# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 4.42e-11 c.69.1.27 99344 1fj2A 232 8.97e-11 c.69.1.14 34720 2i3dA 249 1.45e-10 1jjfA 268 1.52e-10 c.69.1.2 66765 2o2gA 223 2.31e-10 2d5lA 706 2.96e-10 1l7aA 318 3.85e-10 c.69.1.25 77772 1auoA 218 5.78e-10 c.69.1.14 34716 1imjA 210 9.44e-10 c.69.1.23 71246 3bdiA 207 9.49e-10 2jbwA 386 9.71e-10 1mtzA 293 1.09e-09 c.69.1.7 79467 1jfrA 262 1.25e-09 c.69.1.16 34724 2h7cA 542 1.52e-09 c.69.1.1 136207 2z3zA 706 1.56e-09 2hu5A 582 1.62e-09 b.69.7.2,c.69.1.33 136763,136764 1thgA 544 2.25e-09 c.69.1.17 34763 1orvA 728 2.28e-09 b.70.3.1,c.69.1.24 87354,87355 1lzlA 323 2.29e-09 c.69.1.2 78306 1u4nA 310 2.56e-09 c.69.1.2 113021 2fukA 220 2.85e-09 2r8bA 251 3.20e-09 2hm7A 310 3.46e-09 1u2eA 289 4.36e-09 1r88A 280 5.83e-09 c.69.1.3 97219 1zi8A 236 6.08e-09 1j1iA 296 6.34e-09 c.69.1.10 83977 1p0iA 529 6.69e-09 c.69.1.1 93867 1qe3A 489 6.84e-09 c.69.1.1 34630 1c7iA 489 7.02e-09 c.69.1.1 34632 1pv1A 299 7.08e-09 c.69.1.34 111639 1womA 271 7.30e-09 1c4xA 285 7.55e-09 c.69.1.10 34684 1ea5A 537 8.29e-09 c.69.1.1 34592 1f0nA 285 8.65e-09 c.69.1.3 34636 2ogtA 498 8.76e-09 1gkkA 297 9.85e-09 c.69.1.2 65248 2hdwA 367 9.90e-09 1c7jA 489 1.09e-08 c.69.1.1 34631 2pblA 262 1.11e-08 3bixA 574 1.12e-08 1wb4A 297 1.24e-08 c.69.1.2 120827 1b6g 310 1.42e-08 3bxpA 277 1.67e-08 1h2xA 710 1.78e-08 b.69.7.1,c.69.1.4 76598,76599 1cr6B 554 2.02e-08 c.69.1.11,c.108.1.2 34688,43338 2ocgA 254 2.13e-08 1a88A 275 2.17e-08 c.69.1.12 34707 1aqlA 532 2.20e-08 c.69.1.1 34627 1xfdA 723 2.72e-08 b.70.3.1,c.69.1.24 115251,115252 1vlqA 337 2.74e-08 c.69.1.25 108848 1jjiA 311 2.94e-08 c.69.1.2 66766 1tqhA 247 3.06e-08 c.69.1.29 107225 1thg 544 3.12e-08 1broA 277 3.13e-08 c.69.1.12 34700 1zoiA 276 3.22e-08 2uz0A 263 3.27e-08 2qm0A 275 3.42e-08 1b6gA 310 3.88e-08 c.69.1.8 34661 1qtrA 317 3.95e-08 c.69.1.7 34660 1o6gA 710 4.29e-08 b.69.7.1,c.69.1.4 81087,81088 1ede 310 4.33e-08 1brt 277 4.74e-08 1xqwA 293 5.53e-08 1din 236 5.71e-08 1dqyA 283 6.27e-08 c.69.1.3 34640 3c5vA 316 6.75e-08 2rauA 354 6.82e-08 2bceA 585 6.90e-08 c.69.1.1 34625 1dqzA 280 6.95e-08 c.69.1.3 34638 1azwA 313 7.12e-08 c.69.1.7 34658 1va4A 279 7.18e-08 c.69.1.12 108458 1uk8A 282 7.47e-08 c.69.1.10 107907 2qmqA 286 7.84e-08 1zd3A 555 8.04e-08 c.108.1.2,c.69.1.11 124930,124931 2og1A 286 8.14e-08 1hkhA 279 8.18e-08 c.69.1.12 90628 1ggvA 232 9.62e-08 c.69.1.9 34683 1llfA 534 9.81e-08 c.69.1.17 78094 2b20A 403 1.02e-07 b.1.18.20,c.69.1.2 127685,127686 3b5eA 223 1.05e-07 2o7rA 338 1.08e-07 1cqwA 295 1.22e-07 c.69.1.8 34679 2pujA 286 1.24e-07 2bklA 695 1.27e-07 1r1dA 247 1.30e-07 c.69.1.29 96813 1bn7A 294 1.50e-07 c.69.1.8 34677 1m33A 258 1.63e-07 c.69.1.26 78514 1a8uA 277 1.84e-07 c.69.1.12 34703 1xklA 273 1.84e-07 c.69.1.20 115410 1q0rA 298 1.88e-07 c.69.1.28 95508 2puhA 286 1.88e-07 1e8nA 710 1.90e-07 b.69.7.1,c.69.1.4 27675,34643 1bn6A 294 2.14e-07 c.69.1.8 34678 1ehyA 294 2.32e-07 c.69.1.11 34693 1cv2A 296 2.47e-07 c.69.1.8 34680 1yasA 257 2.51e-07 c.69.1.20 34801 2rhwA 283 2.88e-07 1a8sA 273 2.89e-07 c.69.1.12 34710 1brtA 277 2.98e-07 c.69.1.12 34699 1yr2A 741 3.03e-07 1h2wA 710 3.60e-07 b.69.7.1,c.69.1.4 76596,76597 2qjwA 176 3.61e-07 2e3jA 356 3.86e-07 1jkmA 358 4.60e-07 c.69.1.2 34633 3c8dA 403 5.03e-07 2cjpA 328 5.33e-07 1ukcA 522 5.43e-07 c.69.1.17 107911 1iz7A 295 5.46e-07 c.69.1.8 76982 1qj4A 257 5.73e-07 c.69.1.20 34796 1wm1A 317 5.74e-07 c.69.1.7 109405 2psdA 318 5.91e-07 1dx4A 586 6.01e-07 c.69.1.1 34622 1y37A 304 6.05e-07 1r3dA 264 6.22e-07 c.69.1.35 111680 1cleA 534 6.85e-07 c.69.1.17 34771 1mj5A 302 7.44e-07 c.69.1.8 91285 1a8qA 274 8.57e-07 c.69.1.12 34702 3bf7A 255 1.01e-06 2o2iA 300 1.13e-06 3bwxA 285 1.13e-06 2yysA 286 1.28e-06 2bce 581 1.34e-06 2fx5A 258 1.73e-06 1cvlA 319 2.15e-06 c.69.1.18 34786 2qvbA 297 2.22e-06 2d80A 318 2.82e-06 1ys1X 320 2.87e-06 1tahA 318 5.39e-06 c.69.1.18 34775 1ju3A 583 5.93e-06 b.18.1.13,c.69.1.21 67300,67301 1qo7A 394 7.11e-06 c.69.1.11 34697 3bdvA 191 9.34e-06 2d81A 318 9.59e-06 2qruA 274 1.02e-05 2pl5A 366 1.24e-05 1i6wA 181 1.52e-05 c.69.1.18 61859 1qfmA 710 1.57e-05 b.69.7.1,c.69.1.4 27673,34641 2gzsA 278 2.20e-05 1cvl 319 2.49e-05 1mpxA 615 3.42e-05 b.18.1.13,c.69.1.21 85041,85042 1lnsA 763 4.67e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1vkhA 273 5.19e-05 c.69.1.32 108662 1ispA 181 5.70e-05 c.69.1.18 76778 1k8qA 377 0.000129 c.69.1.6 72177 2b61A 377 0.000141 1qlwA 328 0.000150 c.69.1.15 34722 1thtA 305 0.000197 c.69.1.13 34711 2qs9A 194 0.000200 1mnaA 298 0.000229 c.69.1.22 79322 1ycdA 243 0.000241 1hlgA 371 0.000244 c.69.1.6 34656 1bu8A 452 0.000337 b.12.1.2,c.69.1.19 23647,34795 1mo2A 294 0.000341 c.69.1.22 79331 2veoA 441 0.000381 1tcaA 317 0.000469 c.69.1.17 34726 1gpl 432 0.000583 1tca 317 0.001781 1kezA 300 0.003515 c.69.1.22 68546 1hplA 449 0.004188 b.12.1.2,c.69.1.19 23639,34787 1uxoA 192 0.007560 c.69.1.31 108121 2q0xA 335 0.01111 1pjaA 302 0.01432 c.69.1.13 94758 1tib 269 0.1113 1ivyA 452 0.3207 c.69.1.5 34654 1whtA 256 0.3885 c.69.1.5 34646 1gt6A 269 0.4412 c.69.1.17 76342 1tibA 269 0.4813 c.69.1.17 34738 1eiwA 111 0.4960 c.23.3.1 31130 1bcsA 263 0.5988 c.69.1.5 34647 1uswA 260 0.6806 c.69.1.17 99895 2hfkA 319 0.6884 1whsA 255 0.7040 c.69.1.5 34649 1ei9A 279 1.039 c.69.1.13 34713 1uwcA 261 1.041 c.69.1.17 100101 2bjhA 260 1.346 1ku0A 388 1.484 c.69.1.18 72994 3tglA 269 1.536 c.69.1.17 34733 1lgyA 269 2.091 c.69.1.17 34758 1j8mF 297 2.288 a.24.13.1,c.37.1.10 62742,62743 1ac5A 483 2.551 c.69.1.5 34653 2oryA 346 2.579 1ic6A 279 3.338 c.41.1.1 62257 2cb9A 244 3.454 2dsnA 387 4.236 2qvpA 275 5.446 1ac5 483 5.556 1i52A 236 6.283 c.68.1.13 61767 1o2dA 371 7.660 e.22.1.2 86591 2pgnA 589 9.546 2q7xA 326 12.59 1e8cA 498 12.96 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1ceoA 343 14.64 c.1.8.3 28808 3ckkA 235 14.90 2z5gA 387 15.46 2b81A 323 16.19 2fywA 267 19.99 c.135.1.1 134408 2ez9A 603 20.96 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1j3gA 187 20.98 d.118.1.1 77075 1drwA 273 21.17 c.2.1.3,d.81.1.3 30057,39972 2d73A 738 21.46 1poxA 585 23.23 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1t9bA 677 24.08 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 3c6kA 381 25.31 2g1pA 278 25.57 2px6A 316 25.93 1ezwA 349 26.14 c.1.16.3 29558 2hx1A 284 27.38 1m41A 380 27.65 c.1.16.4 78595 1ybhA 590 28.73 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1rz3A 201 31.62 c.37.1.6 98132 2djiA 590 32.68 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2jejA 358 33.43 d.240.1.1,e.8.1.7 138284,138285 3cdxA 354 33.82 2yvuA 186 34.28 1eceA 358 34.54 c.1.8.3 28813 1p9lA 245 35.01 c.2.1.3,d.81.1.3 94393,94394 1bunB 61 35.61 g.8.1.1 44552 1jmkC 230 37.85 c.69.1.22 71747 2bz1A 196 40.07 c.144.1.1 129532 2p5tB 253 40.47 3c8uA 208 40.48 1qpbA 563 40.99 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1cz1A 394 42.06 c.1.8.3 28839 1kbjA 412 42.87 c.1.4.1 72280 1gs5A 258 43.29 c.73.1.2 70395 1b3bA 415 44.51 c.2.1.7,c.58.1.1 30244,33892 1eqcA 394 46.46 c.1.8.3 28811 1fc4A 401 47.87 c.67.1.4 59760 1x9iA 302 48.04 c.80.1.1 114997 1ne7A 289 48.26 c.124.1.1 91833 2dpmA 284 49.03 c.66.1.28 34246 2csuA 457 50.42 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1qnrA 344 50.58 c.1.8.3 28834 1zr0B 63 52.60 1lehA 364 52.79 c.2.1.7,c.58.1.1 30268,33916 1z5rA 306 53.78 c.56.5.1 124488 1wviA 257 55.00 c.108.1.14 114915 2qm8A 337 56.72 1fs5A 266 57.03 c.124.1.1 65044 1to6A 371 58.57 c.141.1.1 107170 1pydA 556 59.17 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1x05A 129 59.33 b.55.1.1 121543 2zf5O 497 59.71 2i7cA 283 60.15 1h0hA 977 61.59 b.52.2.2,c.81.1.1 76435,76436 1hzdA 272 62.24 c.14.1.3 65969 1m7gA 211 64.20 c.37.1.4 78724 1f5sA 211 65.27 c.108.1.4 59656 2q62A 247 66.77 1kthA 58 66.80 g.8.1.1 68863 1jakA 512 67.76 c.1.8.6,d.92.2.1 66472,66473 2ivfA 976 68.01 1qw9A 502 68.04 b.71.1.2,c.1.8.3 96466,96467 2bmaA 470 68.05 2ctc 307 68.88 1b26A 416 69.23 c.2.1.7,c.58.1.1 30232,33880 1ag9A 175 69.27 c.23.5.1 31178 2fcrA 173 69.30 c.23.5.1 31151 1owqA 361 69.45 c.1.8.5,d.26.3.1 104041,104042 1ekzA 76 70.55 d.50.1.1 38783 1aalA 58 70.93 g.8.1.1 44472 1g6xA 58 71.23 g.8.1.1 60320 2am1A 454 71.55 1dptA 117 72.39 d.80.1.3 39862 1bu6O 501 73.28 c.55.1.4,c.55.1.4 33499,33500 2nxoA 291 73.55 1vk2A 204 74.00 c.18.1.2 100845 1nqkA 381 75.17 c.1.16.4 92050 2cmuA 342 75.26 1vjrA 271 77.16 c.108.1.14 100832 1v2dA 381 78.66 c.67.1.1 108281 1o08A 221 79.85 c.108.1.6 86525 1gx1A 160 80.34 d.79.5.1 70675 2c31A 568 80.86 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1db3A 372 81.16 c.2.1.2 29813 1v4vA 376 82.16 c.87.1.3 100313 2vhhA 405 82.81 2qt1A 207 82.97 2ax4A 198 83.10 1eg5A 384 84.03 c.67.1.3 34429 1e32A 458 84.03 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1k89 449 84.75 1z0nA 96 86.28 1nfpA 228 87.52 c.1.16.2 29555 1ceo 343 87.58 1c7sA 858 88.67 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410