 342 48.08 1z0nA 96 48.81 1g6xA 58 49.13 g.8.1.1 60320 1to6A 371 49.14 c.141.1.1 107170 1gs5A 258 49.68 c.73.1.2 70395 1m1sA 116 51.68 b.1.11.2 84747 1aalA 58 52.06 g.8.1.1 44472 1m7gA 211 52.72 c.37.1.4 78724 1ekzA 76 52.80 d.50.1.1 38783 2p5tB 253 53.46 1z5rA 306 53.47 c.56.5.1 124488 2ivfA 976 55.14 2ctc 307 58.21 1h0hA 977 58.41 b.52.2.2,c.81.1.1 76435,76436 1p9lA 245 59.61 c.2.1.3,d.81.1.3 94393,94394 1jakA 512 60.40 c.1.8.6,d.92.2.1 66472,66473 2q62A 247 62.32 1pydA 556 62.41 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1b26A 416 62.73 c.2.1.7,c.58.1.1 30232,33880 1wviA 257 62.96 c.108.1.14 114915 1ne7A 289 64.23 c.124.1.1 91833 1fc4A 401 65.04 c.67.1.4 59760 2i7cA 283 65.18 1nqkA 381 65.59 c.1.16.4 92050 1x05A 129 65.93 b.55.1.1 121543 2pooA 355 67.59 b.68.3.1 27626 1d3gA 367 68.72 c.1.4.1 28600 2bmaA 470 68.96 1dptA 117 69.18 d.80.1.3 39862 2csuA 457 70.39 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1aapA 58 71.45 g.8.1.1 44543 1x9iA 302 71.49 c.80.1.1 114997 2am1A 454 72.81 2zf5O 497 72.94 1qnrA 344 73.42 c.1.8.3 28834 2fi3I 58 73.54 1vk2A 204 74.78 c.18.1.2 100845 1ag9A 175 75.18 c.23.5.1 31178 1e32A 458 75.19 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1qw9A 502 75.39 b.71.1.2,c.1.8.3 96466,96467 1fs5A 266 76.48 c.124.1.1 65044 1eg5A 384 78.48 c.67.1.3 34429 2vhhA 405 78.99 2ax4A 198 79.62 1c7sA 858 79.80 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1k89 449 80.62 1gx1A 160 81.55 d.79.5.1 70675 1kbjA 412 81.57 c.1.4.1 72280 1hzdA 272 84.08 c.14.1.3 65969 1d6jA 211 84.55 c.37.1.4 31940 1f5sA 211 84.67 c.108.1.4 59656 2qt1A 207 85.09 1db3A 372 85.82 c.2.1.2 29813 1v4vA 376 86.09 c.87.1.3 100313 1v2dA 381 87.41 c.67.1.1 108281 2nxoA 291 88.59