# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 1.25e-11 c.69.1.27 99344 1fj2A 232 1.47e-11 c.69.1.14 34720 1jjfA 268 1.72e-11 c.69.1.2 66765 2o2gA 223 3.26e-11 2i3dA 249 3.70e-11 2d5lA 706 4.80e-11 1auoA 218 1.07e-10 c.69.1.14 34716 1l7aA 318 1.24e-10 c.69.1.25 77772 3bdiA 207 1.33e-10 2jbwA 386 1.58e-10 1mtzA 293 1.93e-10 c.69.1.7 79467 1jfrA 262 1.96e-10 c.69.1.16 34724 1imjA 210 2.03e-10 c.69.1.23 71246 2z3zA 706 3.51e-10 2hu5A 582 3.90e-10 b.69.7.2,c.69.1.33 136763,136764 1u4nA 310 4.03e-10 c.69.1.2 113021 1lzlA 323 4.51e-10 c.69.1.2 78306 1orvA 728 4.66e-10 b.70.3.1,c.69.1.24 87354,87355 2h7cA 542 4.84e-10 c.69.1.1 136207 2hm7A 310 7.39e-10 2fukA 220 8.38e-10 1p0iA 529 8.71e-10 c.69.1.1 93867 1qe3A 489 8.74e-10 c.69.1.1 34630 1thgA 544 8.97e-10 c.69.1.17 34763 2r8bA 251 9.66e-10 1r88A 280 1.01e-09 c.69.1.3 97219 1f0nA 285 1.08e-09 c.69.1.3 34636 1c7iA 489 1.19e-09 c.69.1.1 34632 1pv1A 299 1.37e-09 c.69.1.34 111639 1zi8A 236 1.39e-09 1c4xA 285 1.48e-09 c.69.1.10 34684 2hdwA 367 1.56e-09 3bixA 574 1.60e-09 1u2eA 289 1.73e-09 1ea5A 537 1.99e-09 c.69.1.1 34592 1c7jA 489 2.00e-09 c.69.1.1 34631 1j1iA 296 2.43e-09 c.69.1.10 83977 2ogtA 498 2.44e-09 1gkkA 297 3.18e-09 c.69.1.2 65248 1womA 271 3.18e-09 1aqlA 532 3.37e-09 c.69.1.1 34627 1cr6B 554 3.39e-09 c.69.1.11,c.108.1.2 34688,43338 1wb4A 297 3.94e-09 c.69.1.2 120827 2pblA 262 4.81e-09 1jjiA 311 5.16e-09 c.69.1.2 66766 1b6g 310 5.35e-09 2qm0A 275 6.51e-09 1tqhA 247 7.23e-09 c.69.1.29 107225 1h2xA 710 8.27e-09 b.69.7.1,c.69.1.4 76598,76599 1thg 544 8.47e-09 2uz0A 263 8.55e-09 3bxpA 277 9.01e-09 1dqyA 283 9.31e-09 c.69.1.3 34640 2ocgA 254 9.34e-09 1a88A 275 9.92e-09 c.69.1.12 34707 1zoiA 276 1.14e-08 2bceA 585 1.17e-08 c.69.1.1 34625 1xqwA 293 1.19e-08 1qtrA 317 1.19e-08 c.69.1.7 34660 1dqzA 280 1.22e-08 c.69.1.3 34638 1broA 277 1.30e-08 c.69.1.12 34700 1ede 310 1.49e-08 1b6gA 310 1.56e-08 c.69.1.8 34661 1uk8A 282 1.57e-08 c.69.1.10 107907 1vlqA 337 1.70e-08 c.69.1.25 108848 1o6gA 710 1.80e-08 b.69.7.1,c.69.1.4 81087,81088 3c5vA 316 1.81e-08 2rauA 354 1.86e-08 1brt 277 2.21e-08 1xfdA 723 2.27e-08 b.70.3.1,c.69.1.24 115251,115252 1llfA 534 2.29e-08 c.69.1.17 78094 1din 236 2.33e-08 2b20A 403 2.48e-08 b.1.18.20,c.69.1.2 127685,127686 1zd3A 555 2.51e-08 c.108.1.2,c.69.1.11 124930,124931 2qmqA 286 2.54e-08 1hkhA 279 2.73e-08 c.69.1.12 90628 1xklA 273 3.09e-08 c.69.1.20 115410 1azwA 313 3.37e-08 c.69.1.7 34658 1ggvA 232 3.44e-08 c.69.1.9 34683 1cqwA 295 3.48e-08 c.69.1.8 34679 2og1A 286 3.67e-08 1va4A 279 3.79e-08 c.69.1.12 108458 1r1dA 247 3.81e-08 c.69.1.29 96813 2bklA 695 3.93e-08 2o7rA 338 4.12e-08 1q0rA 298 4.34e-08 c.69.1.28 95508 3b5eA 223 4.36e-08 1bn7A 294 4.44e-08 c.69.1.8 34677 1yasA 257 4.82e-08 c.69.1.20 34801 2pujA 286 5.16e-08 1cv2A 296 5.65e-08 c.69.1.8 34680 1m33A 258 5.89e-08 c.69.1.26 78514 1a8uA 277 7.78e-08 c.69.1.12 34703 1yr2A 741 8.28e-08 1bn6A 294 9.41e-08 c.69.1.8 34678 1ukcA 522 9.69e-08 c.69.1.17 107911 1a8sA 273 1.00e-07 c.69.1.12 34710 2cjpA 328 1.02e-07 1ehyA 294 1.06e-07 c.69.1.11 34693 2puhA 286 1.07e-07 1brtA 277 1.14e-07 c.69.1.12 34699 1iz7A 295 1.16e-07 c.69.1.8 76982 1qj4A 257 1.27e-07 c.69.1.20 34796 1e8nA 710 1.31e-07 b.69.7.1,c.69.1.4 27675,34643 2rhwA 283 1.34e-07 2psdA 318 1.51e-07 2e3jA 356 1.56e-07 1mj5A 302 1.78e-07 c.69.1.8 91285 1dx4A 586 1.84e-07 c.69.1.1 34622 1jkmA 358 1.85e-07 c.69.1.2 34633 1h2wA 710 1.92e-07 b.69.7.1,c.69.1.4 76596,76597 3bwxA 285 2.08e-07 1cleA 534 2.17e-07 c.69.1.17 34771 1y37A 304 2.35e-07 2qjwA 176 2.39e-07 3c8dA 403 2.49e-07 1wm1A 317 2.78e-07 c.69.1.7 109405 2bce 581 3.06e-07 2o2iA 300 3.21e-07 2yysA 286 3.82e-07 3bf7A 255 3.83e-07 2fx5A 258 4.04e-07 1r3dA 264 4.10e-07 c.69.1.35 111680 1a8qA 274 4.44e-07 c.69.1.12 34702 2qvbA 297 5.95e-07 1cvlA 319 8.84e-07 c.69.1.18 34786 1ys1X 320 1.17e-06 2d80A 318 1.45e-06 1ju3A 583 2.33e-06 b.18.1.13,c.69.1.21 67300,67301 2pl5A 366 2.48e-06 1qo7A 394 3.34e-06 c.69.1.11 34697 2d81A 318 4.10e-06 1tahA 318 4.75e-06 c.69.1.18 34775 3bdvA 191 6.34e-06 2gzsA 278 6.72e-06 1i6wA 181 6.96e-06 c.69.1.18 61859 1qfmA 710 8.97e-06 b.69.7.1,c.69.1.4 27673,34641 2qruA 274 1.48e-05 1cvl 319 1.58e-05 1mpxA 615 1.68e-05 b.18.1.13,c.69.1.21 85041,85042 1ispA 181 1.76e-05 c.69.1.18 76778 1lnsA 763 3.03e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2b61A 377 4.87e-05 1k8qA 377 5.12e-05 c.69.1.6 72177 1vkhA 273 6.63e-05 c.69.1.32 108662 2qs9A 194 7.99e-05 1qlwA 328 8.04e-05 c.69.1.15 34722 1hlgA 371 0.000105 c.69.1.6 34656 1thtA 305 0.000126 c.69.1.13 34711 1mnaA 298 0.000170 c.69.1.22 79322 1ycdA 243 0.000186 2veoA 441 0.000235 1tcaA 317 0.000238 c.69.1.17 34726 1bu8A 452 0.000281 b.12.1.2,c.69.1.19 23647,34795 1mo2A 294 0.000304 c.69.1.22 79331 1gpl 432 0.000392 1tca 317 0.001182 1kezA 300 0.001822 c.69.1.22 68546 1uxoA 192 0.004248 c.69.1.31 108121 1hplA 449 0.004588 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 0.008353 1pjaA 302 0.01401 c.69.1.13 94758 1tib 269 0.1710 1ivyA 452 0.1787 c.69.1.5 34654 1whtA 256 0.3321 c.69.1.5 34646 1whsA 255 0.3527 c.69.1.5 34649 1gt6A 269 0.3975 c.69.1.17 76342 1eiwA 111 0.4324 c.23.3.1 31130 1bcsA 263 0.4563 c.69.1.5 34647 1uswA 260 0.5703 c.69.1.17 99895 2hfkA 319 0.5953 3tglA 269 0.9406 c.69.1.17 34733 1tibA 269 0.9773 c.69.1.17 34738 1uwcA 261 1.199 c.69.1.17 100101 1ac5A 483 1.989 c.69.1.5 34653 2oryA 346 2.158 1ei9A 279 2.293 c.69.1.13 34713 1ku0A 388 2.299 c.69.1.18 72994 1j8mF 297 2.367 a.24.13.1,c.37.1.10 62742,62743 1ic6A 279 2.385 c.41.1.1 62257 1ac5 483 2.474 1i52A 236 2.514 c.68.1.13 61767 2bjhA 260 2.839 2dsnA 387 3.535 2qvpA 275 3.671 2cb9A 244 5.617 1lgyA 269 6.254 c.69.1.17 34758 1j3gA 187 10.87 d.118.1.1 77075 3ckkA 235 11.17 1jmkC 230 11.79 c.69.1.22 71747 2z5gA 387 14.76 1ceoA 343 16.16 c.1.8.3 28808 2g1pA 278 17.61 1bunB 61 20.30 g.8.1.1 44552 2b81A 323 22.86 1o2dA 371 25.58 e.22.1.2 86591 1ekzA 76 28.35 d.50.1.1 38783 2i7cA 283 28.41 2d73A 738 28.57 1drwA 273 28.96 c.2.1.3,d.81.1.3 30057,39972 1bu6O 501 29.23 c.55.1.4,c.55.1.4 33499,33500 2jejA 358 30.78 d.240.1.1,e.8.1.7 138284,138285 2q7xA 326 32.58 1zr0B 63 32.76 2yvuA 186 34.98 1z0nA 96 35.09 1v2dA 381 35.59 c.67.1.1 108281 1ag9A 175 36.63 c.23.5.1 31178 1dptA 117 37.56 d.80.1.3 39862 1x05A 129 38.06 b.55.1.1 121543 1e8cA 498 38.34 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1gs5A 258 38.45 c.73.1.2 70395 1rz3A 201 38.74 c.37.1.6 98132 1ne7A 289 39.57 c.124.1.1 91833 2px6A 316 42.24 2pgnA 589 42.64 3c8uA 208 43.56 2dpmA 284 44.78 c.66.1.28 34246 3cdxA 354 47.20 3c6kA 381 47.90 1d3gA 367 49.07 c.1.4.1 28600 1kthA 58 49.52 g.8.1.1 68863 1uirA 314 50.78 c.66.1.17 99429 1aalA 58 52.27 g.8.1.1 44472 2fcrA 173 53.00 c.23.5.1 31151 1g6xA 58 54.46 g.8.1.1 60320 1eceA 358 55.11 c.1.8.3 28813 2ivfA 976 55.72 1lehA 364 56.31 c.2.1.7,c.58.1.1 30268,33916 1qnrA 344 56.78 c.1.8.3 28834 1f5sA 211 57.16 c.108.1.4 59656 1fs5A 266 58.50 c.124.1.1 65044 1to6A 371 60.49 c.141.1.1 107170 1p9lA 245 60.93 c.2.1.3,d.81.1.3 94393,94394 1jakA 512 60.97 c.1.8.6,d.92.2.1 66472,66473 1dg9A 157 61.27 c.44.1.1 32637 1wviA 257 61.93 c.108.1.14 114915 1db3A 372 62.89 c.2.1.2 29813 1h0hA 977 64.07 b.52.2.2,c.81.1.1 76435,76436 1eg5A 384 64.27 c.67.1.3 34429 1gci 269 66.08 2vhhA 405 67.03 1eudA 311 67.49 c.2.1.8,c.23.4.1 30312,31140 1xx0A 127 67.75 b.55.1.1 122412 1e20A 209 68.07 c.34.1.1 31759 2fi3I 58 70.39 1kbjA 412 72.06 c.1.4.1 72280 2p6pA 384 74.43 3c3pA 210 75.26 1jidA 128 76.01 d.201.1.1 66735 2o07A 304 76.26 c.66.1.17 138862 1x9iA 302 76.52 c.80.1.1 114997 2ax4A 198 77.71 1eqcA 394 78.16 c.1.8.3 28811 1ceo 343 79.35 1aapA 58 79.81 g.8.1.1 44543 1t9hA 307 81.17 b.40.4.5,c.37.1.8 112358,112359 1yixA 265 81.33 c.1.9.12 123371 1cz1A 394 81.34 c.1.8.3 28839 2bz1A 196 82.99 c.144.1.1 129532 2qm8A 337 83.10 1e32A 458 83.24 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1vecA 206 84.05 c.37.1.19 100575 1hl9A 449 84.40 b.71.1.3,c.1.8.11 90650,90651 1bqg 451 85.33 2dokA 186 86.09 2z20A 432 86.66 1v5tA 90 87.83 d.15.1.1 108385 2qt1A 207 88.79 2fywA 267 89.30 c.135.1.1 134408