# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 3.41e-12 c.69.1.27 99344 1fj2A 232 3.64e-12 c.69.1.14 34720 1jjfA 268 4.50e-12 c.69.1.2 66765 2o2gA 223 5.15e-12 2i3dA 249 5.19e-12 1l7aA 318 1.03e-11 c.69.1.25 77772 2d5lA 706 2.15e-11 3bdiA 207 2.35e-11 2jbwA 386 2.43e-11 1imjA 210 2.51e-11 c.69.1.23 71246 1auoA 218 2.92e-11 c.69.1.14 34716 1jfrA 262 3.28e-11 c.69.1.16 34724 2hu5A 582 5.52e-11 b.69.7.2,c.69.1.33 136763,136764 1mtzA 293 5.70e-11 c.69.1.7 79467 2hm7A 310 7.58e-11 1lzlA 323 7.97e-11 c.69.1.2 78306 1u4nA 310 9.63e-11 c.69.1.2 113021 2h7cA 542 9.81e-11 c.69.1.1 136207 1orvA 728 1.14e-10 b.70.3.1,c.69.1.24 87354,87355 1thgA 544 1.18e-10 c.69.1.17 34763 2z3zA 706 1.28e-10 1f0nA 285 2.15e-10 c.69.1.3 34636 1p0iA 529 2.24e-10 c.69.1.1 93867 2r8bA 251 2.34e-10 1r88A 280 2.55e-10 c.69.1.3 97219 1pv1A 299 2.64e-10 c.69.1.34 111639 2fukA 220 2.66e-10 1u2eA 289 3.26e-10 1qe3A 489 3.73e-10 c.69.1.1 34630 1c4xA 285 3.81e-10 c.69.1.10 34684 1c7iA 489 4.07e-10 c.69.1.1 34632 1womA 271 4.16e-10 2hdwA 367 4.46e-10 1zi8A 236 4.61e-10 3bixA 574 4.85e-10 1j1iA 296 6.35e-10 c.69.1.10 83977 1b6g 310 6.91e-10 1c7jA 489 6.93e-10 c.69.1.1 34631 1ea5A 537 7.69e-10 c.69.1.1 34592 1cr6B 554 7.98e-10 c.69.1.11,c.108.1.2 34688,43338 1jjiA 311 8.31e-10 c.69.1.2 66766 1gkkA 297 8.49e-10 c.69.1.2 65248 1wb4A 297 1.06e-09 c.69.1.2 120827 2ogtA 498 1.14e-09 2qm0A 275 1.53e-09 1thg 544 1.76e-09 1b6gA 310 1.90e-09 c.69.1.8 34661 2ocgA 254 1.92e-09 2pblA 262 1.96e-09 1aqlA 532 1.99e-09 c.69.1.1 34627 1ede 310 2.08e-09 3bxpA 277 2.17e-09 1tqhA 247 2.23e-09 c.69.1.29 107225 1zoiA 276 2.46e-09 1a88A 275 2.65e-09 c.69.1.12 34707 1vlqA 337 2.72e-09 c.69.1.25 108848 1xfdA 723 2.80e-09 b.70.3.1,c.69.1.24 115251,115252 1dqyA 283 2.88e-09 c.69.1.3 34640 1dqzA 280 3.01e-09 c.69.1.3 34638 1din 236 3.13e-09 2uz0A 263 3.42e-09 2bceA 585 4.29e-09 c.69.1.1 34625 1broA 277 4.38e-09 c.69.1.12 34700 2qmqA 286 4.61e-09 1uk8A 282 4.62e-09 c.69.1.10 107907 1brt 277 4.83e-09 1xqwA 293 4.99e-09 1qtrA 317 5.16e-09 c.69.1.7 34660 1xklA 273 6.34e-09 c.69.1.20 115410 1llfA 534 7.03e-09 c.69.1.17 78094 1h2xA 710 7.11e-09 b.69.7.1,c.69.1.4 76598,76599 1ggvA 232 7.45e-09 c.69.1.9 34683 1va4A 279 7.58e-09 c.69.1.12 108458 2b20A 403 8.12e-09 b.1.18.20,c.69.1.2 127685,127686 1zd3A 555 8.16e-09 c.108.1.2,c.69.1.11 124930,124931 1r1dA 247 9.26e-09 c.69.1.29 96813 2og1A 286 9.38e-09 2rauA 354 9.56e-09 1o6gA 710 9.88e-09 b.69.7.1,c.69.1.4 81087,81088 2o7rA 338 1.02e-08 3c5vA 316 1.12e-08 2pujA 286 1.15e-08 1hkhA 279 1.27e-08 c.69.1.12 90628 1yasA 257 1.30e-08 c.69.1.20 34801 3b5eA 223 1.41e-08 1q0rA 298 1.53e-08 c.69.1.28 95508 1cqwA 295 1.69e-08 c.69.1.8 34679 2bklA 695 1.76e-08 1bn7A 294 1.86e-08 c.69.1.8 34677 1azwA 313 1.95e-08 c.69.1.7 34658 2puhA 286 2.13e-08 1a8uA 277 2.82e-08 c.69.1.12 34703 1a8sA 273 3.04e-08 c.69.1.12 34710 2rhwA 283 3.26e-08 1ehyA 294 3.34e-08 c.69.1.11 34693 1brtA 277 3.53e-08 c.69.1.12 34699 1cv2A 296 3.99e-08 c.69.1.8 34680 1jkmA 358 4.03e-08 c.69.1.2 34633 1bn6A 294 4.20e-08 c.69.1.8 34678 1qj4A 257 5.20e-08 c.69.1.20 34796 2cjpA 328 5.20e-08 2e3jA 356 5.55e-08 1m33A 258 5.70e-08 c.69.1.26 78514 1ukcA 522 6.11e-08 c.69.1.17 107911 3bwxA 285 6.72e-08 1dx4A 586 6.97e-08 c.69.1.1 34622 2psdA 318 7.39e-08 2qjwA 176 7.63e-08 1iz7A 295 7.81e-08 c.69.1.8 76982 1yr2A 741 8.04e-08 1cleA 534 9.70e-08 c.69.1.17 34771 1y37A 304 1.03e-07 3c8dA 403 1.07e-07 1a8qA 274 1.25e-07 c.69.1.12 34702 1mj5A 302 1.35e-07 c.69.1.8 91285 1e8nA 710 1.36e-07 b.69.7.1,c.69.1.4 27675,34643 1r3dA 264 1.52e-07 c.69.1.35 111680 3bf7A 255 1.66e-07 2yysA 286 1.79e-07 1h2wA 710 1.92e-07 b.69.7.1,c.69.1.4 76596,76597 2bce 581 1.95e-07 2o2iA 300 2.12e-07 2fx5A 258 2.13e-07 1wm1A 317 2.46e-07 c.69.1.7 109405 1cvlA 319 3.32e-07 c.69.1.18 34786 2qvbA 297 4.10e-07 2d80A 318 4.36e-07 1ys1X 320 6.26e-07 1ju3A 583 1.01e-06 b.18.1.13,c.69.1.21 67300,67301 2d81A 318 1.31e-06 1tahA 318 1.32e-06 c.69.1.18 34775 1qo7A 394 1.40e-06 c.69.1.11 34697 1i6wA 181 2.95e-06 c.69.1.18 61859 3bdvA 191 3.83e-06 2gzsA 278 3.87e-06 1cvl 319 6.45e-06 1mpxA 615 7.61e-06 b.18.1.13,c.69.1.21 85041,85042 2qruA 274 7.91e-06 1lnsA 763 8.12e-06 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1qfmA 710 8.24e-06 b.69.7.1,c.69.1.4 27673,34641 1ispA 181 8.51e-06 c.69.1.18 76778 2pl5A 366 8.98e-06 1vkhA 273 2.61e-05 c.69.1.32 108662 1k8qA 377 3.02e-05 c.69.1.6 72177 1qlwA 328 3.46e-05 c.69.1.15 34722 1thtA 305 4.12e-05 c.69.1.13 34711 2qs9A 194 4.27e-05 1hlgA 371 7.16e-05 c.69.1.6 34656 1mnaA 298 8.99e-05 c.69.1.22 79322 2b61A 377 0.000136 1ycdA 243 0.000180 2veoA 441 0.000207 1bu8A 452 0.000207 b.12.1.2,c.69.1.19 23647,34795 1tcaA 317 0.000221 c.69.1.17 34726 1gpl 432 0.000280 1mo2A 294 0.000415 c.69.1.22 79331 1kezA 300 0.001158 c.69.1.22 68546 1hplA 449 0.001893 b.12.1.2,c.69.1.19 23639,34787 1tca 317 0.001931 1pjaA 302 0.005517 c.69.1.13 94758 1uxoA 192 0.005723 c.69.1.31 108121 2q0xA 335 0.01026 1tib 269 0.1011 1ivyA 452 0.1831 c.69.1.5 34654 1bcsA 263 0.2228 c.69.1.5 34647 1eiwA 111 0.2306 c.23.3.1 31130 1whtA 256 0.2324 c.69.1.5 34646 1whsA 255 0.2500 c.69.1.5 34649 1gt6A 269 0.3010 c.69.1.17 76342 1uswA 260 0.4125 c.69.1.17 99895 2hfkA 319 0.4865 3tglA 269 0.6417 c.69.1.17 34733 1tibA 269 0.6420 c.69.1.17 34738 1uwcA 261 0.6790 c.69.1.17 100101 2oryA 346 0.8386 2bjhA 260 1.106 1ku0A 388 1.163 c.69.1.18 72994 1i52A 236 1.177 c.68.1.13 61767 1ei9A 279 1.198 c.69.1.13 34713 1lgyA 269 1.385 c.69.1.17 34758 1j8mF 297 1.819 a.24.13.1,c.37.1.10 62742,62743 2cb9A 244 2.835 2dsnA 387 3.340 1ic6A 279 4.493 c.41.1.1 62257 1ac5 483 4.545 2qvpA 275 4.754 1o2dA 371 6.176 e.22.1.2 86591 2b81A 323 6.777 1ac5A 483 8.408 c.69.1.5 34653 1rz3A 201 10.19 c.37.1.6 98132 2z5gA 387 11.59 1jmkC 230 11.62 c.69.1.22 71747 1e8cA 498 11.70 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2g1pA 278 12.96 1ceoA 343 14.10 c.1.8.3 28808 2i7cA 283 14.96 1uirA 314 17.93 c.66.1.17 99429 1bunB 61 18.51 g.8.1.1 44552 1bqg 451 19.10 2o07A 304 19.46 c.66.1.17 138862 1j3gA 187 19.95 d.118.1.1 77075 2fywA 267 23.17 c.135.1.1 134408 1drwA 273 23.98 c.2.1.3,d.81.1.3 30057,39972 1m7gA 211 24.55 c.37.1.4 78724 1qnrA 344 26.53 c.1.8.3 28834 1qpbA 563 27.06 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2csuA 457 28.46 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1dptA 117 29.81 d.80.1.3 39862 1pydA 556 29.98 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 3c8uA 208 30.32 2q7xA 326 31.26 1g6xA 58 32.77 g.8.1.1 60320 1ne7A 289 33.37 c.124.1.1 91833 1aalA 58 34.39 g.8.1.1 44472 1zr0B 63 36.35 2jejA 358 36.84 d.240.1.1,e.8.1.7 138284,138285 1x05A 129 38.02 b.55.1.1 121543 2yvuA 186 38.93 1bu6O 501 39.81 c.55.1.4,c.55.1.4 33499,33500 1wviA 257 40.80 c.108.1.14 114915 2fcrA 173 40.86 c.23.5.1 31151 2dokA 186 41.74 2p5tB 253 42.08 3ckkA 235 42.53 1kthA 58 42.81 g.8.1.1 68863 1aoxA 203 42.85 c.62.1.1 34151 1gs5A 258 45.22 c.73.1.2 70395 1m41A 380 45.51 c.1.16.4 78595 1eg5A 384 45.81 c.67.1.3 34429 2d73A 738 46.23 1z5rA 306 50.65 c.56.5.1 124488 1aapA 58 50.82 g.8.1.1 44543 2fi3I 58 51.93 1eudA 311 52.87 c.2.1.8,c.23.4.1 30312,31140 3c6kA 381 55.52 1fs5A 266 55.93 c.124.1.1 65044 1p9lA 245 56.85 c.2.1.3,d.81.1.3 94393,94394 1vjzA 341 57.63 c.1.8.3 100838 1d6jA 211 58.41 c.37.1.4 31940 1bcsB 160 59.23 1vjrA 271 59.36 c.108.1.14 100832 1ekzA 76 59.97 d.50.1.1 38783 2qt1A 207 60.42 2ivfA 976 60.70 1v2dA 381 62.29 c.67.1.1 108281 2bz1A 196 63.10 c.144.1.1 129532 1whtB 153 63.76 2pgnA 589 64.14 2bkxA 242 65.05 1hl9A 449 65.82 b.71.1.3,c.1.8.11 90650,90651 1owqA 361 66.15 c.1.8.5,d.26.3.1 104041,104042 1gx1A 160 67.06 d.79.5.1 70675 1whsB 153 67.99 1f5sA 211 68.31 c.108.1.4 59656 1ezwA 349 70.07 c.1.16.3 29558 1ag9A 175 70.98 c.23.5.1 31178 1eceA 358 72.16 c.1.8.3 28813 1jidA 128 72.36 d.201.1.1 66735 2ez9A 603 73.60 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2o6lA 170 75.58 2h5eA 529 76.11 1ecxA 384 76.20 c.67.1.3 34431 2f9iB 285 77.43 1v5tA 90 78.10 d.15.1.1 108385 1db3A 372 78.41 c.2.1.2 29813 2ivnA 330 78.45 2c4nA 250 78.86 c.108.1.14 129837 2px6A 316 79.06 2ax4A 198 80.25 2gn0A 342 80.59 1to6A 371 80.91 c.141.1.1 107170 1sq5A 308 82.93 c.37.1.6 105882 1jakA 512 83.37 c.1.8.6,d.92.2.1 66472,66473 2am1A 454 84.54 2q62A 247 84.73 2scuA 288 84.74 c.2.1.8,c.23.4.1 30303,31131 1gci 269 86.18 1ceo 343 87.72 1lehA 364 88.83 c.2.1.7,c.58.1.1 30268,33916