# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jjfA 268 7.85e-11 c.69.1.2 66765 1ufoA 238 1.80e-09 c.69.1.27 99344 1auoA 218 1.81e-09 c.69.1.14 34716 1fj2A 232 2.32e-09 c.69.1.14 34720 2i3dA 249 3.62e-09 2o2gA 223 6.15e-09 1l7aA 318 9.52e-09 c.69.1.25 77772 1orvA 728 1.23e-08 b.70.3.1,c.69.1.24 87354,87355 2h7cA 542 1.28e-08 c.69.1.1 136207 1mtzA 293 1.32e-08 c.69.1.7 79467 1gkkA 297 1.38e-08 c.69.1.2 65248 2hdwA 367 1.66e-08 3bdiA 207 1.79e-08 2jbwA 386 1.92e-08 1womA 271 2.08e-08 1r88A 280 2.64e-08 c.69.1.3 97219 1lzlA 323 2.70e-08 c.69.1.2 78306 1jfrA 262 3.09e-08 c.69.1.16 34724 1imjA 210 3.38e-08 c.69.1.23 71246 1aqlA 532 3.39e-08 c.69.1.1 34627 1a88A 275 3.53e-08 c.69.1.12 34707 1u4nA 310 4.23e-08 c.69.1.2 113021 2hm7A 310 5.88e-08 2qmqA 286 5.89e-08 1u2eA 289 6.09e-08 1pv1A 299 6.55e-08 c.69.1.34 111639 2hu5A 582 7.51e-08 b.69.7.2,c.69.1.33 136763,136764 1xfdA 723 7.56e-08 b.70.3.1,c.69.1.24 115251,115252 1jjiA 311 7.59e-08 c.69.1.2 66766 1p0iA 529 7.60e-08 c.69.1.1 93867 1wb4A 297 7.75e-08 c.69.1.2 120827 2fukA 220 7.77e-08 2r8bA 251 7.87e-08 1c7iA 489 8.14e-08 c.69.1.1 34632 1ea5A 537 8.61e-08 c.69.1.1 34592 1c4xA 285 8.84e-08 c.69.1.10 34684 2bklA 695 9.74e-08 1zi8A 236 1.13e-07 1f0nA 285 1.27e-07 c.69.1.3 34636 1thgA 544 1.34e-07 c.69.1.17 34763 1ggvA 232 1.86e-07 c.69.1.9 34683 1dqyA 283 1.93e-07 c.69.1.3 34640 1xqwA 293 1.96e-07 2bceA 585 1.99e-07 c.69.1.1 34625 2qm0A 275 2.06e-07 1cr6B 554 2.24e-07 c.69.1.11,c.108.1.2 34688,43338 2ogtA 498 2.32e-07 1dqzA 280 2.55e-07 c.69.1.3 34638 1vlqA 337 2.63e-07 c.69.1.25 108848 1b6g 310 2.86e-07 2ocgA 254 3.03e-07 2rauA 354 3.08e-07 2pblA 262 3.92e-07 3bxpA 277 4.93e-07 1qe3A 489 5.42e-07 c.69.1.1 34630 1qtrA 317 6.04e-07 c.69.1.7 34660 1b6gA 310 6.08e-07 c.69.1.8 34661 2d5lA 706 6.30e-07 1j1iA 296 6.75e-07 c.69.1.10 83977 2uz0A 263 6.87e-07 1uk8A 282 7.03e-07 c.69.1.10 107907 3bixA 574 7.49e-07 1zoiA 276 7.58e-07 3c5vA 316 7.78e-07 1brt 277 7.87e-07 1bn6A 294 7.95e-07 c.69.1.8 34678 1c7jA 489 8.14e-07 c.69.1.1 34631 1tqhA 247 8.99e-07 c.69.1.29 107225 1azwA 313 1.03e-06 c.69.1.7 34658 1r1dA 247 1.06e-06 c.69.1.29 96813 2o7rA 338 1.10e-06 1din 236 1.16e-06 1ede 310 1.23e-06 1thg 544 1.49e-06 1e8nA 710 1.57e-06 b.69.7.1,c.69.1.4 27675,34643 2e3jA 356 1.59e-06 1cqwA 295 1.62e-06 c.69.1.8 34679 2pujA 286 1.65e-06 1a8uA 277 1.67e-06 c.69.1.12 34703 3c8dA 403 1.85e-06 1hkhA 279 1.88e-06 c.69.1.12 90628 1yasA 257 1.90e-06 c.69.1.20 34801 1zd3A 555 2.08e-06 c.108.1.2,c.69.1.11 124930,124931 1ukcA 522 2.21e-06 c.69.1.17 107911 1xklA 273 2.22e-06 c.69.1.20 115410 1va4A 279 2.30e-06 c.69.1.12 108458 1broA 277 2.39e-06 c.69.1.12 34700 3b5eA 223 2.59e-06 1yr2A 741 2.66e-06 1r3dA 264 2.84e-06 c.69.1.35 111680 1a8sA 273 3.34e-06 c.69.1.12 34710 1jkmA 358 3.37e-06 c.69.1.2 34633 1m33A 258 3.61e-06 c.69.1.26 78514 2psdA 318 3.67e-06 1dx4A 586 4.06e-06 c.69.1.1 34622 1q0rA 298 4.38e-06 c.69.1.28 95508 1cv2A 296 4.49e-06 c.69.1.8 34680 2bce 581 4.68e-06 2qjwA 176 4.99e-06 2fx5A 258 5.05e-06 1brtA 277 5.11e-06 c.69.1.12 34699 3bwxA 285 5.14e-06 1llfA 534 5.39e-06 c.69.1.17 78094 1bn7A 294 5.57e-06 c.69.1.8 34677 1iz7A 295 5.89e-06 c.69.1.8 76982 2b20A 403 6.01e-06 b.1.18.20,c.69.1.2 127685,127686 2og1A 286 6.67e-06 2cjpA 328 6.81e-06 1vkhA 273 7.07e-06 c.69.1.32 108662 2z3zA 706 9.48e-06 1h2wA 710 9.72e-06 b.69.7.1,c.69.1.4 76596,76597 3bf7A 255 1.01e-05 1ehyA 294 1.04e-05 c.69.1.11 34693 2puhA 286 1.18e-05 1cleA 534 1.27e-05 c.69.1.17 34771 1y37A 304 1.50e-05 1wm1A 317 1.60e-05 c.69.1.7 109405 2rhwA 283 1.62e-05 1a8qA 274 1.71e-05 c.69.1.12 34702 1mpxA 615 2.09e-05 b.18.1.13,c.69.1.21 85041,85042 2yysA 286 2.27e-05 1mj5A 302 2.52e-05 c.69.1.8 91285 1ju3A 583 2.72e-05 b.18.1.13,c.69.1.21 67300,67301 1cvlA 319 4.62e-05 c.69.1.18 34786 2o2iA 300 5.07e-05 1ys1X 320 6.37e-05 2qruA 274 7.47e-05 1qj4A 257 8.06e-05 c.69.1.20 34796 3bdvA 191 8.52e-05 1tahA 318 8.82e-05 c.69.1.18 34775 1k8qA 377 9.96e-05 c.69.1.6 72177 2qvbA 297 0.000107 1i6wA 181 0.000137 c.69.1.18 61859 2d80A 318 0.000144 1o6gA 710 0.000176 b.69.7.1,c.69.1.4 81087,81088 2gzsA 278 0.000199 2pl5A 366 0.000329 1h2xA 710 0.000413 b.69.7.1,c.69.1.4 76598,76599 1qo7A 394 0.000495 c.69.1.11 34697 1cvl 319 0.000524 1mnaA 298 0.000541 c.69.1.22 79322 1ispA 181 0.000630 c.69.1.18 76778 1bu8A 452 0.000707 b.12.1.2,c.69.1.19 23647,34795 2b61A 377 0.000735 1hlgA 371 0.000970 c.69.1.6 34656 2qs9A 194 0.000992 1gpl 432 0.001025 1tcaA 317 0.001125 c.69.1.17 34726 1tca 317 0.001377 2d81A 318 0.001541 2veoA 441 0.001767 1thtA 305 0.001783 c.69.1.13 34711 1qfmA 710 0.002012 b.69.7.1,c.69.1.4 27673,34641 1qlwA 328 0.002181 c.69.1.15 34722 1mo2A 294 0.002204 c.69.1.22 79331 1ivyA 452 0.004983 c.69.1.5 34654 1pjaA 302 0.008419 c.69.1.13 94758 1lnsA 763 0.008504 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ycdA 243 0.01518 1hplA 449 0.02284 b.12.1.2,c.69.1.19 23639,34787 1kezA 300 0.02408 c.69.1.22 68546 1uxoA 192 0.04081 c.69.1.31 108121 1whsA 255 0.06400 c.69.1.5 34649 2q0xA 335 0.09025 1tib 269 0.4842 1ac5A 483 0.7143 c.69.1.5 34653 2oryA 346 0.8177 2hfkA 319 1.442 1b3bA 415 1.490 c.2.1.7,c.58.1.1 30244,33892 1whtA 256 2.185 c.69.1.5 34646 1uswA 260 2.262 c.69.1.17 99895 2e5vA 472 2.338 1eiwA 111 2.551 c.23.3.1 31130 1bcsA 263 2.760 c.69.1.5 34647 1tibA 269 2.946 c.69.1.17 34738 1gt6A 269 3.156 c.69.1.17 76342 1e8cA 498 3.357 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1v04A 355 4.603 b.68.6.2 100240 1ic6A 279 5.072 c.41.1.1 62257 3tglA 269 6.149 c.69.1.17 34733 2bjhA 260 6.302 1lgyA 269 6.395 c.69.1.17 34758 1ac5 483 6.477 1pydA 556 6.905 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1ceoA 343 7.124 c.1.8.3 28808 1ei9A 279 7.390 c.69.1.13 34713 1obrA 326 7.542 c.56.5.2 33828 2cb9A 244 8.888 1p1jA 533 9.217 c.2.1.3,d.81.1.3 87687,87688 1uwcA 261 9.253 c.69.1.17 100101 1qpbA 563 9.782 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2vccA 891 9.784 2qvpA 275 11.28 2ez9A 603 11.79 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1nrwA 288 11.84 c.108.1.10 86128 2dsnA 387 13.00 1qw9A 502 13.92 b.71.1.2,c.1.8.3 96466,96467 1zvkA 358 14.34 1i52A 236 15.53 c.68.1.13 61767 1j8mF 297 16.04 a.24.13.1,c.37.1.10 62742,62743 1lycA 343 16.27 a.93.1.1 74344 2b8nA 429 17.78 c.118.1.1 128093 1jscA 630 18.45 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 2rghA 571 19.34 2c0hA 353 19.75 c.1.8.3 129594 1b26A 416 21.93 c.2.1.7,c.58.1.1 30232,33880 2q62A 247 22.00 2hzbA 333 22.02 c.143.1.1 136911 2djiA 590 22.08 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1hrdA 449 22.26 c.2.1.7,c.58.1.1 30219,33867 1gw9A 388 22.51 c.1.15.3 70658 1vemA 516 23.14 b.3.1.1,c.1.8.1 120021,120022 1j3gA 187 24.86 d.118.1.1 77075 1poxA 585 24.98 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2g1pA 278 25.25 1tf5A 844 26.41 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1c7sA 858 27.48 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1arb 268 27.82 1ku0A 388 29.01 c.69.1.18 72994 1pixA 587 29.50 c.14.1.4,c.14.1.4 118578,118579 2f9iB 285 29.81 2i7cA 283 30.48 1air 353 31.12 2d1gA 498 31.64 1k77A 260 31.74 c.1.15.5 72096 2v9lA 274 31.82 1ceo 343 32.94 1cz1A 394 33.70 c.1.8.3 28839 1l1lA 739 34.44 c.7.1.4 73470 1y7lA 316 35.04 c.79.1.1 122695 1k89 449 36.99 1nhp 447 38.46 3crrA 323 39.24 2i7nA 360 39.29 2bogX 286 42.29 2hf0A 316 43.28 2z5gA 387 44.10 3c61A 314 45.09 2bmaA 470 45.28 1nowA 507 45.54 c.1.8.6,d.92.2.1 85936,85937 2ahdA 165 45.62 d.159.1.7 126752 1yixA 265 46.40 c.1.9.12 123371 1woqA 267 47.57 c.55.1.10,c.55.1.10 109462,109463 3ckkA 235 47.60 1xf1A 926 49.34 2j43A 219 49.80 1c4zA 358 50.57 d.148.1.1 41766 1hkbA 917 50.96 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 1chd 203 52.03 1oxwA 373 52.63 c.19.1.3 87539 2yv5A 302 52.69 1sflA 238 53.12 c.1.10.1 112077 2yw2A 424 54.34 1nhpA 447 54.80 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1f82A 424 55.04 d.92.1.7 40307 1x6vA 630 56.89 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1reoA 486 56.90 c.3.1.2,d.16.1.5 97325,97326 2aumA 317 57.14 c.8.10.1,c.23.16.7 127330,127331 2pgnA 589 57.25 2pnqA 467 57.55 1qmuA 380 57.57 b.3.2.1,c.56.5.1 22534,33827 2pqmA 343 59.14 2bodX 286 59.16 c.6.1.1 128909 1ido 192 59.32 1e20A 209 60.11 c.34.1.1 31759 1qorA 327 60.34 b.35.1.2,c.2.1.1 24766,29782 2e87A 357 60.44 2nxwA 565 61.80 2cftA 298 62.27 2a73B 991 63.24 1db3A 372 63.29 c.2.1.2 29813 2fncA 381 64.67 1brmA 367 65.26 c.2.1.3,d.81.1.1 30030,39945 3b9qA 302 66.25 1f0kA 364 66.29 c.87.1.2 35465 1v2dA 381 66.95 c.67.1.1 108281 1wpgA 994 67.08 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1xpmA 396 67.47 c.95.1.2,c.95.1.2 115759,115760 1qnrA 344 67.68 c.1.8.3 28834 2bh9A 489 68.23 2e3zA 465 68.65 2i6dA 257 68.77 1ldjA 760 69.60 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1jakA 512 71.74 c.1.8.6,d.92.2.1 66472,66473 1n7hA 381 71.76 c.2.1.2 80250 1lk9A 448 72.71 c.67.1.1 78057 1bncA 449 75.95 b.84.2.1,c.30.1.1,d.142.1.2 28236,31643,41488 2cmgA 262 77.71 2yvuA 186 79.07 2qt1A 207 85.19 1uwsA 489 85.82 c.1.8.4 108073 1bgvA 449 86.38 c.2.1.7,c.58.1.1 30217,33865 1rz3A 201 86.49 c.37.1.6 98132 1qba 858 86.71 1vk4A 298 87.40 c.72.1.1 100850 1drwA 273 88.12 c.2.1.3,d.81.1.3 30057,39972 1ohvA 472 88.12 c.67.1.4 93031 1to6A 371 89.40 c.141.1.1 107170