# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 5.89e-12 c.69.1.27 99344 1jjfA 268 1.50e-11 c.69.1.2 66765 1fj2A 232 2.04e-11 c.69.1.14 34720 2i3dA 249 2.35e-11 2o2gA 223 2.39e-11 2d5lA 706 4.77e-11 1imjA 210 5.92e-11 c.69.1.23 71246 1l7aA 318 6.12e-11 c.69.1.25 77772 1auoA 218 7.78e-11 c.69.1.14 34716 1jfrA 262 1.07e-10 c.69.1.16 34724 1mtzA 293 1.38e-10 c.69.1.7 79467 3bdiA 207 1.56e-10 2jbwA 386 1.83e-10 1lzlA 323 2.39e-10 c.69.1.2 78306 2hu5A 582 2.49e-10 b.69.7.2,c.69.1.33 136763,136764 1thgA 544 3.37e-10 c.69.1.17 34763 2z3zA 706 4.26e-10 1u4nA 310 4.80e-10 c.69.1.2 113021 2h7cA 542 4.86e-10 c.69.1.1 136207 2hm7A 310 5.09e-10 2fukA 220 5.64e-10 1pv1A 299 6.06e-10 c.69.1.34 111639 1orvA 728 6.89e-10 b.70.3.1,c.69.1.24 87354,87355 2r8bA 251 7.55e-10 1r88A 280 7.57e-10 c.69.1.3 97219 1f0nA 285 7.75e-10 c.69.1.3 34636 1u2eA 289 8.14e-10 1womA 271 9.75e-10 1wb4A 297 9.83e-10 c.69.1.2 120827 1c4xA 285 9.86e-10 c.69.1.10 34684 1gkkA 297 1.01e-09 c.69.1.2 65248 1zi8A 236 1.34e-09 1p0iA 529 1.34e-09 c.69.1.1 93867 2hdwA 367 1.39e-09 1qe3A 489 1.42e-09 c.69.1.1 34630 1j1iA 296 1.65e-09 c.69.1.10 83977 1c7iA 489 1.74e-09 c.69.1.1 34632 1b6g 310 1.77e-09 1cr6B 554 1.93e-09 c.69.1.11,c.108.1.2 34688,43338 3bxpA 277 2.43e-09 3bixA 574 2.61e-09 1c7jA 489 2.79e-09 c.69.1.1 34631 2pblA 262 2.92e-09 2ogtA 498 2.94e-09 2ocgA 254 3.37e-09 1jjiA 311 4.23e-09 c.69.1.2 66766 1thg 544 4.45e-09 1ede 310 5.21e-09 1ea5A 537 5.23e-09 c.69.1.1 34592 1b6gA 310 5.77e-09 c.69.1.8 34661 1tqhA 247 6.14e-09 c.69.1.29 107225 1qtrA 317 7.14e-09 c.69.1.7 34660 1aqlA 532 7.42e-09 c.69.1.1 34627 2qm0A 275 7.87e-09 1a88A 275 8.33e-09 c.69.1.12 34707 1broA 277 8.62e-09 c.69.1.12 34700 1xfdA 723 9.28e-09 b.70.3.1,c.69.1.24 115251,115252 1dqyA 283 9.60e-09 c.69.1.3 34640 1vlqA 337 9.72e-09 c.69.1.25 108848 1dqzA 280 1.01e-08 c.69.1.3 34638 1h2xA 710 1.01e-08 b.69.7.1,c.69.1.4 76598,76599 1xqwA 293 1.17e-08 1din 236 1.25e-08 1uk8A 282 1.33e-08 c.69.1.10 107907 2uz0A 263 1.38e-08 1azwA 313 1.54e-08 c.69.1.7 34658 1brt 277 1.55e-08 1zd3A 555 1.59e-08 c.108.1.2,c.69.1.11 124930,124931 2rauA 354 1.83e-08 1va4A 279 1.93e-08 c.69.1.12 108458 1zoiA 276 1.94e-08 2qmqA 286 1.95e-08 1llfA 534 2.09e-08 c.69.1.17 78094 1xklA 273 2.11e-08 c.69.1.20 115410 2o7rA 338 2.14e-08 1o6gA 710 2.17e-08 b.69.7.1,c.69.1.4 81087,81088 3c5vA 316 2.24e-08 2bceA 585 2.32e-08 c.69.1.1 34625 1hkhA 279 2.32e-08 c.69.1.12 90628 2b20A 403 2.35e-08 b.1.18.20,c.69.1.2 127685,127686 2og1A 286 2.35e-08 1r1dA 247 3.05e-08 c.69.1.29 96813 1ggvA 232 3.22e-08 c.69.1.9 34683 2pujA 286 3.24e-08 1yasA 257 3.46e-08 c.69.1.20 34801 1q0rA 298 4.24e-08 c.69.1.28 95508 3b5eA 223 4.34e-08 1cqwA 295 4.38e-08 c.69.1.8 34679 1bn7A 294 4.68e-08 c.69.1.8 34677 2puhA 286 5.30e-08 2bklA 695 5.87e-08 1ehyA 294 6.04e-08 c.69.1.11 34693 1a8uA 277 7.14e-08 c.69.1.12 34703 1m33A 258 7.17e-08 c.69.1.26 78514 1cv2A 296 9.03e-08 c.69.1.8 34680 2rhwA 283 1.01e-07 1brtA 277 1.07e-07 c.69.1.12 34699 1bn6A 294 1.08e-07 c.69.1.8 34678 1a8sA 273 1.08e-07 c.69.1.12 34710 1jkmA 358 1.10e-07 c.69.1.2 34633 1ukcA 522 1.20e-07 c.69.1.17 107911 1qj4A 257 1.20e-07 c.69.1.20 34796 1e8nA 710 1.78e-07 b.69.7.1,c.69.1.4 27675,34643 3c8dA 403 1.78e-07 2e3jA 356 1.80e-07 2cjpA 328 1.97e-07 1yr2A 741 2.07e-07 1iz7A 295 2.13e-07 c.69.1.8 76982 2qjwA 176 2.13e-07 1wm1A 317 2.27e-07 c.69.1.7 109405 2psdA 318 2.34e-07 3bwxA 285 2.42e-07 1dx4A 586 2.73e-07 c.69.1.1 34622 1h2wA 710 2.82e-07 b.69.7.1,c.69.1.4 76596,76597 1mj5A 302 3.17e-07 c.69.1.8 91285 1y37A 304 3.32e-07 3bf7A 255 3.54e-07 1a8qA 274 3.77e-07 c.69.1.12 34702 1cleA 534 3.98e-07 c.69.1.17 34771 1r3dA 264 4.34e-07 c.69.1.35 111680 2fx5A 258 4.77e-07 2yysA 286 4.91e-07 2o2iA 300 9.06e-07 2d80A 318 9.08e-07 2bce 581 9.50e-07 1ys1X 320 1.46e-06 1cvlA 319 1.52e-06 c.69.1.18 34786 2qvbA 297 1.66e-06 1ju3A 583 1.72e-06 b.18.1.13,c.69.1.21 67300,67301 2d81A 318 3.56e-06 2qruA 274 3.93e-06 1qo7A 394 4.11e-06 c.69.1.11 34697 1tahA 318 4.24e-06 c.69.1.18 34775 2pl5A 366 4.39e-06 1lnsA 763 9.18e-06 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 3bdvA 191 9.62e-06 1mpxA 615 1.04e-05 b.18.1.13,c.69.1.21 85041,85042 2gzsA 278 1.14e-05 1i6wA 181 1.14e-05 c.69.1.18 61859 1qfmA 710 1.33e-05 b.69.7.1,c.69.1.4 27673,34641 1k8qA 377 1.68e-05 c.69.1.6 72177 1vkhA 273 2.47e-05 c.69.1.32 108662 1cvl 319 2.74e-05 1ispA 181 3.74e-05 c.69.1.18 76778 1qlwA 328 4.72e-05 c.69.1.15 34722 1hlgA 371 4.90e-05 c.69.1.6 34656 2qs9A 194 5.28e-05 1mnaA 298 8.97e-05 c.69.1.22 79322 2b61A 377 9.37e-05 1thtA 305 9.49e-05 c.69.1.13 34711 2veoA 441 0.000125 1mo2A 294 0.000178 c.69.1.22 79331 1ycdA 243 0.000202 1bu8A 452 0.000411 b.12.1.2,c.69.1.19 23647,34795 1tcaA 317 0.000518 c.69.1.17 34726 1gpl 432 0.000542 1kezA 300 0.000728 c.69.1.22 68546 1tca 317 0.002904 1hplA 449 0.004631 b.12.1.2,c.69.1.19 23639,34787 1pjaA 302 0.01373 c.69.1.13 94758 1uxoA 192 0.01374 c.69.1.31 108121 2q0xA 335 0.01576 1tib 269 0.09179 1ivyA 452 0.1238 c.69.1.5 34654 1whtA 256 0.1424 c.69.1.5 34646 1bcsA 263 0.1804 c.69.1.5 34647 1whsA 255 0.2050 c.69.1.5 34649 1gt6A 269 0.3841 c.69.1.17 76342 1uswA 260 0.4717 c.69.1.17 99895 1eiwA 111 0.5325 c.23.3.1 31130 1tibA 269 0.7214 c.69.1.17 34738 3tglA 269 0.7686 c.69.1.17 34733 2bjhA 260 0.7796 1uwcA 261 0.7922 c.69.1.17 100101 1ei9A 279 0.8811 c.69.1.13 34713 2hfkA 319 1.195 2cb9A 244 1.374 1ac5 483 2.226 2oryA 346 2.242 1ku0A 388 2.625 c.69.1.18 72994 1j8mF 297 2.677 a.24.13.1,c.37.1.10 62742,62743 1ic6A 279 2.696 c.41.1.1 62257 1i52A 236 2.814 c.68.1.13 61767 2qvpA 275 3.992 1ac5A 483 5.108 c.69.1.5 34653 1lgyA 269 5.588 c.69.1.17 34758 2dsnA 387 8.855 2q7xA 326 11.03 1o2dA 371 12.95 e.22.1.2 86591 1bunB 61 16.72 g.8.1.1 44552 1drwA 273 20.19 c.2.1.3,d.81.1.3 30057,39972 2pgnA 589 21.97 1ceoA 343 22.13 c.1.8.3 28808 3c6kA 381 23.28 1rz3A 201 23.90 c.37.1.6 98132 2b81A 323 24.19 3ckkA 235 24.69 1zr0B 63 25.53 2z5gA 387 27.04 3c8uA 208 28.31 2fywA 267 31.21 c.135.1.1 134408 2bz1A 196 32.33 c.144.1.1 129532 3cdxA 354 33.08 1jmkC 230 33.18 c.69.1.22 71747 2g1pA 278 34.20 1kthA 58 34.80 g.8.1.1 68863 1owqA 361 34.99 c.1.8.5,d.26.3.1 104041,104042 1g6xA 58 35.20 g.8.1.1 60320 2i7cA 283 38.02 1p9lA 245 38.90 c.2.1.3,d.81.1.3 94393,94394 1aalA 58 39.44 g.8.1.1 44472 1j3gA 187 39.58 d.118.1.1 77075 2ctc 307 41.49 2px6A 316 42.90 1z5rA 306 43.23 c.56.5.1 124488 2yvuA 186 45.75 1uirA 314 49.93 c.66.1.17 99429 1eceA 358 50.61 c.1.8.3 28813 1aapA 58 51.96 g.8.1.1 44543 1x05A 129 51.98 b.55.1.1 121543 1m7gA 211 53.08 c.37.1.4 78724 1e8cA 498 54.88 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1ne7A 289 54.95 c.124.1.1 91833 2fi3I 58 55.72 1m1sA 116 56.44 b.1.11.2 84747 1qnrA 344 56.74 c.1.8.3 28834 1ekzA 76 56.84 d.50.1.1 38783 2jejA 358 57.32 d.240.1.1,e.8.1.7 138284,138285 1d3gA 367 58.58 c.1.4.1 28600 3blcA 330 59.69 1gs5A 258 61.80 c.73.1.2 70395 2ivfA 976 63.25 2bmaA 470 63.32 2d73A 738 63.81 1dptA 117 65.30 d.80.1.3 39862 1ezwA 349 65.96 c.1.16.3 29558 2ax4A 198 67.33 1sh7A 284 67.70 2fcrA 173 69.20 c.23.5.1 31151 2ez9A 603 71.37 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1bqg 451 74.32 1db3A 372 74.80 c.2.1.2 29813 2dokA 186 75.18 1pa1A 310 75.87 c.45.1.2 94404 1lehA 364 76.61 c.2.1.7,c.58.1.1 30268,33916 1y7lA 316 78.37 c.79.1.1 122695 1t9bA 677 80.99 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1xx0A 127 82.63 b.55.1.1 122412 1sglA 209 82.73 d.124.1.1 105536 1h0hA 977 84.07 b.52.2.2,c.81.1.1 76435,76436 1bavA 309 86.76 c.56.5.1 33806 1eqcA 394 89.08 c.1.8.3 28811