# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jjfA 268 8.75e-12 c.69.1.2 66765 1fj2A 232 1.25e-11 c.69.1.14 34720 1ufoA 238 1.26e-11 c.69.1.27 99344 2i3dA 249 2.29e-11 2d5lA 706 2.44e-11 2o2gA 223 3.74e-11 2z3zA 706 7.59e-11 1l7aA 318 8.71e-11 c.69.1.25 77772 1auoA 218 9.68e-11 c.69.1.14 34716 3bdiA 207 1.44e-10 2jbwA 386 1.54e-10 1mtzA 293 1.74e-10 c.69.1.7 79467 1jfrA 262 1.80e-10 c.69.1.16 34724 2hu5A 582 2.14e-10 b.69.7.2,c.69.1.33 136763,136764 1imjA 210 2.34e-10 c.69.1.23 71246 1orvA 728 3.17e-10 b.70.3.1,c.69.1.24 87354,87355 1u4nA 310 3.33e-10 c.69.1.2 113021 2r8bA 251 5.05e-10 2h7cA 542 5.66e-10 c.69.1.1 136207 2hm7A 310 6.76e-10 1f0nA 285 6.93e-10 c.69.1.3 34636 1lzlA 323 8.03e-10 c.69.1.2 78306 1cr6B 554 1.09e-09 c.69.1.11,c.108.1.2 34688,43338 1pv1A 299 1.28e-09 c.69.1.34 111639 2fukA 220 1.41e-09 1p0iA 529 1.46e-09 c.69.1.1 93867 2hdwA 367 1.52e-09 1ea5A 537 1.52e-09 c.69.1.1 34592 1r88A 280 1.59e-09 c.69.1.3 97219 1c4xA 285 1.60e-09 c.69.1.10 34684 1thgA 544 1.62e-09 c.69.1.17 34763 1c7iA 489 1.76e-09 c.69.1.1 34632 1womA 271 1.80e-09 1qe3A 489 1.84e-09 c.69.1.1 34630 1c7jA 489 1.93e-09 c.69.1.1 34631 1zi8A 236 2.07e-09 1u2eA 289 2.15e-09 1qtrA 317 2.56e-09 c.69.1.7 34660 2ogtA 498 2.88e-09 1gkkA 297 2.93e-09 c.69.1.2 65248 2ocgA 254 3.50e-09 1tqhA 247 3.67e-09 c.69.1.29 107225 2qmqA 286 3.81e-09 1b6g 310 3.95e-09 1xfdA 723 3.97e-09 b.70.3.1,c.69.1.24 115251,115252 3bixA 574 5.79e-09 1dqzA 280 6.58e-09 c.69.1.3 34638 2pblA 262 6.94e-09 2b20A 403 7.01e-09 b.1.18.20,c.69.1.2 127685,127686 1aqlA 532 7.08e-09 c.69.1.1 34627 1wb4A 297 9.43e-09 c.69.1.2 120827 1jjiA 311 9.78e-09 c.69.1.2 66766 1yasA 257 1.03e-08 c.69.1.20 34801 1azwA 313 1.06e-08 c.69.1.7 34658 1b6gA 310 1.06e-08 c.69.1.8 34661 1zd3A 555 1.11e-08 c.108.1.2,c.69.1.11 124930,124931 1ede 310 1.16e-08 1zoiA 276 1.18e-08 2uz0A 263 1.20e-08 1xklA 273 1.20e-08 c.69.1.20 115410 1broA 277 1.38e-08 c.69.1.12 34700 1dqyA 283 1.42e-08 c.69.1.3 34640 3bxpA 277 1.49e-08 2qm0A 275 1.52e-08 1thg 544 1.61e-08 1h2xA 710 1.70e-08 b.69.7.1,c.69.1.4 76598,76599 2bceA 585 1.75e-08 c.69.1.1 34625 1j1iA 296 1.90e-08 c.69.1.10 83977 1ggvA 232 1.90e-08 c.69.1.9 34683 1r1dA 247 1.94e-08 c.69.1.29 96813 1a88A 275 1.95e-08 c.69.1.12 34707 3c5vA 316 2.07e-08 1xqwA 293 2.15e-08 1q0rA 298 2.16e-08 c.69.1.28 95508 1din 236 2.19e-08 1va4A 279 2.48e-08 c.69.1.12 108458 1vlqA 337 2.61e-08 c.69.1.25 108848 2o7rA 338 2.85e-08 1uk8A 282 3.21e-08 c.69.1.10 107907 1cqwA 295 3.22e-08 c.69.1.8 34679 1ehyA 294 3.26e-08 c.69.1.11 34693 1bn7A 294 3.29e-08 c.69.1.8 34677 2rauA 354 3.36e-08 2og1A 286 3.64e-08 1brt 277 3.85e-08 3b5eA 223 4.18e-08 1o6gA 710 4.20e-08 b.69.7.1,c.69.1.4 81087,81088 2puhA 286 4.43e-08 2e3jA 356 4.55e-08 2pujA 286 4.71e-08 1llfA 534 4.73e-08 c.69.1.17 78094 1hkhA 279 5.17e-08 c.69.1.12 90628 1qj4A 257 5.75e-08 c.69.1.20 34796 2bklA 695 6.49e-08 1a8sA 273 6.67e-08 c.69.1.12 34710 1bn6A 294 7.69e-08 c.69.1.8 34678 1m33A 258 7.90e-08 c.69.1.26 78514 1jkmA 358 8.18e-08 c.69.1.2 34633 2rhwA 283 8.77e-08 1y37A 304 9.52e-08 3bwxA 285 1.01e-07 3bf7A 255 1.04e-07 1a8uA 277 1.06e-07 c.69.1.12 34703 1cv2A 296 1.20e-07 c.69.1.8 34680 1brtA 277 1.41e-07 c.69.1.12 34699 2cjpA 328 1.49e-07 1ukcA 522 1.56e-07 c.69.1.17 107911 1wm1A 317 1.67e-07 c.69.1.7 109405 1e8nA 710 1.72e-07 b.69.7.1,c.69.1.4 27675,34643 1dx4A 586 1.75e-07 c.69.1.1 34622 1yr2A 741 1.96e-07 1cleA 534 2.12e-07 c.69.1.17 34771 2yysA 286 2.34e-07 3c8dA 403 2.35e-07 1a8qA 274 2.73e-07 c.69.1.12 34702 2d80A 318 2.75e-07 1r3dA 264 2.87e-07 c.69.1.35 111680 2psdA 318 3.00e-07 1h2wA 710 3.12e-07 b.69.7.1,c.69.1.4 76596,76597 1cvlA 319 3.50e-07 c.69.1.18 34786 1iz7A 295 3.63e-07 c.69.1.8 76982 2bce 581 3.82e-07 2qjwA 176 4.54e-07 1ys1X 320 5.24e-07 2o2iA 300 6.02e-07 1ju3A 583 6.12e-07 b.18.1.13,c.69.1.21 67300,67301 1tahA 318 6.15e-07 c.69.1.18 34775 2fx5A 258 7.02e-07 1mj5A 302 7.39e-07 c.69.1.8 91285 2d81A 318 9.47e-07 2qvbA 297 1.26e-06 2pl5A 366 1.79e-06 1cvl 319 3.18e-06 2qruA 274 3.38e-06 1qo7A 394 3.72e-06 c.69.1.11 34697 1vkhA 273 5.68e-06 c.69.1.32 108662 3bdvA 191 6.02e-06 1i6wA 181 7.22e-06 c.69.1.18 61859 1mpxA 615 1.10e-05 b.18.1.13,c.69.1.21 85041,85042 2gzsA 278 1.17e-05 1qfmA 710 1.18e-05 b.69.7.1,c.69.1.4 27673,34641 1ispA 181 1.54e-05 c.69.1.18 76778 1k8qA 377 2.65e-05 c.69.1.6 72177 2b61A 377 3.32e-05 1qlwA 328 3.53e-05 c.69.1.15 34722 1hlgA 371 5.74e-05 c.69.1.6 34656 2qs9A 194 7.00e-05 1bu8A 452 8.47e-05 b.12.1.2,c.69.1.19 23647,34795 1mnaA 298 8.63e-05 c.69.1.22 79322 1tcaA 317 8.80e-05 c.69.1.17 34726 1gpl 432 0.000136 1thtA 305 0.000143 c.69.1.13 34711 1ycdA 243 0.000165 2veoA 441 0.000194 1tca 317 0.000474 1lnsA 763 0.000522 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1mo2A 294 0.000640 c.69.1.22 79331 1hplA 449 0.000649 b.12.1.2,c.69.1.19 23639,34787 1kezA 300 0.000705 c.69.1.22 68546 2q0xA 335 0.005541 1pjaA 302 0.007849 c.69.1.13 94758 1uxoA 192 0.01715 c.69.1.31 108121 1tib 269 0.05566 1ivyA 452 0.06481 c.69.1.5 34654 1gt6A 269 0.06672 c.69.1.17 76342 1ei9A 279 0.1450 c.69.1.13 34713 1uswA 260 0.2003 c.69.1.17 99895 1tibA 269 0.2304 c.69.1.17 34738 1ku0A 388 0.5239 c.69.1.18 72994 3tglA 269 0.5719 c.69.1.17 34733 2oryA 346 0.6293 1uwcA 261 0.6357 c.69.1.17 100101 2bjhA 260 0.6506 1eiwA 111 0.8281 c.23.3.1 31130 2dsnA 387 1.057 1ac5 483 1.061 1whtA 256 1.115 c.69.1.5 34646 1bcsA 263 1.166 c.69.1.5 34647 2hfkA 319 1.282 2qvpA 275 1.565 2cb9A 244 1.915 1whsA 255 1.951 c.69.1.5 34649 2px6A 316 2.510 1ic6A 279 3.517 c.41.1.1 62257 1jmkC 230 4.431 c.69.1.22 71747 2b81A 323 4.484 1lgyA 269 5.224 c.69.1.17 34758 2z5gA 387 5.770 2i7cA 283 7.248 1ac5A 483 8.809 c.69.1.5 34653 1j8mF 297 11.97 a.24.13.1,c.37.1.10 62742,62743 2hx1A 284 12.81 1drwA 273 13.59 c.2.1.3,d.81.1.3 30057,39972 1e8cA 498 14.21 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1i52A 236 15.35 c.68.1.13 61767 1wviA 257 16.57 c.108.1.14 114915 1m41A 380 16.75 c.1.16.4 78595 2yvuA 186 16.90 3c6kA 381 17.96 1v2dA 381 21.34 c.67.1.1 108281 1gs5A 258 21.62 c.73.1.2 70395 2qcuA 501 26.19 2oycA 306 27.13 1z5rA 306 27.34 c.56.5.1 124488 1p9lA 245 28.69 c.2.1.3,d.81.1.3 94393,94394 1eceA 358 32.01 c.1.8.3 28813 1j3gA 187 33.08 d.118.1.1 77075 3c8uA 208 33.48 2csuA 457 34.56 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1fc4A 401 34.82 c.67.1.4 59760 1cz1A 394 34.90 c.1.8.3 28839 1ceoA 343 35.92 c.1.8.3 28808 2p8eA 307 36.69 2ctc 307 36.85 1eg5A 384 36.90 c.67.1.3 34429 1owqA 361 37.29 c.1.8.5,d.26.3.1 104041,104042 2fywA 267 37.75 c.135.1.1 134408 2dokA 186 38.88 1eqcA 394 41.37 c.1.8.3 28811 1v5tA 90 41.47 d.15.1.1 108385 1kbjA 412 42.67 c.1.4.1 72280 1x9iA 302 42.94 c.80.1.1 114997 1f5sA 211 43.01 c.108.1.4 59656 1e20A 209 43.25 c.34.1.1 31759 2gpjA 252 43.65 1r59O 505 43.82 c.55.1.4,c.55.1.4 111697,111698 2d73A 738 45.48 2jejA 358 46.04 d.240.1.1,e.8.1.7 138284,138285 1edg 380 46.71 2cftA 298 47.82 1pydA 556 47.84 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1nqkA 381 49.30 c.1.16.4 92050 1bu6O 501 51.03 c.55.1.4,c.55.1.4 33499,33500 1g66A 207 51.46 c.69.1.30 31329 1gci 269 51.97 1qnrA 344 53.32 c.1.8.3 28834 3c3pA 210 54.02 2cm1A 260 54.14 3b2yA 275 54.46 1ecxA 384 55.34 c.67.1.3 34431 1yb0A 159 56.41 d.118.1.1 122865 1qpbA 563 58.54 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2z20A 432 59.88 1v7pC 200 60.10 c.62.1.1 108408 1vjrA 271 60.12 c.108.1.14 100832 1b9zA 516 60.63 b.3.1.1,c.1.8.1 22528,28798 3c8nA 356 60.71 1to6A 371 62.11 c.141.1.1 107170 2am1A 454 63.09 2o07A 304 63.46 c.66.1.17 138862 2uzhA 165 64.03 2fdrA 229 64.24 c.108.1.6 133319 1ekzA 76 64.41 d.50.1.1 38783 2bwnA 401 65.88 c.67.1.4 129368 1jakA 512 66.69 c.1.8.6,d.92.2.1 66472,66473 2ag6A 314 66.84 1ozhA 566 67.20 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1d3gA 367 70.35 c.1.4.1 28600 1xp3A 307 71.47 c.1.15.1 122210 2ay1A 394 72.03 c.67.1.1 34357 1ohvA 472 73.19 c.67.1.4 93031 1vm6A 228 74.05 d.81.1.3,c.2.1.3 108877,118631 2hszA 243 75.71 c.108.1.6 136726 1vjzA 341 76.05 c.1.8.3 100838 1whtB 153 76.88 2ivfA 976 78.59 2pezA 179 78.63 1m6iA 493 79.02 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1mjfA 281 79.65 c.66.1.17 79198 2jgdA 933 79.83 2cmgA 262 81.95 2o6lA 170 83.34 2cduA 452 83.69 2eo5A 419 84.25 2cjgA 449 85.14 2bz1A 196 88.25 c.144.1.1 129532 2qj8A 332 88.34 1o08A 221 89.13 c.108.1.6 86525 2c4nA 250 89.16 c.108.1.14 129837 1glaG 501 89.30 c.55.1.4,c.55.1.4 33507,33508 2qfmA 364 89.31 1dptA 117 89.60 d.80.1.3 39862