# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 1.12e-11 c.69.1.27 99344 1fj2A 232 2.50e-11 c.69.1.14 34720 2i3dA 249 4.03e-11 1jjfA 268 5.78e-11 c.69.1.2 66765 2d5lA 706 7.68e-11 2o2gA 223 7.95e-11 1l7aA 318 1.25e-10 c.69.1.25 77772 1auoA 218 1.66e-10 c.69.1.14 34716 1imjA 210 3.09e-10 c.69.1.23 71246 1mtzA 293 3.10e-10 c.69.1.7 79467 3bdiA 207 3.18e-10 2jbwA 386 3.31e-10 2h7cA 542 4.12e-10 c.69.1.1 136207 2z3zA 706 4.20e-10 2hu5A 582 4.47e-10 b.69.7.2,c.69.1.33 136763,136764 1jfrA 262 4.56e-10 c.69.1.16 34724 1thgA 544 6.63e-10 c.69.1.17 34763 1orvA 728 7.54e-10 b.70.3.1,c.69.1.24 87354,87355 1lzlA 323 7.73e-10 c.69.1.2 78306 1u4nA 310 9.08e-10 c.69.1.2 113021 2fukA 220 9.32e-10 2hm7A 310 1.25e-09 2r8bA 251 1.32e-09 1u2eA 289 1.55e-09 1zi8A 236 1.72e-09 1qe3A 489 2.00e-09 c.69.1.1 34630 1j1iA 296 2.02e-09 c.69.1.10 83977 1c7iA 489 2.18e-09 c.69.1.1 34632 1r88A 280 2.26e-09 c.69.1.3 97219 1p0iA 529 2.26e-09 c.69.1.1 93867 1c4xA 285 2.34e-09 c.69.1.10 34684 1f0nA 285 2.43e-09 c.69.1.3 34636 1womA 271 2.76e-09 2ogtA 498 2.76e-09 1pv1A 299 2.76e-09 c.69.1.34 111639 1gkkA 297 3.22e-09 c.69.1.2 65248 2pblA 262 3.26e-09 1ea5A 537 3.32e-09 c.69.1.1 34592 1wb4A 297 3.35e-09 c.69.1.2 120827 1c7jA 489 3.37e-09 c.69.1.1 34631 3bixA 574 3.71e-09 2hdwA 367 3.87e-09 3bxpA 277 5.73e-09 1cr6B 554 5.87e-09 c.69.1.11,c.108.1.2 34688,43338 1b6g 310 5.87e-09 1h2xA 710 6.36e-09 b.69.7.1,c.69.1.4 76598,76599 1a88A 275 6.80e-09 c.69.1.12 34707 2ocgA 254 8.04e-09 1aqlA 532 9.28e-09 c.69.1.1 34627 1thg 544 9.82e-09 1vlqA 337 1.04e-08 c.69.1.25 108848 1jjiA 311 1.08e-08 c.69.1.2 66766 1tqhA 247 1.12e-08 c.69.1.29 107225 1xfdA 723 1.16e-08 b.70.3.1,c.69.1.24 115251,115252 1qtrA 317 1.21e-08 c.69.1.7 34660 2uz0A 263 1.22e-08 1broA 277 1.24e-08 c.69.1.12 34700 1zoiA 276 1.35e-08 2qm0A 275 1.38e-08 1ede 310 1.62e-08 1b6gA 310 1.68e-08 c.69.1.8 34661 1o6gA 710 1.69e-08 b.69.7.1,c.69.1.4 81087,81088 1brt 277 1.83e-08 1xqwA 293 1.87e-08 1din 236 2.12e-08 2rauA 354 2.18e-08 2bceA 585 2.27e-08 c.69.1.1 34625 1azwA 313 2.40e-08 c.69.1.7 34658 1dqyA 283 2.40e-08 c.69.1.3 34640 1zd3A 555 2.41e-08 c.108.1.2,c.69.1.11 124930,124931 2qmqA 286 2.52e-08 1dqzA 280 2.53e-08 c.69.1.3 34638 3c5vA 316 2.54e-08 1uk8A 282 2.54e-08 c.69.1.10 107907 1va4A 279 2.86e-08 c.69.1.12 108458 1llfA 534 3.00e-08 c.69.1.17 78094 1hkhA 279 3.12e-08 c.69.1.12 90628 2og1A 286 3.31e-08 2b20A 403 3.53e-08 b.1.18.20,c.69.1.2 127685,127686 1ggvA 232 3.67e-08 c.69.1.9 34683 3b5eA 223 4.11e-08 2o7rA 338 4.38e-08 2pujA 286 4.58e-08 2bklA 695 4.87e-08 1cqwA 295 4.92e-08 c.69.1.8 34679 1bn7A 294 5.33e-08 c.69.1.8 34677 1r1dA 247 5.47e-08 c.69.1.29 96813 1m33A 258 6.06e-08 c.69.1.26 78514 1q0rA 298 6.29e-08 c.69.1.28 95508 1a8uA 277 7.83e-08 c.69.1.12 34703 2puhA 286 7.87e-08 1e8nA 710 7.97e-08 b.69.7.1,c.69.1.4 27675,34643 1cv2A 296 8.35e-08 c.69.1.8 34680 1ehyA 294 8.39e-08 c.69.1.11 34693 1xklA 273 8.42e-08 c.69.1.20 115410 1bn6A 294 8.57e-08 c.69.1.8 34678 1yasA 257 1.01e-07 c.69.1.20 34801 1brtA 277 1.06e-07 c.69.1.12 34699 1a8sA 273 1.14e-07 c.69.1.12 34710 1yr2A 741 1.19e-07 2rhwA 283 1.20e-07 2qjwA 176 1.49e-07 1h2wA 710 1.65e-07 b.69.7.1,c.69.1.4 76596,76597 2e3jA 356 1.87e-07 2cjpA 328 1.92e-07 1iz7A 295 1.95e-07 c.69.1.8 76982 1cleA 534 2.08e-07 c.69.1.17 34771 1ukcA 522 2.11e-07 c.69.1.17 107911 1qj4A 257 2.17e-07 c.69.1.20 34796 1wm1A 317 2.22e-07 c.69.1.7 109405 1dx4A 586 2.36e-07 c.69.1.1 34622 2psdA 318 2.42e-07 1y37A 304 2.66e-07 1jkmA 358 2.67e-07 c.69.1.2 34633 1mj5A 302 2.73e-07 c.69.1.8 91285 3c8dA 403 2.73e-07 1r3dA 264 2.99e-07 c.69.1.35 111680 3bf7A 255 3.64e-07 1a8qA 274 4.13e-07 c.69.1.12 34702 3bwxA 285 4.25e-07 2o2iA 300 4.64e-07 2bce 581 5.29e-07 2yysA 286 6.41e-07 2fx5A 258 6.59e-07 1cvlA 319 8.78e-07 c.69.1.18 34786 2qvbA 297 9.82e-07 2d80A 318 1.06e-06 1ys1X 320 1.28e-06 1tahA 318 2.63e-06 c.69.1.18 34775 1qo7A 394 2.96e-06 c.69.1.11 34697 1ju3A 583 3.34e-06 b.18.1.13,c.69.1.21 67300,67301 2d81A 318 3.86e-06 2pl5A 366 4.46e-06 2qruA 274 5.23e-06 3bdvA 191 5.27e-06 1i6wA 181 6.51e-06 c.69.1.18 61859 1qfmA 710 8.57e-06 b.69.7.1,c.69.1.4 27673,34641 1cvl 319 1.16e-05 2gzsA 278 1.29e-05 1mpxA 615 1.51e-05 b.18.1.13,c.69.1.21 85041,85042 1vkhA 273 2.14e-05 c.69.1.32 108662 1ispA 181 2.72e-05 c.69.1.18 76778 1lnsA 763 2.92e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1k8qA 377 5.94e-05 c.69.1.6 72177 2b61A 377 7.63e-05 1qlwA 328 9.33e-05 c.69.1.15 34722 1hlgA 371 9.56e-05 c.69.1.6 34656 1mnaA 298 0.000113 c.69.1.22 79322 2qs9A 194 0.000125 1ycdA 243 0.000126 1thtA 305 0.000143 c.69.1.13 34711 1mo2A 294 0.000186 c.69.1.22 79331 1bu8A 452 0.000210 b.12.1.2,c.69.1.19 23647,34795 2veoA 441 0.000250 1tcaA 317 0.000306 c.69.1.17 34726 1gpl 432 0.000361 1tca 317 0.001238 1kezA 300 0.002255 c.69.1.22 68546 1hplA 449 0.002785 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 0.006497 1uxoA 192 0.007106 c.69.1.31 108121 1pjaA 302 0.009580 c.69.1.13 94758 1tib 269 0.08653 1ivyA 452 0.2407 c.69.1.5 34654 1whtA 256 0.3380 c.69.1.5 34646 1gt6A 269 0.3441 c.69.1.17 76342 1tibA 269 0.3751 c.69.1.17 34738 1eiwA 111 0.3915 c.23.3.1 31130 2hfkA 319 0.4593 1bcsA 263 0.5127 c.69.1.5 34647 1ei9A 279 0.6828 c.69.1.13 34713 1whsA 255 0.6848 c.69.1.5 34649 1uswA 260 0.7037 c.69.1.17 99895 1uwcA 261 0.9806 c.69.1.17 100101 1ku0A 388 1.127 c.69.1.18 72994 3tglA 269 1.160 c.69.1.17 34733 2bjhA 260 1.599 1lgyA 269 2.089 c.69.1.17 34758 1ac5A 483 2.340 c.69.1.5 34653 1j8mF 297 2.393 a.24.13.1,c.37.1.10 62742,62743 2oryA 346 2.495 2cb9A 244 3.218 1ic6A 279 3.389 c.41.1.1 62257 2dsnA 387 3.688 2qvpA 275 3.781 1ac5 483 4.172 1i52A 236 6.327 c.68.1.13 61767 1o2dA 371 7.506 e.22.1.2 86591 2pgnA 589 8.918 1e8cA 498 10.05 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 3ckkA 235 12.63 1ceoA 343 12.87 c.1.8.3 28808 2z5gA 387 13.72 2b81A 323 15.37 2ez9A 603 16.25 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2q7xA 326 18.15 1m41A 380 20.25 c.1.16.4 78595 2fywA 267 20.92 c.135.1.1 134408 1drwA 273 21.08 c.2.1.3,d.81.1.3 30057,39972 1poxA 585 21.51 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1ezwA 349 22.90 c.1.16.3 29558 1eceA 358 23.25 c.1.8.3 28813 2jejA 358 24.04 d.240.1.1,e.8.1.7 138284,138285 1bunB 61 24.38 g.8.1.1 44552 1ybhA 590 25.01 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1t9bA 677 25.70 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 2hx1A 284 25.85 2d73A 738 25.96 2djiA 590 26.13 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2px6A 316 27.38 1j3gA 187 28.09 d.118.1.1 77075 1rz3A 201 28.97 c.37.1.6 98132 2yvuA 186 29.14 1qpbA 563 29.36 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2g1pA 278 29.72 2bz1A 196 33.88 c.144.1.1 129532 3c6kA 381 33.99 3cdxA 354 34.94 1zr0B 63 34.97 3c8uA 208 35.27 1jmkC 230 37.84 c.69.1.22 71747 1pydA 556 38.07 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1p9lA 245 38.42 c.2.1.3,d.81.1.3 94393,94394 1gs5A 258 40.21 c.73.1.2 70395 1x05A 129 41.24 b.55.1.1 121543 1cz1A 394 41.99 c.1.8.3 28839 1eqcA 394 44.50 c.1.8.3 28811 2ctc 307 45.49 2p5tB 253 46.25 1kthA 58 47.36 g.8.1.1 68863 1z5rA 306 47.58 c.56.5.1 124488 1wviA 257 47.97 c.108.1.14 114915 1g6xA 58 48.34 g.8.1.1 60320 1fc4A 401 48.98 c.67.1.4 59760 1ekzA 76 49.16 d.50.1.1 38783 1aalA 58 49.57 g.8.1.1 44472 1qnrA 344 49.71 c.1.8.3 28834 2cmuA 342 50.40 1lehA 364 50.99 c.2.1.7,c.58.1.1 30268,33916 2dpmA 284 52.04 c.66.1.28 34246 1owqA 361 53.01 c.1.8.5,d.26.3.1 104041,104042 1ne7A 289 53.16 c.124.1.1 91833 1m7gA 211 53.49 c.37.1.4 78724 1hzdA 272 54.87 c.14.1.3 65969 1to6A 371 55.64 c.141.1.1 107170 1b3bA 415 57.30 c.2.1.7,c.58.1.1 30244,33892 1h0hA 977 57.93 b.52.2.2,c.81.1.1 76435,76436 2csuA 457 58.88 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2ivfA 976 60.80 1jakA 512 61.33 c.1.8.6,d.92.2.1 66472,66473 1nqkA 381 63.89 c.1.16.4 92050 1x9iA 302 64.21 c.80.1.1 114997 1z0nA 96 65.97 2zf5O 497 66.66 2q62A 247 66.98 1o08A 221 67.72 c.108.1.6 86525 3c8nA 356 67.75 1qw9A 502 68.32 b.71.1.2,c.1.8.3 96466,96467 1f5sA 211 68.69 c.108.1.4 59656 1vk2A 204 69.73 c.18.1.2 100845 2bkxA 242 71.33 2am1A 454 71.73 2qt1A 207 71.74 2fi3I 58 72.11 1ceo 343 72.42 2vhhA 405 72.86 1kbjA 412 73.45 c.1.4.1 72280 1aapA 58 74.43 g.8.1.1 44543 1v4vA 376 75.44 c.87.1.3 100313 2ax4A 198 76.04 1fs5A 266 77.10 c.124.1.1 65044 1xx0A 127 77.43 b.55.1.1 122412 1vjrA 271 77.45 c.108.1.14 100832 2i7cA 283 77.48 1gx1A 160 77.87 d.79.5.1 70675 2c31A 568 78.70 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1dptA 117 79.11 d.80.1.3 39862 1bu6O 501 81.85 c.55.1.4,c.55.1.4 33499,33500 1sq5A 308 82.59 c.37.1.6 105882 1c7sA 858 83.29 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2hdoA 209 84.28 c.108.1.6 136345 2hszA 243 86.71 c.108.1.6 136726 2nxoA 291 86.92 2gpjA 252 88.55 2fcrA 173 88.81 c.23.5.1 31151 1uirA 314 89.33 c.66.1.17 99429