# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 8.85e-12 c.69.1.27 99344 1jjfA 268 9.54e-12 c.69.1.2 66765 1fj2A 232 1.04e-11 c.69.1.14 34720 2d5lA 706 2.69e-11 2i3dA 249 3.01e-11 2o2gA 223 3.33e-11 1l7aA 318 8.15e-11 c.69.1.25 77772 1auoA 218 1.00e-10 c.69.1.14 34716 3bdiA 207 1.26e-10 2z3zA 706 1.42e-10 1imjA 210 1.64e-10 c.69.1.23 71246 2jbwA 386 1.69e-10 1mtzA 293 1.70e-10 c.69.1.7 79467 1jfrA 262 1.87e-10 c.69.1.16 34724 2h7cA 542 2.46e-10 c.69.1.1 136207 2hu5A 582 2.70e-10 b.69.7.2,c.69.1.33 136763,136764 1u4nA 310 3.20e-10 c.69.1.2 113021 1orvA 728 3.25e-10 b.70.3.1,c.69.1.24 87354,87355 1lzlA 323 3.53e-10 c.69.1.2 78306 1thgA 544 5.20e-10 c.69.1.17 34763 2r8bA 251 6.04e-10 2hm7A 310 6.22e-10 2fukA 220 6.97e-10 1p0iA 529 7.14e-10 c.69.1.1 93867 1qe3A 489 7.76e-10 c.69.1.1 34630 1pv1A 299 7.77e-10 c.69.1.34 111639 1c7iA 489 8.03e-10 c.69.1.1 34632 1f0nA 285 8.31e-10 c.69.1.3 34636 1zi8A 236 9.94e-10 1c4xA 285 1.06e-09 c.69.1.10 34684 1ea5A 537 1.09e-09 c.69.1.1 34592 1r88A 280 1.15e-09 c.69.1.3 97219 2hdwA 367 1.15e-09 3bixA 574 1.20e-09 1c7jA 489 1.29e-09 c.69.1.1 34631 1u2eA 289 1.31e-09 2ogtA 498 1.73e-09 1gkkA 297 2.14e-09 c.69.1.2 65248 1j1iA 296 2.17e-09 c.69.1.10 83977 1womA 271 2.57e-09 1wb4A 297 2.59e-09 c.69.1.2 120827 1aqlA 532 2.65e-09 c.69.1.1 34627 1cr6B 554 2.82e-09 c.69.1.11,c.108.1.2 34688,43338 2pblA 262 3.73e-09 1jjiA 311 4.22e-09 c.69.1.2 66766 1b6g 310 4.55e-09 3bxpA 277 4.88e-09 1h2xA 710 4.91e-09 b.69.7.1,c.69.1.4 76598,76599 1tqhA 247 4.99e-09 c.69.1.29 107225 2qm0A 275 5.03e-09 1thg 544 7.06e-09 2uz0A 263 7.44e-09 1qtrA 317 7.61e-09 c.69.1.7 34660 2ocgA 254 8.11e-09 1a88A 275 8.35e-09 c.69.1.12 34707 1dqyA 283 8.38e-09 c.69.1.3 34640 1xqwA 293 9.49e-09 1xfdA 723 1.02e-08 b.70.3.1,c.69.1.24 115251,115252 1dqzA 280 1.02e-08 c.69.1.3 34638 2rauA 354 1.04e-08 2bceA 585 1.10e-08 c.69.1.1 34625 1broA 277 1.13e-08 c.69.1.12 34700 1vlqA 337 1.15e-08 c.69.1.25 108848 1zoiA 276 1.16e-08 1o6gA 710 1.20e-08 b.69.7.1,c.69.1.4 81087,81088 1uk8A 282 1.25e-08 c.69.1.10 107907 1b6gA 310 1.27e-08 c.69.1.8 34661 1ede 310 1.41e-08 1din 236 1.54e-08 1zd3A 555 1.77e-08 c.108.1.2,c.69.1.11 124930,124931 3c5vA 316 1.80e-08 1llfA 534 1.83e-08 c.69.1.17 78094 1brt 277 1.84e-08 1xklA 273 2.11e-08 c.69.1.20 115410 2o7rA 338 2.17e-08 2qmqA 286 2.24e-08 1ggvA 232 2.29e-08 c.69.1.9 34683 2bklA 695 2.35e-08 1hkhA 279 2.43e-08 c.69.1.12 90628 2og1A 286 2.54e-08 1azwA 313 2.59e-08 c.69.1.7 34658 1yasA 257 2.71e-08 c.69.1.20 34801 1va4A 279 3.14e-08 c.69.1.12 108458 1r1dA 247 3.18e-08 c.69.1.29 96813 1q0rA 298 3.22e-08 c.69.1.28 95508 3b5eA 223 3.29e-08 2b20A 403 3.33e-08 b.1.18.20,c.69.1.2 127685,127686 2pujA 286 3.58e-08 1cqwA 295 3.96e-08 c.69.1.8 34679 1bn7A 294 4.63e-08 c.69.1.8 34677 1cv2A 296 6.09e-08 c.69.1.8 34680 1a8uA 277 6.18e-08 c.69.1.12 34703 1m33A 258 6.23e-08 c.69.1.26 78514 1e8nA 710 6.73e-08 b.69.7.1,c.69.1.4 27675,34643 2puhA 286 6.73e-08 1qj4A 257 6.99e-08 c.69.1.20 34796 2cjpA 328 7.59e-08 1yr2A 741 7.63e-08 1ukcA 522 7.95e-08 c.69.1.17 107911 1ehyA 294 7.95e-08 c.69.1.11 34693 2rhwA 283 9.12e-08 1bn6A 294 9.64e-08 c.69.1.8 34678 1a8sA 273 9.68e-08 c.69.1.12 34710 1iz7A 295 1.06e-07 c.69.1.8 76982 2e3jA 356 1.06e-07 1h2wA 710 1.07e-07 b.69.7.1,c.69.1.4 76596,76597 1brtA 277 1.07e-07 c.69.1.12 34699 1jkmA 358 1.17e-07 c.69.1.2 34633 1dx4A 586 1.22e-07 c.69.1.1 34622 2psdA 318 1.52e-07 2qjwA 176 1.56e-07 1cleA 534 1.64e-07 c.69.1.17 34771 1mj5A 302 1.88e-07 c.69.1.8 91285 3bwxA 285 1.89e-07 1y37A 304 1.96e-07 1wm1A 317 2.16e-07 c.69.1.7 109405 2fx5A 258 2.56e-07 2bce 581 2.60e-07 2yysA 286 3.19e-07 2o2iA 300 3.34e-07 3bf7A 255 3.35e-07 3c8dA 403 3.37e-07 1a8qA 274 3.98e-07 c.69.1.12 34702 1r3dA 264 4.31e-07 c.69.1.35 111680 1cvlA 319 5.63e-07 c.69.1.18 34786 2qvbA 297 5.94e-07 1ys1X 320 8.65e-07 2d80A 318 1.16e-06 1ju3A 583 1.46e-06 b.18.1.13,c.69.1.21 67300,67301 2pl5A 366 2.11e-06 1tahA 318 2.51e-06 c.69.1.18 34775 1qo7A 394 3.03e-06 c.69.1.11 34697 2d81A 318 4.14e-06 1i6wA 181 5.10e-06 c.69.1.18 61859 2gzsA 278 6.41e-06 1qfmA 710 6.49e-06 b.69.7.1,c.69.1.4 27673,34641 3bdvA 191 6.99e-06 2qruA 274 7.63e-06 1cvl 319 9.67e-06 1mpxA 615 1.37e-05 b.18.1.13,c.69.1.21 85041,85042 1ispA 181 1.59e-05 c.69.1.18 76778 1lnsA 763 3.38e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1vkhA 273 3.51e-05 c.69.1.32 108662 1k8qA 377 4.12e-05 c.69.1.6 72177 2b61A 377 4.17e-05 1qlwA 328 4.81e-05 c.69.1.15 34722 1hlgA 371 6.37e-05 c.69.1.6 34656 2qs9A 194 6.85e-05 1mnaA 298 9.91e-05 c.69.1.22 79322 1thtA 305 0.000106 c.69.1.13 34711 2veoA 441 0.000118 1ycdA 243 0.000160 1mo2A 294 0.000173 c.69.1.22 79331 1tcaA 317 0.000180 c.69.1.17 34726 1bu8A 452 0.000264 b.12.1.2,c.69.1.19 23647,34795 1gpl 432 0.000406 1tca 317 0.000904 1kezA 300 0.001487 c.69.1.22 68546 1uxoA 192 0.003600 c.69.1.31 108121 1hplA 449 0.003835 b.12.1.2,c.69.1.19 23639,34787 2q0xA 335 0.004841 1pjaA 302 0.008514 c.69.1.13 94758 1ivyA 452 0.1090 c.69.1.5 34654 1tib 269 0.1097 1whtA 256 0.2241 c.69.1.5 34646 1whsA 255 0.2973 c.69.1.5 34649 1bcsA 263 0.3097 c.69.1.5 34647 1gt6A 269 0.3467 c.69.1.17 76342 1eiwA 111 0.3672 c.23.3.1 31130 2hfkA 319 0.4606 1uswA 260 0.4626 c.69.1.17 99895 1tibA 269 0.6739 c.69.1.17 34738 3tglA 269 0.8720 c.69.1.17 34733 1uwcA 261 0.9399 c.69.1.17 100101 1ei9A 279 1.036 c.69.1.13 34713 1ac5A 483 1.062 c.69.1.5 34653 1ku0A 388 1.190 c.69.1.18 72994 2oryA 346 1.636 1ic6A 279 1.650 c.41.1.1 62257 1j8mF 297 1.678 a.24.13.1,c.37.1.10 62742,62743 1ac5 483 1.699 2dsnA 387 2.244 2bjhA 260 2.578 2cb9A 244 2.601 1lgyA 269 2.621 c.69.1.17 34758 2qvpA 275 2.805 1i52A 236 3.548 c.68.1.13 61767 2z5gA 387 9.367 1jmkC 230 10.27 c.69.1.22 71747 3ckkA 235 10.86 1j3gA 187 10.93 d.118.1.1 77075 1o2dA 371 11.06 e.22.1.2 86591 1ceoA 343 13.60 c.1.8.3 28808 2g1pA 278 16.06 2b81A 323 17.52 2pgnA 589 18.64 1rz3A 201 22.51 c.37.1.6 98132 2i7cA 283 22.94 2px6A 316 25.48 2q7xA 326 25.59 2yvuA 186 25.87 3c8uA 208 27.42 2d73A 738 27.43 1x05A 129 28.87 b.55.1.1 121543 2dpmA 284 31.84 c.66.1.28 34246 2jejA 358 34.00 d.240.1.1,e.8.1.7 138284,138285 1dptA 117 34.91 d.80.1.3 39862 1bu6O 501 35.23 c.55.1.4,c.55.1.4 33499,33500 1ekzA 76 35.40 d.50.1.1 38783 1gs5A 258 35.93 c.73.1.2 70395 3cdxA 354 35.99 3c6kA 381 36.51 1e8cA 498 37.78 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1drwA 273 38.60 c.2.1.3,d.81.1.3 30057,39972 1v2dA 381 38.85 c.67.1.1 108281 1bunB 61 38.94 g.8.1.1 44552 1uirA 314 39.07 c.66.1.17 99429 1qpbA 563 39.92 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1d3gA 367 42.34 c.1.4.1 28600 1p9lA 245 44.35 c.2.1.3,d.81.1.3 94393,94394 1cz1A 394 45.23 c.1.8.3 28839 1ne7A 289 47.23 c.124.1.1 91833 1kbjA 412 48.49 c.1.4.1 72280 2fcrA 173 49.03 c.23.5.1 31151 2qm8A 337 49.42 1lehA 364 49.78 c.2.1.7,c.58.1.1 30268,33916 2o07A 304 50.48 c.66.1.17 138862 1pydA 556 53.10 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1ezwA 349 53.40 c.1.16.3 29558 1jakA 512 53.41 c.1.8.6,d.92.2.1 66472,66473 1eqcA 394 53.46 c.1.8.3 28811 1f5sA 211 55.26 c.108.1.4 59656 1e20A 209 55.87 c.34.1.1 31759 1m41A 380 58.02 c.1.16.4 78595 1qnrA 344 58.92 c.1.8.3 28834 2ez9A 603 59.42 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2am1A 454 60.71 1eceA 358 61.06 c.1.8.3 28813 1gci 269 61.42 2p6pA 384 62.07 1wviA 257 62.85 c.108.1.14 114915 1t9bA 677 63.42 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1ag9A 175 63.44 c.23.5.1 31178 1x9iA 302 63.76 c.80.1.1 114997 2vhhA 405 64.72 1xx0A 127 66.60 b.55.1.1 122412 2ax4A 198 67.44 1sq5A 308 67.89 c.37.1.6 105882 1hzdA 272 68.13 c.14.1.3 65969 1fs5A 266 68.60 c.124.1.1 65044 2p5tB 253 68.77 2b8nA 429 69.25 c.118.1.1 128093 2o6lA 170 69.30 1vecA 206 69.92 c.37.1.19 100575 2csuA 457 70.14 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1eg5A 384 71.64 c.67.1.3 34429 1ceo 343 72.03 1to6A 371 72.28 c.141.1.1 107170 1yixA 265 72.70 c.1.9.12 123371 1dg9A 157 73.25 c.44.1.1 32637 1h0hA 977 73.90 b.52.2.2,c.81.1.1 76435,76436 1poxA 585 74.38 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2q62A 247 75.30 2qt1A 207 77.64 1owqA 361 77.78 c.1.8.5,d.26.3.1 104041,104042 1nni1 174 78.30 1zr0B 63 79.13 1bqg 451 79.43 1e32A 458 79.97 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1hl9A 449 81.58 b.71.1.3,c.1.8.11 90650,90651 2ivfA 976 81.97 1ad4A 266 83.52 c.1.21.1 29670 1db3A 372 84.13 c.2.1.2 29813 1vjzA 341 85.03 c.1.8.3 100838 1yt8A 539 85.67 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1sh7A 284 86.39 2pezA 179 86.82 1qw9A 502 87.17 b.71.1.2,c.1.8.3 96466,96467 1l7mA 211 87.20 c.108.1.4 73664 1z0nA 96 87.77