# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ufoA 238 3.00e-12 c.69.1.27 99344 1jjfA 268 6.83e-12 c.69.1.2 66765 1fj2A 232 8.46e-12 c.69.1.14 34720 2o2gA 223 1.08e-11 2i3dA 249 1.22e-11 2d5lA 706 2.12e-11 1auoA 218 3.96e-11 c.69.1.14 34716 1l7aA 318 4.09e-11 c.69.1.25 77772 1imjA 210 4.62e-11 c.69.1.23 71246 3bdiA 207 6.30e-11 1jfrA 262 6.32e-11 c.69.1.16 34724 1mtzA 293 7.06e-11 c.69.1.7 79467 2jbwA 386 7.70e-11 2hu5A 582 9.26e-11 b.69.7.2,c.69.1.33 136763,136764 1lzlA 323 9.58e-11 c.69.1.2 78306 2z3zA 706 1.05e-10 1u4nA 310 1.40e-10 c.69.1.2 113021 2hm7A 310 1.62e-10 1thgA 544 1.73e-10 c.69.1.17 34763 2h7cA 542 1.79e-10 c.69.1.1 136207 1orvA 728 2.43e-10 b.70.3.1,c.69.1.24 87354,87355 2fukA 220 3.32e-10 1p0iA 529 3.97e-10 c.69.1.1 93867 1r88A 280 4.22e-10 c.69.1.3 97219 1c4xA 285 4.40e-10 c.69.1.10 34684 1f0nA 285 4.69e-10 c.69.1.3 34636 1u2eA 289 4.77e-10 1pv1A 299 5.08e-10 c.69.1.34 111639 2r8bA 251 5.49e-10 1c7iA 489 6.39e-10 c.69.1.1 34632 2hdwA 367 6.47e-10 1qe3A 489 6.75e-10 c.69.1.1 34630 1gkkA 297 7.39e-10 c.69.1.2 65248 1j1iA 296 7.88e-10 c.69.1.10 83977 1womA 271 8.07e-10 3bixA 574 9.56e-10 1cr6B 554 9.92e-10 c.69.1.11,c.108.1.2 34688,43338 1wb4A 297 1.01e-09 c.69.1.2 120827 1zi8A 236 1.01e-09 2ogtA 498 1.02e-09 1c7jA 489 1.17e-09 c.69.1.1 34631 1ea5A 537 1.29e-09 c.69.1.1 34592 3bxpA 277 1.46e-09 1b6g 310 1.64e-09 1h2xA 710 1.92e-09 b.69.7.1,c.69.1.4 76598,76599 1jjiA 311 2.01e-09 c.69.1.2 66766 1aqlA 532 2.61e-09 c.69.1.1 34627 2ocgA 254 2.80e-09 1thg 544 3.06e-09 1tqhA 247 3.25e-09 c.69.1.29 107225 2qm0A 275 3.34e-09 1a88A 275 3.77e-09 c.69.1.12 34707 1broA 277 4.09e-09 c.69.1.12 34700 2pblA 262 4.60e-09 1o6gA 710 4.77e-09 b.69.7.1,c.69.1.4 81087,81088 1qtrA 317 4.78e-09 c.69.1.7 34660 1vlqA 337 5.14e-09 c.69.1.25 108848 2uz0A 263 5.42e-09 1ede 310 5.99e-09 1b6gA 310 6.07e-09 c.69.1.8 34661 1xqwA 293 6.24e-09 2rauA 354 6.47e-09 1brt 277 6.70e-09 1dqyA 283 6.76e-09 c.69.1.3 34640 1dqzA 280 6.81e-09 c.69.1.3 34638 1xfdA 723 7.05e-09 b.70.3.1,c.69.1.24 115251,115252 2bceA 585 7.42e-09 c.69.1.1 34625 3c5vA 316 8.04e-09 1va4A 279 8.59e-09 c.69.1.12 108458 1din 236 8.85e-09 1zd3A 555 9.60e-09 c.108.1.2,c.69.1.11 124930,124931 1azwA 313 9.73e-09 c.69.1.7 34658 1zoiA 276 9.87e-09 1uk8A 282 1.02e-08 c.69.1.10 107907 1yasA 257 1.05e-08 c.69.1.20 34801 2qmqA 286 1.08e-08 1xklA 273 1.12e-08 c.69.1.20 115410 1llfA 534 1.13e-08 c.69.1.17 78094 2o7rA 338 1.26e-08 2b20A 403 1.34e-08 b.1.18.20,c.69.1.2 127685,127686 1ggvA 232 1.59e-08 c.69.1.9 34683 2og1A 286 1.60e-08 1hkhA 279 1.63e-08 c.69.1.12 90628 2bklA 695 1.66e-08 1r1dA 247 1.68e-08 c.69.1.29 96813 3b5eA 223 1.71e-08 2pujA 286 1.78e-08 1cqwA 295 1.84e-08 c.69.1.8 34679 1bn7A 294 1.93e-08 c.69.1.8 34677 1q0rA 298 2.39e-08 c.69.1.28 95508 1m33A 258 2.82e-08 c.69.1.26 78514 1e8nA 710 2.95e-08 b.69.7.1,c.69.1.4 27675,34643 1a8uA 277 3.15e-08 c.69.1.12 34703 2puhA 286 3.40e-08 1jkmA 358 3.89e-08 c.69.1.2 34633 1qj4A 257 4.06e-08 c.69.1.20 34796 1bn6A 294 4.27e-08 c.69.1.8 34678 1ehyA 294 4.97e-08 c.69.1.11 34693 1a8sA 273 4.99e-08 c.69.1.12 34710 1brtA 277 5.09e-08 c.69.1.12 34699 1cv2A 296 5.54e-08 c.69.1.8 34680 2rhwA 283 5.69e-08 1h2wA 710 5.70e-08 b.69.7.1,c.69.1.4 76596,76597 1ukcA 522 7.13e-08 c.69.1.17 107911 2e3jA 356 7.32e-08 1dx4A 586 8.57e-08 c.69.1.1 34622 1yr2A 741 8.64e-08 2qjwA 176 1.08e-07 2cjpA 328 1.10e-07 2psdA 318 1.13e-07 1iz7A 295 1.25e-07 c.69.1.8 76982 3bwxA 285 1.40e-07 1r3dA 264 1.44e-07 c.69.1.35 111680 3c8dA 403 1.56e-07 1cleA 534 1.63e-07 c.69.1.17 34771 1wm1A 317 1.64e-07 c.69.1.7 109405 1a8qA 274 1.72e-07 c.69.1.12 34702 1y37A 304 1.78e-07 3bf7A 255 2.09e-07 1mj5A 302 2.10e-07 c.69.1.8 91285 2bce 581 2.36e-07 2yysA 286 2.90e-07 2fx5A 258 3.57e-07 2o2iA 300 4.18e-07 1cvlA 319 6.23e-07 c.69.1.18 34786 1ys1X 320 7.23e-07 2qvbA 297 8.36e-07 2d80A 318 1.00e-06 1ju3A 583 1.13e-06 b.18.1.13,c.69.1.21 67300,67301 1tahA 318 2.30e-06 c.69.1.18 34775 1qo7A 394 2.37e-06 c.69.1.11 34697 2d81A 318 2.52e-06 3bdvA 191 3.08e-06 1qfmA 710 3.08e-06 b.69.7.1,c.69.1.4 27673,34641 2qruA 274 3.51e-06 2pl5A 366 4.17e-06 1i6wA 181 4.67e-06 c.69.1.18 61859 2gzsA 278 5.00e-06 1lnsA 763 1.01e-05 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1cvl 319 1.24e-05 1mpxA 615 1.31e-05 b.18.1.13,c.69.1.21 85041,85042 1ispA 181 1.63e-05 c.69.1.18 76778 1k8qA 377 2.40e-05 c.69.1.6 72177 1vkhA 273 2.80e-05 c.69.1.32 108662 1hlgA 371 3.83e-05 c.69.1.6 34656 1qlwA 328 4.97e-05 c.69.1.15 34722 1mnaA 298 6.07e-05 c.69.1.22 79322 2qs9A 194 6.21e-05 1thtA 305 7.15e-05 c.69.1.13 34711 2b61A 377 7.54e-05 1ycdA 243 9.10e-05 1mo2A 294 0.000134 c.69.1.22 79331 1bu8A 452 0.000144 b.12.1.2,c.69.1.19 23647,34795 2veoA 441 0.000157 1gpl 432 0.000247 1tcaA 317 0.000343 c.69.1.17 34726 1kezA 300 0.000467 c.69.1.22 68546 1hplA 449 0.001565 b.12.1.2,c.69.1.19 23639,34787 1tca 317 0.002190 1uxoA 192 0.008624 c.69.1.31 108121 2q0xA 335 0.009118 1pjaA 302 0.01318 c.69.1.13 94758 1tib 269 0.06323 1ivyA 452 0.1056 c.69.1.5 34654 1whtA 256 0.1261 c.69.1.5 34646 1bcsA 263 0.1603 c.69.1.5 34647 1whsA 255 0.1877 c.69.1.5 34649 1gt6A 269 0.2567 c.69.1.17 76342 1eiwA 111 0.3395 c.23.3.1 31130 1tibA 269 0.3804 c.69.1.17 34738 1uswA 260 0.4946 c.69.1.17 99895 2hfkA 319 0.6166 3tglA 269 0.6610 c.69.1.17 34733 1uwcA 261 0.6912 c.69.1.17 100101 2bjhA 260 1.055 1ei9A 279 1.111 c.69.1.13 34713 2oryA 346 1.386 1ku0A 388 1.692 c.69.1.18 72994 2cb9A 244 1.856 1j8mF 297 1.897 a.24.13.1,c.37.1.10 62742,62743 1ac5 483 2.106 1lgyA 269 2.711 c.69.1.17 34758 1ac5A 483 4.068 c.69.1.5 34653 2qvpA 275 4.718 1ic6A 279 5.039 c.41.1.1 62257 2dsnA 387 5.542 1o2dA 371 5.639 e.22.1.2 86591 1i52A 236 6.245 c.68.1.13 61767 2q7xA 326 9.065 1rz3A 201 13.64 c.37.1.6 98132 2b81A 323 15.46 2z5gA 387 16.90 1owqA 361 16.99 c.1.8.5,d.26.3.1 104041,104042 1jmkC 230 17.02 c.69.1.22 71747 1ceoA 343 18.20 c.1.8.3 28808 1e8cA 498 19.28 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1m7gA 211 21.01 c.37.1.4 78724 1bunB 61 21.02 g.8.1.1 44552 1drwA 273 21.13 c.2.1.3,d.81.1.3 30057,39972 2yvuA 186 22.60 2fywA 267 22.76 c.135.1.1 134408 2g1pA 278 25.62 2jejA 358 26.95 d.240.1.1,e.8.1.7 138284,138285 3c8uA 208 27.45 2csuA 457 29.48 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2i7cA 283 32.51 3c6kA 381 33.74 1j3gA 187 36.71 d.118.1.1 77075 1zr0B 63 36.94 1qnrA 344 37.17 c.1.8.3 28834 2bz1A 196 37.38 c.144.1.1 129532 2pgnA 589 37.74 1bu6O 501 38.85 c.55.1.4,c.55.1.4 33499,33500 1uirA 314 40.79 c.66.1.17 99429 1d6jA 211 41.43 c.37.1.4 31940 1p9lA 245 41.49 c.2.1.3,d.81.1.3 94393,94394 2px6A 316 42.27 3ckkA 235 43.34 2d73A 738 44.78 2ivfA 976 45.06 1m1sA 116 46.15 b.1.11.2 84747 1kthA 58 46.53 g.8.1.1 68863 1e32A 458 47.59 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1bqg 451 49.24 1ne7A 289 49.98 c.124.1.1 91833 2qt1A 207 50.12 2ax4A 198 52.49 1db3A 372 53.00 c.2.1.2 29813 1z5rA 306 53.25 c.56.5.1 124488 1lehA 364 55.40 c.2.1.7,c.58.1.1 30268,33916 1dptA 117 56.79 d.80.1.3 39862 1aalA 58 56.84 g.8.1.1 44472 1g6xA 58 57.03 g.8.1.1 60320 1gs5A 258 57.56 c.73.1.2 70395 2djiA 590 58.59 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1ezwA 349 60.08 c.1.16.3 29558 2dokA 186 60.31 1to6A 371 60.48 c.141.1.1 107170 1z0nA 96 60.86 2f9iB 285 64.06 1eg5A 384 66.62 c.67.1.3 34429 1fs5A 266 68.60 c.124.1.1 65044 2hx1A 284 69.74 1h0hA 977 70.49 b.52.2.2,c.81.1.1 76435,76436 1hl9A 449 70.59 b.71.1.3,c.1.8.11 90650,90651 1m41A 380 70.80 c.1.16.4 78595 1t9bA 677 71.54 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 2ctc 307 72.65 2o07A 304 72.84 c.66.1.17 138862 2gn0A 342 72.94 1wviA 257 74.31 c.108.1.14 114915 1jakA 512 74.43 c.1.8.6,d.92.2.1 66472,66473 1eceA 358 74.77 c.1.8.3 28813 1x05A 129 76.07 b.55.1.1 121543 1sh7A 284 76.12 2p5tB 253 79.80 1c7sA 858 79.92 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1ag9A 175 81.04 c.23.5.1 31178 1xx0A 127 81.51 b.55.1.1 122412 2fi3I 58 81.83 2ez9A 603 82.35 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1j7xA 302 83.37 c.14.1.2 66425 1d3gA 367 85.47 c.1.4.1 28600 1bcsB 160 86.13 1aapA 58 86.94 g.8.1.1 44543 1x9iA 302 87.85 c.80.1.1 114997 2z20A 432 88.10 1qw9A 502 89.11 b.71.1.2,c.1.8.3 96466,96467 1whtB 153 89.14